Wall clock time and date at job start Tue Mar 31 2020 19:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46987 * 2 1 4 4 N 1.46502 * 109.47240 * 181.15494 * 3 2 1 5 5 C 1.34777 * 119.99759 * 84.64400 * 4 3 2 6 6 O 1.21284 * 119.99679 * 175.13715 * 5 4 3 7 7 C 1.50694 * 120.00124 * 355.13702 * 5 4 3 8 8 C 1.53000 * 109.47215 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47264 * 180.02562 * 8 7 5 10 10 N 1.29030 * 124.91665 * 89.99454 * 9 8 7 11 11 C 1.31777 * 117.12198 * 179.97438 * 10 9 8 12 12 C 1.33635 * 114.50329 * 0.02562 * 11 10 9 13 13 S 1.70978 * 124.91426 * 269.99824 * 9 8 7 14 14 C 1.46495 * 119.99777 * 264.64602 * 4 3 2 15 15 H 1.09003 * 110.88587 * 180.61230 * 14 4 3 16 16 C 1.55161 * 111.00798 * 56.73528 * 14 4 3 17 17 C 1.54321 * 102.94007 * 277.42465 * 16 14 4 18 18 N 1.47021 * 107.27282 * 337.80782 * 17 16 14 19 19 C 1.36935 * 125.65089 * 178.98094 * 18 17 16 20 20 H 1.08002 * 120.00232 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99946 * 359.97136 * 19 18 17 22 22 N 1.31620 * 120.00113 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99997 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46995 * 89.99992 * 23 21 19 25 25 H 1.48504 * 109.46828 * 209.99920 * 23 21 19 26 26 H 1.48498 * 109.46822 * 329.99565 * 23 21 19 27 27 C 1.47531 * 108.71637 * 358.94082 * 18 17 16 28 28 H 1.08999 * 109.47415 * 59.99917 * 1 2 3 29 29 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47443 * 299.99734 * 1 2 3 31 31 H 1.08999 * 109.47056 * 240.00200 * 2 1 3 32 32 H 1.08999 * 109.46909 * 119.99931 * 2 1 3 33 33 H 1.09005 * 109.47010 * 61.15718 * 3 2 1 34 34 H 1.08998 * 109.47264 * 301.16073 * 3 2 1 35 35 H 1.08996 * 109.47308 * 59.99292 * 7 5 4 36 36 H 1.09001 * 109.46925 * 299.99752 * 7 5 4 37 37 H 1.08997 * 109.47219 * 59.99791 * 8 7 5 38 38 H 1.09001 * 109.46736 * 299.99580 * 8 7 5 39 39 H 1.08000 * 122.74585 * 180.02562 * 11 10 9 40 40 H 1.08000 * 126.04203 * 180.02562 * 12 11 10 41 41 H 1.09002 * 110.71717 * 35.78332 * 16 14 4 42 42 H 1.09000 * 110.72313 * 159.06123 * 16 14 4 43 43 H 1.09001 * 109.88276 * 97.22199 * 17 16 14 44 44 H 1.09002 * 109.88507 * 218.38993 * 17 16 14 45 45 H 0.96998 * 119.99800 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.37104 * 265.31214 * 27 18 17 47 47 H 1.08991 * 110.41242 * 142.95615 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5047 1.4426 -0.0278 5 6 4.1563 1.3416 -1.2033 6 8 5.3655 1.4302 -1.2358 7 6 3.3826 1.1184 -2.4770 8 6 4.3537 1.0406 -3.6567 9 6 3.5799 0.8181 -4.9306 10 7 3.1210 1.7554 -5.6893 11 6 2.4645 1.3859 -6.7705 12 6 2.3635 0.0632 -6.9326 13 16 3.1829 -0.7131 -5.5796 14 6 4.2610 1.5526 1.2220 15 1 5.3338 1.5486 1.0287 16 6 3.8699 0.4221 2.2101 17 6 2.5870 0.9692 2.8708 18 7 2.6047 2.4309 2.7143 19 6 1.6320 3.2918 3.1478 20 1 1.7389 4.3540 2.9842 21 6 0.5085 2.7993 3.7974 22 7 0.3779 1.5048 3.9963 23 14 -0.8188 3.9736 4.3881 24 1 -1.8275 4.1610 3.3144 25 1 -1.4778 3.4097 5.5935 26 1 -0.2061 5.2834 4.7259 27 6 3.8443 2.8171 2.0138 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6936 1.9503 0.9002 34 1 1.6597 1.9623 -0.8794 35 1 2.6892 1.9452 -2.6305 36 1 2.8245 0.1849 -2.4042 37 1 5.0468 0.2136 -3.5029 38 1 4.9122 1.9739 -3.7296 39 1 2.0426 2.0939 -7.4684 40 1 1.8678 -0.4409 -7.7490 41 1 3.6627 -0.5041 1.6740 42 1 4.6526 0.2718 2.9536 43 1 1.7091 0.5540 2.3759 44 1 2.5757 0.7098 3.9295 45 1 -0.4074 1.1606 4.4499 46 1 4.6181 3.0868 2.7326 47 1 3.6532 3.6458 1.3321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493977705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:01 Heat of formation + Delta-G solvation = 36.774250 kcal Electronic energy + Delta-G solvation = -28026.626526 eV Core-core repulsion = 24337.208835 eV Total energy + Delta-G solvation = -3689.417690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.18540 -39.72996 -37.66092 -34.94798 -33.98177 -32.84283 -31.72684 -29.94267 -29.24328 -27.61091 -26.30968 -25.53266 -24.36436 -23.38299 -21.30911 -20.56844 -20.08796 -20.03501 -18.48753 -18.23230 -17.01228 -16.99552 -15.90899 -15.68252 -15.44312 -14.75269 -14.71191 -14.38757 -14.16556 -13.88414 -13.71442 -13.44185 -13.32517 -12.77305 -12.58492 -12.35068 -12.11915 -12.00056 -11.88481 -11.73480 -11.47967 -11.27528 -11.24344 -11.04509 -10.97467 -10.88192 -10.55728 -10.28867 -10.16765 -10.07077 -9.91335 -9.83550 -9.68276 -9.63753 -9.38666 -9.07087 -8.68604 -8.18516 -6.84608 -5.77620 -3.11575 0.47106 1.13552 1.52953 2.61059 2.88307 3.33838 3.35999 3.42659 3.43282 3.95904 4.44643 4.63566 4.90076 4.91210 4.99734 5.06141 5.24347 5.30238 5.34079 5.42295 5.45225 5.53407 5.57893 5.69517 5.72450 5.76396 5.87498 5.90871 5.94868 5.99371 6.15746 6.21933 6.29512 6.36350 6.48797 6.53734 6.62098 6.68674 6.73075 6.85000 7.15640 7.52119 7.52999 7.57678 7.78377 7.87156 8.18560 8.47947 9.15823 9.74930 10.40506 11.32813 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016115 B = 0.003021 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.091622 B = 9267.455237 C = 9909.203424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.084 3.916 4 N -0.582 5.582 5 C 0.515 3.485 6 O -0.556 6.556 7 C -0.134 4.134 8 C -0.029 4.029 9 C 0.059 3.941 10 N -0.475 5.475 11 C 0.040 3.960 12 C -0.266 4.266 13 S 0.119 5.881 14 C 0.123 3.877 15 H 0.099 0.901 16 C -0.158 4.158 17 C 0.167 3.833 18 N -0.602 5.602 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.917 5.917 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.124 3.876 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.252 0.748 46 H 0.030 0.970 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 -6.413 -17.698 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.039 4.039 4 N -0.312 5.312 5 C 0.303 3.697 6 O -0.436 6.436 7 C -0.175 4.175 8 C -0.070 4.070 9 C -0.218 4.218 10 N -0.189 5.189 11 C -0.111 4.111 12 C -0.405 4.405 13 S 0.373 5.627 14 C 0.019 3.981 15 H 0.117 0.883 16 C -0.197 4.197 17 C 0.043 3.957 18 N -0.329 5.329 19 C -0.359 4.359 20 H 0.095 0.905 21 C -0.200 4.200 22 N -0.564 5.564 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.003 4.003 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.157 0.843 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.192 0.808 40 H 0.193 0.807 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.921 -6.847 -17.128 18.858 hybrid contribution -1.375 1.135 -0.348 1.817 sum 2.545 -5.712 -17.476 18.561 Atomic orbital electron populations 1.21661 0.95241 1.01198 1.02418 1.22037 0.96428 0.97434 1.01687 1.22261 0.78077 0.97351 1.06199 1.47817 1.07474 1.70471 1.05478 1.20397 0.87847 0.76438 0.85064 1.90652 1.14285 1.51752 1.86886 1.21706 0.99009 1.04883 0.91908 1.20030 0.95700 1.05608 0.85696 1.27206 1.01973 0.91357 1.01308 1.66309 1.12020 1.35671 1.04887 1.21841 0.99470 0.94036 0.95750 1.27084 1.10512 0.97968 1.04965 1.84110 1.49033 1.12434 1.17109 1.22235 0.95879 0.97035 0.82969 0.88305 1.23303 1.00926 0.97509 0.97981 1.21396 0.92497 0.83270 0.98530 1.44622 1.18543 1.02757 1.66949 1.19029 0.96576 0.89115 1.31199 0.90520 1.24750 0.98398 0.96071 1.00771 1.69958 1.29071 1.10404 1.47012 0.86184 0.81914 0.79925 0.78124 1.21592 1.21740 1.20792 1.21932 0.90139 0.94515 0.93716 0.93631 0.93281 0.90930 0.93572 0.90533 0.84256 0.92284 0.88342 0.88620 0.88797 0.87880 0.80787 0.80658 0.91756 0.91523 0.91966 0.94170 0.93750 0.95200 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.14 -2.08 5.30 -26.73 -0.14 -2.22 16 3 C 0.08 1.39 4.16 -4.04 -0.02 1.37 16 4 N -0.58 -9.70 2.53 -163.68 -0.41 -10.12 16 5 C 0.51 8.14 7.63 -10.99 -0.08 8.05 16 6 O -0.56 -10.16 15.37 5.55 0.09 -10.07 16 7 C -0.13 -1.66 4.35 -27.89 -0.12 -1.78 16 8 C -0.03 -0.34 5.09 -27.88 -0.14 -0.48 16 9 C 0.06 0.67 6.64 -13.45 -0.09 0.58 16 10 N -0.47 -5.83 10.54 -11.86 -0.13 -5.95 16 11 C 0.04 0.39 11.35 -19.19 -0.22 0.17 16 12 C -0.27 -2.19 11.37 29.12 0.33 -1.86 16 13 S 0.12 1.08 23.18 -107.50 -2.49 -1.41 16 14 C 0.12 2.20 3.66 -65.78 -0.24 1.96 16 15 H 0.10 1.76 7.02 -51.93 -0.36 1.40 16 16 C -0.16 -2.85 5.99 -24.90 -0.15 -3.00 16 17 C 0.17 3.70 4.16 -3.07 -0.01 3.68 16 18 N -0.60 -14.03 1.91 -169.99 -0.32 -14.36 16 19 C -0.23 -5.97 9.90 -15.06 -0.15 -6.12 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 22 N -0.92 -24.70 10.31 55.49 0.57 -24.13 16 23 Si 0.91 21.05 29.55 -169.99 -5.02 16.03 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.12 2.50 6.54 -2.47 -0.02 2.48 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.05 0.61 6.32 -51.93 -0.33 0.28 16 32 H 0.08 1.28 4.71 -51.93 -0.24 1.03 16 33 H 0.14 2.88 4.32 -51.93 -0.22 2.66 16 34 H 0.06 0.89 6.71 -51.93 -0.35 0.55 16 35 H 0.10 1.22 7.29 -51.93 -0.38 0.84 16 36 H 0.10 1.07 6.35 -51.93 -0.33 0.74 16 37 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 39 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.06 1.09 6.78 -51.93 -0.35 0.73 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.44 4.44 -51.93 -0.23 1.21 16 44 H 0.04 1.02 7.51 -51.93 -0.39 0.63 16 45 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -29.08 375.00 -9.81 -38.88 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.96 Total: 4.62 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.78 Total: 0.85 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.29 Total: -54.56 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.49 Total: -1.41 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.08 -9.81 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493977705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.657 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds