Wall clock time and date at job start Tue Mar 31 2020 19:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 N 1.46494 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.34781 * 120.00261 * 275.80746 * 4 3 2 6 6 O 1.21682 * 120.00037 * 185.53001 * 5 4 3 7 7 C 1.46684 * 119.99525 * 5.53493 * 5 4 3 8 8 C 1.35667 * 126.12651 * 179.60571 * 7 5 4 9 9 N 1.30941 * 114.18852 * 179.78190 * 8 7 5 10 10 C 1.29427 * 117.36398 * 0.52180 * 9 8 7 11 11 C 1.50710 * 124.80446 * 179.72970 * 10 9 8 12 12 C 1.53000 * 109.46828 * 89.97198 * 11 10 9 13 13 S 1.70949 * 110.39292 * 359.70511 * 10 9 8 14 14 C 1.46506 * 120.00195 * 95.81572 * 4 3 2 15 15 H 1.08996 * 110.88454 * 190.19281 * 14 4 3 16 16 C 1.55157 * 111.00391 * 66.30973 * 14 4 3 17 17 C 1.54322 * 102.94362 * 277.43249 * 16 14 4 18 18 N 1.47025 * 107.26950 * 337.80492 * 17 16 14 19 19 C 1.36937 * 125.64858 * 178.98261 * 18 17 16 20 20 H 1.07997 * 120.00395 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99866 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99857 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99983 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47070 * 89.99981 * 23 21 19 25 25 H 1.48500 * 109.47143 * 209.99759 * 23 21 19 26 26 H 1.48501 * 109.46923 * 330.00035 * 23 21 19 27 27 C 1.47423 * 108.70646 * 358.94642 * 18 17 16 28 28 H 1.08998 * 109.46663 * 300.00241 * 1 2 3 29 29 H 1.09000 * 109.46977 * 59.99542 * 1 2 3 30 30 H 1.08993 * 109.47177 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46977 * 120.00458 * 2 1 3 32 32 H 1.08997 * 109.46669 * 240.00307 * 2 1 3 33 33 H 1.09003 * 109.47234 * 300.00580 * 3 2 1 34 34 H 1.09000 * 109.46764 * 60.00086 * 3 2 1 35 35 H 1.08002 * 122.90572 * 359.95156 * 8 7 5 36 36 H 1.09002 * 109.46874 * 209.97219 * 11 10 9 37 37 H 1.08994 * 109.47109 * 329.97119 * 11 10 9 38 38 H 1.09003 * 109.46993 * 60.00596 * 12 11 10 39 39 H 1.09008 * 109.46756 * 179.97438 * 12 11 10 40 40 H 1.08996 * 109.47166 * 300.00060 * 12 11 10 41 41 H 1.09001 * 110.72069 * 35.79458 * 16 14 4 42 42 H 1.08995 * 110.71482 * 158.89145 * 16 14 4 43 43 H 1.08996 * 109.88544 * 97.22354 * 17 16 14 44 44 H 1.08996 * 109.88391 * 218.23913 * 17 16 14 45 45 H 0.97006 * 119.99702 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.36228 * 265.28895 * 27 18 17 47 47 H 1.08999 * 110.37191 * 142.96323 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1795 1.3241 1.1603 6 8 5.3920 1.4248 1.1725 7 6 3.4516 1.0738 2.4090 8 6 4.0024 0.9268 3.6401 9 7 3.1321 0.7153 4.5954 10 6 1.8829 0.6620 4.2610 11 6 0.7452 0.4222 5.2200 12 6 0.2426 1.7625 5.7603 13 16 1.7060 0.9030 2.5779 14 6 4.2371 1.5711 -1.2631 15 1 5.2994 1.3751 -1.1180 16 6 4.0109 2.9691 -1.8971 17 6 2.6625 2.8028 -2.6289 18 7 2.4709 1.3651 -2.8696 19 6 1.3847 0.7956 -3.4787 20 1 1.3387 -0.2754 -3.6094 21 6 0.3428 1.5951 -3.9284 22 7 0.3987 2.9004 -3.7688 23 14 -1.1387 0.8184 -4.7600 24 1 -2.1635 0.4876 -3.7375 25 1 -1.7109 1.7725 -5.7437 26 1 -0.7193 -0.4224 -5.4600 27 6 3.6423 0.6381 -2.3473 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 5.0663 0.9822 3.8174 36 1 -0.0662 -0.0876 4.7006 37 1 1.0921 -0.1962 6.0477 38 1 -0.1043 2.3808 4.9324 39 1 -0.5806 1.5890 6.4535 40 1 1.0541 2.2723 6.2795 41 1 3.9389 3.7355 -1.1253 42 1 4.8083 3.2066 -2.6012 43 1 1.8534 3.1856 -2.0069 44 1 2.6867 3.3396 -3.5772 45 1 -0.3296 3.4590 -4.0827 46 1 4.3688 0.4686 -3.1420 47 1 3.3345 -0.3095 -1.9051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493977025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:19 Heat of formation + Delta-G solvation = 31.745012 kcal Electronic energy + Delta-G solvation = -28812.890487 eV Core-core repulsion = 25123.254713 eV Total energy + Delta-G solvation = -3689.635775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61690 -40.66194 -38.99958 -36.64392 -34.98467 -34.62148 -33.29615 -31.30313 -30.62963 -29.27907 -27.40661 -27.01740 -26.00659 -24.16702 -23.25354 -22.56318 -21.92990 -21.04567 -19.78269 -19.53105 -18.84791 -17.82966 -17.56246 -16.68413 -16.53238 -16.24667 -16.07028 -15.65371 -15.57934 -15.23084 -14.94990 -14.77188 -14.41796 -14.21576 -13.93807 -13.74791 -13.59764 -13.24921 -13.12307 -12.87637 -12.85118 -12.70783 -12.61837 -12.55012 -12.45025 -12.15577 -12.05367 -12.01040 -11.87862 -11.84268 -11.57323 -11.51202 -11.05102 -10.63908 -10.43716 -10.29943 -9.82091 -9.61132 -8.80013 -7.75846 -5.09619 -0.77174 0.22129 0.66024 1.38503 1.51299 1.54102 1.60124 1.84791 2.08992 2.55309 3.08384 3.41790 3.45679 3.68108 3.84422 3.88101 3.93729 4.00084 4.14073 4.22681 4.27364 4.30153 4.32665 4.36575 4.55571 4.60934 4.68925 4.70944 4.77356 4.89483 4.94947 5.00098 5.02080 5.03112 5.03518 5.12371 5.19243 5.33745 5.42052 5.47454 5.55302 5.60378 5.67326 5.83103 6.24046 6.28857 6.64252 6.93404 7.17969 7.83181 8.48216 9.34200 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.004384 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.068630 B = 6385.401994 C = 7757.499583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.089 3.911 4 N -0.582 5.582 5 C 0.592 3.408 6 O -0.568 6.568 7 C -0.333 4.333 8 C 0.121 3.879 9 N -0.507 5.507 10 C 0.017 3.983 11 C -0.053 4.053 12 C -0.145 4.145 13 S 0.262 5.738 14 C 0.133 3.867 15 H 0.108 0.892 16 C -0.144 4.144 17 C 0.188 3.812 18 N -0.609 5.609 19 C -0.219 4.219 20 H 0.079 0.921 21 C -0.049 4.049 22 N -0.946 5.946 23 Si 0.958 3.042 24 H -0.282 1.282 25 H -0.304 1.304 26 H -0.277 1.277 27 C 0.125 3.875 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.185 0.815 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.027 0.973 44 H 0.009 0.991 45 H 0.244 0.756 46 H 0.040 0.960 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -4.458 15.874 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C -0.035 4.035 4 N -0.311 5.311 5 C 0.381 3.619 6 O -0.450 6.450 7 C -0.457 4.457 8 C -0.039 4.039 9 N -0.222 5.222 10 C -0.255 4.255 11 C -0.093 4.093 12 C -0.204 4.204 13 S 0.523 5.477 14 C 0.029 3.971 15 H 0.126 0.874 16 C -0.183 4.183 17 C 0.063 3.937 18 N -0.336 5.336 19 C -0.347 4.347 20 H 0.097 0.903 21 C -0.243 4.243 22 N -0.595 5.595 23 Si 0.788 3.212 24 H -0.209 1.209 25 H -0.231 1.231 26 H -0.202 1.202 27 C -0.001 4.001 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.202 0.798 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.027 0.973 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.514 -4.401 15.664 16.341 hybrid contribution 0.373 0.116 -0.799 0.890 sum -1.142 -4.285 14.865 15.512 Atomic orbital electron populations 1.21627 0.93789 1.02575 1.01722 1.22027 0.97721 0.95561 1.01680 1.22334 0.78227 0.99168 1.03754 1.47718 1.07355 1.70407 1.05639 1.17083 0.86224 0.76179 0.82452 1.90754 1.14141 1.53564 1.86565 1.25676 0.98685 1.22167 0.99189 1.22208 1.01399 0.94670 0.85579 1.66365 1.01329 1.18617 1.35856 1.28828 0.96457 0.98453 1.01779 1.20489 0.91932 1.00246 0.96665 1.21780 1.01745 0.95120 1.01743 1.84964 1.00974 1.61498 1.00249 1.22199 0.96327 0.96313 0.82247 0.87418 1.23165 0.99252 0.96266 0.99665 1.20924 0.91929 0.84893 0.95949 1.44648 1.17973 1.02187 1.68764 1.19180 0.94411 0.91709 1.29446 0.90294 1.25298 1.00729 0.95819 1.02425 1.70132 1.32912 1.03508 1.52994 0.85382 0.80614 0.77111 0.78075 1.20865 1.23106 1.20184 1.22030 0.89699 0.94853 0.93482 0.91520 0.93785 0.91079 0.91556 0.91655 0.86660 0.91072 0.79806 0.87266 0.88226 0.92422 0.89044 0.93212 0.91325 0.89652 0.95459 0.97255 0.94602 0.94236 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.72 71.98 0.70 -3.13 16 2 C -0.13 -3.92 5.02 30.60 0.15 -3.76 16 3 C 0.09 2.93 4.11 86.38 0.35 3.29 16 4 N -0.58 -19.77 2.52 -794.79 -2.01 -21.77 16 5 C 0.59 20.36 7.60 86.45 0.66 21.02 16 6 O -0.57 -22.17 16.30 -4.29 -0.07 -22.24 16 7 C -0.33 -9.82 6.07 23.88 0.14 -9.67 16 8 C 0.12 3.39 11.09 84.23 0.93 4.33 16 9 N -0.51 -13.31 10.51 -190.29 -2.00 -15.31 16 10 C 0.02 0.37 6.64 88.47 0.59 0.96 16 11 C -0.05 -0.75 6.51 29.85 0.19 -0.55 16 12 C -0.14 -1.83 9.89 71.98 0.71 -1.12 16 13 S 0.26 6.09 14.20 -56.49 -0.80 5.29 16 14 C 0.13 4.66 3.61 46.38 0.17 4.83 16 15 H 0.11 3.68 7.12 -2.39 -0.02 3.66 16 16 C -0.14 -5.21 6.56 31.78 0.21 -5.01 16 17 C 0.19 8.41 4.30 86.73 0.37 8.78 16 18 N -0.61 -27.31 2.18 -691.99 -1.51 -28.82 16 19 C -0.22 -10.74 10.28 84.03 0.86 -9.87 16 20 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 21 C -0.05 -2.51 5.49 84.86 0.47 -2.05 16 22 N -0.95 -51.67 10.31 21.65 0.22 -51.44 16 23 Si 0.96 42.19 29.55 68.60 2.03 44.22 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.13 4.72 6.08 86.86 0.53 5.25 16 28 H 0.07 1.50 7.11 -2.39 -0.02 1.49 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.79 5.66 -11.62 -0.07 1.72 16 32 H 0.06 2.24 5.69 -2.39 -0.01 2.23 16 33 H 0.12 4.67 3.70 -2.39 -0.01 4.66 16 34 H 0.07 2.15 4.73 -20.03 -0.09 2.06 16 35 H 0.19 4.88 8.06 -2.91 -0.02 4.86 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 41 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.03 1.35 5.82 -2.39 -0.01 1.34 16 44 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 45 H 0.24 13.29 8.31 -92.70 -0.77 12.51 16 46 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.05 1.97 6.04 -2.39 -0.01 1.96 16 Total: -1.00 -61.13 368.86 3.75 -57.38 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.85 Total: 19.41 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 7.04 Total: 13.29 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -5.29 Total: -117.34 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.07 Total: -22.24 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -0.80 Total: 5.29 kcal Total: -61.13 3.75 -57.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493977025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.121 kcal (2) G-P(sol) polarization free energy of solvation -61.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds