Wall clock time and date at job start Tue Mar 31 2020 19:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52993 * 109.47524 * 2 1 4 4 N 1.46501 * 109.47531 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00491 * 82.62462 * 4 3 2 6 6 O 1.21681 * 120.00464 * 182.56667 * 5 4 3 7 7 C 1.46690 * 119.99588 * 2.56418 * 5 4 3 8 8 C 1.35655 * 126.12679 * 172.47152 * 7 5 4 9 9 N 1.30947 * 114.18806 * 179.75098 * 8 7 5 10 10 C 1.29432 * 117.36446 * 0.52092 * 9 8 7 11 11 C 1.50694 * 124.80792 * 179.76970 * 10 9 8 12 12 C 1.53002 * 109.47501 * 89.68845 * 11 10 9 13 13 S 1.70954 * 110.38686 * 359.49616 * 10 9 8 14 14 C 1.46504 * 119.99636 * 262.62845 * 4 3 2 15 15 H 1.08999 * 110.64220 * 359.29537 * 14 4 3 16 16 C 1.55159 * 110.71980 * 122.43761 * 14 4 3 17 17 C 1.55129 * 101.48514 * 153.73117 * 16 14 4 18 18 N 1.47426 * 104.94027 * 323.22546 * 17 16 14 19 19 C 1.36943 * 125.64457 * 203.96551 * 18 17 16 20 20 H 1.07994 * 119.99853 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00112 * 0.04250 * 19 18 17 22 22 N 1.31624 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00305 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47082 * 89.99733 * 23 21 19 25 25 H 1.48495 * 109.47364 * 210.00384 * 23 21 19 26 26 H 1.48504 * 109.46816 * 329.99841 * 23 21 19 27 27 C 1.47020 * 108.70742 * 24.00205 * 18 17 16 28 28 H 1.09003 * 109.47016 * 300.00221 * 1 2 3 29 29 H 1.09005 * 109.47136 * 59.99953 * 1 2 3 30 30 H 1.08997 * 109.47714 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47016 * 239.99779 * 2 1 3 32 32 H 1.09005 * 109.47136 * 120.00047 * 2 1 3 33 33 H 1.09003 * 109.47154 * 59.99864 * 3 2 1 34 34 H 1.09000 * 109.47406 * 300.00125 * 3 2 1 35 35 H 1.07994 * 122.90750 * 0.02562 * 8 7 5 36 36 H 1.09005 * 109.46842 * 329.69280 * 11 10 9 37 37 H 1.08999 * 109.47360 * 209.69115 * 11 10 9 38 38 H 1.09004 * 109.47032 * 59.99915 * 12 11 10 39 39 H 1.08998 * 109.47446 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47035 * 300.00470 * 12 11 10 41 41 H 1.08997 * 111.00376 * 271.93495 * 16 14 4 42 42 H 1.09002 * 111.00233 * 35.79054 * 16 14 4 43 43 H 1.09001 * 110.41788 * 204.29824 * 17 16 14 44 44 H 1.08997 * 110.29957 * 82.09005 * 17 16 14 45 45 H 0.97004 * 120.00194 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.88382 * 239.52597 * 27 18 17 47 47 H 1.09000 * 109.88361 * 118.36060 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1785 1.2927 -1.1584 6 8 5.3944 1.2459 -1.1534 7 6 3.4456 1.1863 -2.4246 8 6 3.9917 1.1771 -3.6664 9 7 3.1182 1.0669 -4.6358 10 6 1.8690 0.9923 -4.3054 11 6 0.7272 0.8673 -5.2808 12 6 0.4486 -0.6122 -5.5531 13 16 1.6983 1.0480 -2.6053 14 6 4.2380 1.6050 1.2574 15 1 3.5471 1.7254 2.0918 16 6 5.1867 0.4014 1.4995 17 6 6.2811 1.0451 2.3908 18 7 6.4451 2.4121 1.8637 19 6 7.5649 3.1893 1.9956 20 1 7.5858 4.1824 1.5719 21 6 8.6731 2.7004 2.6737 22 7 8.6475 1.4901 3.1903 23 14 10.2008 3.7602 2.8531 24 1 10.1028 4.5631 4.0985 25 1 11.4022 2.8899 2.9183 26 1 10.3118 4.6703 1.6849 27 6 5.2071 2.8031 1.1737 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.0550 1.2498 -3.8403 36 1 0.9906 1.3651 -6.2141 37 1 -0.1635 1.3332 -4.8593 38 1 0.1853 -1.1101 -4.6198 39 1 -0.3770 -0.7026 -6.2590 40 1 1.3393 -1.0781 -5.9746 41 1 4.6720 -0.4019 2.0268 42 1 5.6098 0.0425 0.5613 43 1 7.2158 0.4908 2.3053 44 1 5.9528 1.0760 3.4297 45 1 9.4220 1.1483 3.6639 46 1 5.4214 3.0342 0.1303 47 1 4.7671 3.6709 1.6650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493977031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:22 Heat of formation + Delta-G solvation = 23.067099 kcal Electronic energy + Delta-G solvation = -27911.209408 eV Core-core repulsion = 24221.197331 eV Total energy + Delta-G solvation = -3690.012077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64631 -40.62235 -38.46942 -37.35128 -35.00156 -34.59618 -33.36998 -31.43172 -30.64452 -29.00431 -27.39301 -26.94060 -26.18520 -24.15431 -23.31194 -22.61091 -22.03932 -21.38606 -19.77907 -19.23506 -18.83621 -18.10455 -17.25727 -16.87302 -16.46090 -16.34260 -15.97748 -15.68836 -15.53715 -15.30907 -14.97985 -14.84567 -14.54138 -14.29336 -14.07962 -13.77112 -13.48727 -13.26392 -13.21298 -13.00723 -12.85806 -12.74308 -12.67401 -12.54226 -12.51450 -12.28706 -12.06995 -12.04802 -12.02005 -11.86532 -11.82384 -11.45440 -10.83994 -10.74781 -10.48207 -10.31447 -9.91738 -9.58968 -8.87249 -7.77892 -5.21432 -0.78464 0.17480 0.58539 1.40159 1.42344 1.45908 1.54254 1.77445 2.10612 2.48892 3.06479 3.30470 3.41627 3.70877 3.78968 3.82379 3.92045 4.01036 4.06310 4.19794 4.22951 4.29354 4.31321 4.33870 4.50555 4.55192 4.66491 4.69840 4.72915 4.88639 4.94723 4.97113 5.00952 5.02361 5.03884 5.11454 5.20750 5.26514 5.35536 5.41468 5.49420 5.58802 5.68714 5.79023 6.24430 6.30493 6.64294 7.04394 7.10062 7.77471 8.41125 9.23984 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.003099 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.501641 B = 9032.107074 C = 9958.487427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 C 0.089 3.911 4 N -0.594 5.594 5 C 0.581 3.419 6 O -0.552 6.552 7 C -0.330 4.330 8 C 0.110 3.890 9 N -0.511 5.511 10 C 0.014 3.986 11 C -0.052 4.052 12 C -0.145 4.145 13 S 0.291 5.709 14 C 0.155 3.845 15 H 0.131 0.869 16 C -0.140 4.140 17 C 0.162 3.838 18 N -0.618 5.618 19 C -0.237 4.237 20 H 0.073 0.927 21 C -0.069 4.069 22 N -0.949 5.949 23 Si 0.982 3.018 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.275 1.275 27 C 0.129 3.871 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.168 0.832 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.000 1.000 45 H 0.247 0.753 46 H 0.013 0.987 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.987 -4.096 -12.530 30.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.189 4.189 3 C -0.034 4.034 4 N -0.325 5.325 5 C 0.369 3.631 6 O -0.431 6.431 7 C -0.454 4.454 8 C -0.049 4.049 9 N -0.226 5.226 10 C -0.258 4.258 11 C -0.093 4.093 12 C -0.204 4.204 13 S 0.551 5.449 14 C 0.052 3.948 15 H 0.148 0.852 16 C -0.179 4.179 17 C 0.036 3.964 18 N -0.344 5.344 19 C -0.366 4.366 20 H 0.091 0.909 21 C -0.261 4.261 22 N -0.598 5.598 23 Si 0.810 3.190 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.200 1.200 27 C 0.003 3.997 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.185 0.815 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.018 0.982 45 H 0.057 0.943 46 H 0.031 0.969 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -27.949 -4.155 -12.359 30.841 hybrid contribution 2.828 0.591 -0.055 2.890 sum -25.122 -3.564 -12.413 28.247 Atomic orbital electron populations 1.21729 0.91934 1.03336 1.03183 1.22175 0.98800 0.95176 1.02758 1.22391 0.77155 0.99224 1.04615 1.47837 1.07681 1.71409 1.05619 1.17225 0.86345 0.76593 0.82924 1.90934 1.14795 1.50634 1.86747 1.25768 0.99769 1.21644 0.98187 1.22062 1.01038 0.95633 0.86130 1.66341 1.01542 1.18422 1.36251 1.28870 0.96239 0.98208 1.02510 1.20512 0.92160 0.99872 0.96737 1.21783 1.02370 0.93215 1.03025 1.83947 0.98871 1.63363 0.98681 1.22042 0.93120 0.94549 0.85122 0.85179 1.23231 0.97142 0.97319 1.00231 1.21634 0.97127 0.85257 0.92342 1.44568 1.11653 1.14529 1.63653 1.19389 0.91649 0.96691 1.28869 0.90907 1.25643 1.01217 0.98468 1.00748 1.70063 1.29982 1.17397 1.42404 0.85027 0.78578 0.77424 0.77986 1.20623 1.21803 1.20038 1.21622 0.87295 0.95751 0.95058 0.90917 0.91348 0.91203 0.92408 0.90932 0.85814 0.89783 0.81525 0.88830 0.86461 0.91698 0.89031 0.93848 0.89377 0.92672 0.91711 0.98185 0.94323 0.96894 0.95345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.78 71.98 0.70 -0.39 16 2 C -0.15 -2.15 5.18 30.59 0.16 -1.99 16 3 C 0.09 1.56 4.97 86.38 0.43 1.99 16 4 N -0.59 -17.37 2.56 -795.91 -2.04 -19.41 16 5 C 0.58 20.63 6.67 86.45 0.58 21.21 16 6 O -0.55 -25.93 13.24 -4.29 -0.06 -25.99 16 7 C -0.33 -9.37 6.12 23.88 0.15 -9.22 16 8 C 0.11 3.30 11.10 84.23 0.93 4.23 16 9 N -0.51 -13.42 10.51 -190.31 -2.00 -15.42 16 10 C 0.01 0.26 6.64 88.46 0.59 0.85 16 11 C -0.05 -0.55 6.51 29.85 0.19 -0.35 16 12 C -0.15 -1.30 9.90 71.98 0.71 -0.58 16 13 S 0.29 4.79 14.62 -56.49 -0.83 3.97 16 14 C 0.16 5.45 3.43 46.18 0.16 5.61 16 15 H 0.13 3.62 7.77 -2.39 -0.02 3.60 16 16 C -0.14 -5.80 6.43 32.06 0.21 -5.60 16 17 C 0.16 8.59 5.89 86.93 0.51 9.10 16 18 N -0.62 -34.89 3.40 -691.55 -2.35 -37.24 16 19 C -0.24 -14.49 10.27 84.03 0.86 -13.62 16 20 H 0.07 4.34 7.83 -2.91 -0.02 4.31 16 21 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 22 N -0.95 -59.82 10.09 21.65 0.22 -59.61 16 23 Si 0.98 48.74 29.55 68.60 2.03 50.76 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 27 C 0.13 5.93 6.48 86.73 0.56 6.49 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.35 7.17 -2.38 -0.02 0.34 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.98 6.10 -4.74 -0.03 0.95 16 32 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.12 1.57 7.80 -2.39 -0.02 1.55 16 34 H 0.09 1.30 4.42 -21.22 -0.09 1.21 16 35 H 0.17 5.36 8.06 -2.91 -0.02 5.34 16 36 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.09 0.42 8.14 -2.39 -0.02 0.41 16 40 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 3.01 8.14 -2.39 -0.02 3.00 16 42 H 0.05 2.61 5.94 -2.39 -0.01 2.60 16 43 H 0.06 4.00 5.87 -2.39 -0.01 3.98 16 44 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.01 0.66 6.15 -2.39 -0.01 0.65 16 47 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -82.87 375.14 3.06 -79.81 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.87 Total: 9.09 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 7.21 Total: 14.02 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -6.17 Total: -131.67 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.06 Total: -25.99 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.76 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -0.83 Total: 3.97 kcal Total: -82.87 3.06 -79.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493977031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.879 kcal (2) G-P(sol) polarization free energy of solvation -82.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds