Wall clock time and date at job start Tue Mar 31 2020 19:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46987 * 2 1 4 4 N 1.46502 * 109.47240 * 181.15494 * 3 2 1 5 5 C 1.34777 * 119.99759 * 84.64400 * 4 3 2 6 6 O 1.21284 * 119.99679 * 175.13715 * 5 4 3 7 7 C 1.50694 * 120.00124 * 355.13702 * 5 4 3 8 8 C 1.53000 * 109.47215 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47264 * 180.02562 * 8 7 5 10 10 N 1.29030 * 124.91665 * 89.99454 * 9 8 7 11 11 C 1.31777 * 117.12198 * 179.97438 * 10 9 8 12 12 C 1.33635 * 114.50329 * 0.02562 * 11 10 9 13 13 S 1.70978 * 124.91426 * 269.99824 * 9 8 7 14 14 C 1.46495 * 119.99777 * 264.64602 * 4 3 2 15 15 H 1.09003 * 110.88587 * 180.61230 * 14 4 3 16 16 C 1.55161 * 111.00798 * 56.73528 * 14 4 3 17 17 C 1.54321 * 102.94007 * 277.42465 * 16 14 4 18 18 N 1.47021 * 107.27282 * 337.80782 * 17 16 14 19 19 C 1.36935 * 125.65089 * 178.98094 * 18 17 16 20 20 H 1.08002 * 120.00232 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99946 * 359.97136 * 19 18 17 22 22 N 1.31620 * 120.00113 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99997 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46995 * 89.99992 * 23 21 19 25 25 H 1.48504 * 109.46828 * 209.99920 * 23 21 19 26 26 H 1.48498 * 109.46822 * 329.99565 * 23 21 19 27 27 C 1.47531 * 108.71637 * 358.94082 * 18 17 16 28 28 H 1.08999 * 109.47415 * 59.99917 * 1 2 3 29 29 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47443 * 299.99734 * 1 2 3 31 31 H 1.08999 * 109.47056 * 240.00200 * 2 1 3 32 32 H 1.08999 * 109.46909 * 119.99931 * 2 1 3 33 33 H 1.09005 * 109.47010 * 61.15718 * 3 2 1 34 34 H 1.08998 * 109.47264 * 301.16073 * 3 2 1 35 35 H 1.08996 * 109.47308 * 59.99292 * 7 5 4 36 36 H 1.09001 * 109.46925 * 299.99752 * 7 5 4 37 37 H 1.08997 * 109.47219 * 59.99791 * 8 7 5 38 38 H 1.09001 * 109.46736 * 299.99580 * 8 7 5 39 39 H 1.08000 * 122.74585 * 180.02562 * 11 10 9 40 40 H 1.08000 * 126.04203 * 180.02562 * 12 11 10 41 41 H 1.09002 * 110.71717 * 35.78332 * 16 14 4 42 42 H 1.09000 * 110.72313 * 159.06123 * 16 14 4 43 43 H 1.09001 * 109.88276 * 97.22199 * 17 16 14 44 44 H 1.09002 * 109.88507 * 218.38993 * 17 16 14 45 45 H 0.96998 * 119.99800 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.37104 * 265.31214 * 27 18 17 47 47 H 1.08991 * 110.41242 * 142.95615 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5047 1.4426 -0.0278 5 6 4.1563 1.3416 -1.2033 6 8 5.3655 1.4302 -1.2358 7 6 3.3826 1.1184 -2.4770 8 6 4.3537 1.0406 -3.6567 9 6 3.5799 0.8181 -4.9306 10 7 3.1210 1.7554 -5.6893 11 6 2.4645 1.3859 -6.7705 12 6 2.3635 0.0632 -6.9326 13 16 3.1829 -0.7131 -5.5796 14 6 4.2610 1.5526 1.2220 15 1 5.3338 1.5486 1.0287 16 6 3.8699 0.4221 2.2101 17 6 2.5870 0.9692 2.8708 18 7 2.6047 2.4309 2.7143 19 6 1.6320 3.2918 3.1478 20 1 1.7389 4.3540 2.9842 21 6 0.5085 2.7993 3.7974 22 7 0.3779 1.5048 3.9963 23 14 -0.8188 3.9736 4.3881 24 1 -1.8275 4.1610 3.3144 25 1 -1.4778 3.4097 5.5935 26 1 -0.2061 5.2834 4.7259 27 6 3.8443 2.8171 2.0138 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6936 1.9503 0.9002 34 1 1.6597 1.9623 -0.8794 35 1 2.6892 1.9452 -2.6305 36 1 2.8245 0.1849 -2.4042 37 1 5.0468 0.2136 -3.5029 38 1 4.9122 1.9739 -3.7296 39 1 2.0426 2.0939 -7.4684 40 1 1.8678 -0.4409 -7.7490 41 1 3.6627 -0.5041 1.6740 42 1 4.6526 0.2718 2.9536 43 1 1.7091 0.5540 2.3759 44 1 2.5757 0.7098 3.9295 45 1 -0.4074 1.1606 4.4499 46 1 4.6181 3.0868 2.7326 47 1 3.6532 3.6458 1.3321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493977705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:00 Heat of formation + Delta-G solvation = 21.716230 kcal Electronic energy + Delta-G solvation = -28027.279491 eV Core-core repulsion = 24337.208835 eV Total energy + Delta-G solvation = -3690.070655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47397 -40.56453 -39.15642 -36.40891 -35.06863 -34.34685 -33.27126 -31.21050 -30.56979 -29.14560 -27.31078 -27.00122 -26.02061 -24.30971 -22.56712 -21.97057 -21.81064 -20.81672 -19.81841 -19.07304 -18.86527 -18.23016 -17.20623 -16.69947 -16.63856 -16.32928 -15.89076 -15.62720 -15.54838 -15.18844 -14.91180 -14.68809 -14.37731 -13.95734 -13.90735 -13.74126 -13.54185 -13.50438 -13.19460 -12.87691 -12.82172 -12.76487 -12.55072 -12.42673 -12.38257 -12.21184 -12.03811 -11.95105 -11.83827 -11.74181 -11.47518 -11.33632 -10.74588 -10.62896 -10.58222 -10.34196 -9.80466 -9.61380 -8.73867 -7.78225 -5.12406 -0.24347 0.44250 0.83496 1.49164 1.50655 1.57804 1.62287 1.85147 2.08666 2.52741 3.13938 3.40760 3.58729 3.70958 3.90231 3.95741 4.02217 4.08063 4.09276 4.21672 4.30114 4.37661 4.43071 4.46326 4.57485 4.58306 4.68864 4.71573 4.75455 4.84082 4.90775 4.95814 5.01224 5.03076 5.04439 5.13718 5.25908 5.34968 5.41787 5.46526 5.53681 5.74744 5.76424 5.91242 6.26132 6.55688 6.81504 7.17330 7.18831 7.81741 8.46562 9.30204 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016115 B = 0.003021 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.091622 B = 9267.455237 C = 9909.203424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.090 3.910 4 N -0.585 5.585 5 C 0.515 3.485 6 O -0.580 6.580 7 C -0.123 4.123 8 C -0.022 4.022 9 C 0.034 3.966 10 N -0.504 5.504 11 C 0.018 3.982 12 C -0.252 4.252 13 S 0.148 5.852 14 C 0.134 3.866 15 H 0.106 0.894 16 C -0.143 4.143 17 C 0.179 3.821 18 N -0.613 5.613 19 C -0.239 4.239 20 H 0.074 0.926 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.278 1.278 27 C 0.123 3.877 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.194 0.806 40 H 0.207 0.793 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.000 1.000 45 H 0.246 0.754 46 H 0.033 0.967 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -7.419 -20.105 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C -0.033 4.033 4 N -0.315 5.315 5 C 0.305 3.695 6 O -0.461 6.461 7 C -0.164 4.164 8 C -0.064 4.064 9 C -0.242 4.242 10 N -0.219 5.219 11 C -0.133 4.133 12 C -0.391 4.391 13 S 0.402 5.598 14 C 0.029 3.971 15 H 0.124 0.876 16 C -0.182 4.182 17 C 0.054 3.946 18 N -0.339 5.339 19 C -0.368 4.368 20 H 0.092 0.908 21 C -0.243 4.243 22 N -0.584 5.584 23 Si 0.794 3.206 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.203 1.203 27 C -0.003 4.003 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.210 0.790 40 H 0.224 0.776 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.018 0.982 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.707 -7.842 -19.551 21.389 hybrid contribution -1.286 1.455 0.328 1.970 sum 2.420 -6.386 -19.223 20.400 Atomic orbital electron populations 1.21585 0.95064 1.01895 1.01287 1.21947 0.96452 0.96299 1.02098 1.22094 0.77975 0.98247 1.04945 1.47847 1.07443 1.70773 1.05436 1.20926 0.87691 0.75335 0.85517 1.90643 1.15542 1.52719 1.87218 1.21659 0.98789 1.05760 0.90173 1.19888 0.95524 1.05037 0.85914 1.27041 1.03068 0.92638 1.01501 1.66291 1.12718 1.37008 1.05927 1.22190 1.00044 0.95263 0.95762 1.27507 1.09027 0.97540 1.05029 1.83982 1.48319 1.10609 1.16926 1.22048 0.96289 0.95404 0.83379 0.87614 1.23169 0.99023 0.97954 0.98089 1.21163 0.94292 0.82876 0.96244 1.44741 1.19042 1.03120 1.67046 1.19246 0.97312 0.89463 1.30775 0.90827 1.25367 1.00134 0.97326 1.01437 1.70132 1.29116 1.11545 1.47623 0.85297 0.79696 0.78367 0.77235 1.21234 1.22429 1.20341 1.22012 0.88990 0.95605 0.93718 0.91836 0.91688 0.94864 0.90711 0.92346 0.88194 0.90662 0.88142 0.86759 0.88270 0.89572 0.78954 0.77626 0.90149 0.90370 0.93111 0.98207 0.94469 0.94921 0.94315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.13 -3.71 5.30 30.59 0.16 -3.55 16 3 C 0.09 2.92 4.16 86.38 0.36 3.28 16 4 N -0.59 -18.84 2.53 -790.14 -2.00 -20.84 16 5 C 0.52 15.51 7.63 87.66 0.67 16.18 16 6 O -0.58 -20.49 15.37 -3.04 -0.05 -20.54 16 7 C -0.12 -2.80 4.35 29.85 0.13 -2.67 16 8 C -0.02 -0.49 5.09 29.85 0.15 -0.34 16 9 C 0.03 0.72 6.64 88.52 0.59 1.30 16 10 N -0.50 -11.63 10.54 -191.45 -2.02 -13.65 16 11 C 0.02 0.30 11.35 83.66 0.95 1.25 16 12 C -0.25 -3.33 11.37 66.78 0.76 -2.58 16 13 S 0.15 2.27 23.18 -56.49 -1.31 0.96 16 14 C 0.13 4.69 3.66 46.39 0.17 4.86 16 15 H 0.11 3.64 7.02 -2.39 -0.02 3.62 16 16 C -0.14 -5.09 5.99 31.78 0.19 -4.90 16 17 C 0.18 8.09 4.16 86.73 0.36 8.45 16 18 N -0.61 -29.21 1.91 -691.73 -1.32 -30.53 16 19 C -0.24 -12.62 9.90 84.03 0.83 -11.79 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 21 C -0.05 -2.58 5.49 84.86 0.47 -2.11 16 22 N -0.94 -51.95 10.31 21.65 0.22 -51.73 16 23 Si 0.96 43.99 29.55 68.60 2.03 46.02 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.12 4.98 6.54 86.83 0.57 5.55 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 1.72 6.32 -2.39 -0.02 1.70 16 32 H 0.06 1.90 4.71 -2.39 -0.01 1.89 16 33 H 0.10 4.19 4.32 -2.38 -0.01 4.18 16 34 H 0.08 2.17 6.71 -2.39 -0.02 2.15 16 35 H 0.10 2.30 7.29 -2.39 -0.02 2.28 16 36 H 0.11 2.18 6.35 -2.39 -0.02 2.17 16 37 H 0.10 2.02 8.10 -2.39 -0.02 2.00 16 38 H 0.09 2.15 8.10 -2.39 -0.02 2.13 16 39 H 0.19 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.08 2.61 6.78 -2.39 -0.02 2.59 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.58 16 43 H 0.05 2.42 4.44 -2.39 -0.01 2.41 16 44 H 0.00 -0.02 7.51 -2.39 -0.02 -0.04 16 45 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 46 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -64.13 375.00 3.61 -60.52 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.98 Total: 20.14 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 7.07 Total: 9.65 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -5.11 Total: -116.75 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.96 kcal Total: -64.13 3.61 -60.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493977705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.236 kcal (2) G-P(sol) polarization free energy of solvation -64.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds