Wall clock time and date at job start Tue Mar 31 2020 19:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00337 * 89.99693 * 4 3 2 6 6 O 1.21282 * 120.00258 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99977 * 0.02562 * 5 4 3 8 8 C 1.53001 * 109.46986 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46723 * 180.02562 * 8 7 5 10 10 N 1.29018 * 124.92132 * 89.69523 * 9 8 7 11 11 C 1.31783 * 117.12604 * 179.81385 * 10 9 8 12 12 C 1.33637 * 114.50083 * 0.47033 * 11 10 9 13 13 S 1.70988 * 124.91115 * 269.99709 * 9 8 7 14 14 C 1.46497 * 119.99929 * 269.99768 * 4 3 2 15 15 H 1.09002 * 110.64361 * 359.29773 * 14 4 3 16 16 C 1.55154 * 110.72494 * 122.44261 * 14 4 3 17 17 C 1.55119 * 101.49032 * 153.73360 * 16 14 4 18 18 N 1.47425 * 104.94262 * 323.22283 * 17 16 14 19 19 C 1.36937 * 125.64976 * 204.03738 * 18 17 16 20 20 H 1.07996 * 120.00414 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99686 * 359.95844 * 19 18 17 22 22 N 1.31614 * 120.00296 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99706 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47305 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46891 * 119.99975 * 23 21 19 26 26 H 1.48501 * 109.47546 * 240.00100 * 23 21 19 27 27 C 1.47025 * 108.70178 * 24.00433 * 18 17 16 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 1.08999 * 109.46394 * 300.00002 * 7 5 4 36 36 H 1.08997 * 109.47055 * 59.99479 * 7 5 4 37 37 H 1.09002 * 109.47043 * 299.99300 * 8 7 5 38 38 H 1.08992 * 109.46986 * 60.00032 * 8 7 5 39 39 H 1.08010 * 122.74902 * 180.22937 * 11 10 9 40 40 H 1.07999 * 126.03741 * 179.72428 * 12 11 10 41 41 H 1.08998 * 111.00613 * 271.94357 * 16 14 4 42 42 H 1.09000 * 111.00283 * 35.78810 * 16 14 4 43 43 H 1.08997 * 110.41832 * 204.29390 * 17 16 14 44 44 H 1.09005 * 110.20673 * 82.04529 * 17 16 14 45 45 H 0.97007 * 120.00196 * 179.97438 * 22 21 19 46 46 H 1.09006 * 109.87788 * 239.52246 * 27 18 17 47 47 H 1.09001 * 110.00915 * 118.43148 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.4425 -1.1680 6 8 5.3912 1.4430 -1.1685 7 6 3.4244 1.4433 -2.4729 8 6 4.4182 1.4426 -3.6362 9 6 3.6642 1.4439 -4.9410 10 7 3.2910 2.5025 -5.5772 11 6 2.6416 2.3249 -6.7101 12 6 2.4481 1.0453 -7.0434 13 16 3.1730 0.0427 -5.7888 14 6 4.2380 1.4423 1.2678 15 1 3.5471 1.4547 2.1108 16 6 5.1866 0.2176 1.3535 17 6 6.2810 0.7415 2.3200 18 7 6.4452 2.1648 1.9726 19 6 7.5654 2.9182 2.2019 20 1 7.5868 3.9574 1.9084 21 6 8.6735 2.3464 2.8118 22 7 8.6473 1.0803 3.1702 23 14 10.2019 3.3740 3.1240 24 1 9.9776 4.7571 2.6319 25 1 10.4867 3.4076 4.5810 26 1 11.3564 2.7745 2.4076 27 6 5.2072 2.6411 1.3385 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 2.7974 0.5535 -2.5306 36 1 2.7980 2.3335 -2.5301 37 1 5.0456 2.3321 -3.5786 38 1 5.0441 0.5521 -3.5787 39 1 2.2909 3.1464 -7.3175 40 1 1.9372 0.6888 -7.9255 41 1 4.6720 -0.6467 1.7733 42 1 5.6097 -0.0180 0.3770 43 1 7.2156 0.2027 2.1641 44 1 5.9509 0.6389 3.3537 45 1 9.4218 0.6806 3.5961 46 1 5.4216 3.0043 0.3333 47 1 4.7661 3.4398 1.9349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493977717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:04 Heat of formation + Delta-G solvation = 37.665545 kcal Electronic energy + Delta-G solvation = -27413.912780 eV Core-core repulsion = 23724.533739 eV Total energy + Delta-G solvation = -3689.379041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.24393 -39.75728 -36.88469 -35.92049 -33.98795 -32.96261 -31.73803 -29.97889 -29.01148 -27.47321 -26.51451 -25.62903 -24.37051 -23.27271 -21.88772 -20.76683 -20.07833 -20.04048 -18.51533 -18.14662 -16.93320 -16.76756 -15.96064 -15.70289 -15.51222 -14.86879 -14.72731 -14.49849 -14.24495 -14.12420 -13.75902 -13.59440 -13.22073 -12.86016 -12.79065 -12.53699 -12.31313 -12.19059 -11.96881 -11.76356 -11.56957 -11.48966 -11.44171 -11.26005 -10.90277 -10.83613 -10.75600 -10.67006 -10.39508 -9.98744 -9.86040 -9.72257 -9.66862 -9.45625 -9.22727 -8.98721 -8.52453 -8.25784 -6.66288 -5.51707 -2.91484 0.44109 1.10673 1.50246 2.57878 2.91622 3.16158 3.48586 3.53826 3.56556 3.91011 4.51960 4.61962 4.72308 4.81633 4.84508 4.87377 4.96435 5.00674 5.15528 5.20951 5.27151 5.36790 5.46398 5.50848 5.54155 5.62658 5.65940 5.72584 5.82680 5.85530 5.88575 5.90261 5.97993 5.99145 6.12741 6.35680 6.61979 6.66870 6.71289 6.84820 7.27363 7.50344 7.60224 7.71644 7.77040 7.99336 8.48981 8.53232 9.36025 9.97306 10.62469 11.52498 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.002998 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.760201 B = 9337.577243 C =10901.082046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.108 3.892 4 N -0.606 5.606 5 C 0.508 3.492 6 O -0.505 6.505 7 C -0.132 4.132 8 C -0.032 4.032 9 C 0.062 3.938 10 N -0.475 5.475 11 C 0.040 3.960 12 C -0.267 4.267 13 S 0.119 5.881 14 C 0.135 3.865 15 H 0.086 0.914 16 C -0.153 4.153 17 C 0.158 3.842 18 N -0.595 5.595 19 C -0.211 4.211 20 H 0.076 0.924 21 C -0.015 4.015 22 N -0.924 5.924 23 Si 0.913 3.087 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.132 3.868 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.008 0.992 45 H 0.249 0.751 46 H 0.039 0.961 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.214 -4.166 -16.421 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.015 4.015 4 N -0.339 5.339 5 C 0.294 3.706 6 O -0.379 6.379 7 C -0.174 4.174 8 C -0.073 4.073 9 C -0.216 4.216 10 N -0.189 5.189 11 C -0.111 4.111 12 C -0.406 4.406 13 S 0.372 5.628 14 C 0.032 3.968 15 H 0.104 0.896 16 C -0.193 4.193 17 C 0.033 3.967 18 N -0.321 5.321 19 C -0.339 4.339 20 H 0.093 0.907 21 C -0.209 4.209 22 N -0.574 5.574 23 Si 0.744 3.256 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.005 3.995 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.192 0.808 40 H 0.193 0.807 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.026 0.974 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -19.114 -4.703 -15.949 25.334 hybrid contribution 0.135 1.229 -0.444 1.314 sum -18.979 -3.474 -16.392 25.318 Atomic orbital electron populations 1.21706 0.95308 1.01873 1.01851 1.21993 0.95844 0.97424 1.02998 1.21657 0.80036 0.96730 1.03115 1.47990 1.05940 1.73775 1.06179 1.20336 0.88231 0.77184 0.84829 1.90844 1.13216 1.46930 1.86886 1.21699 0.98975 1.04469 0.92223 1.20053 0.95938 1.06351 0.84991 1.27218 1.01943 0.90703 1.01762 1.66315 1.13295 1.31579 1.07734 1.21849 0.99110 0.96355 0.93796 1.27085 1.11079 0.96655 1.05815 1.84135 1.50067 1.13065 1.15500 1.22191 0.93218 0.98121 0.83238 0.89588 1.23433 0.97949 0.95232 1.02675 1.21867 0.97253 0.85302 0.92274 1.44283 1.10595 1.07800 1.69447 1.19104 0.90120 0.93077 1.31647 0.90659 1.24750 0.98272 0.96439 1.01484 1.69808 1.29342 1.10943 1.47272 0.86008 0.83204 0.79058 0.77333 1.20619 1.21935 1.21839 1.21488 0.87646 0.93331 0.96993 0.92548 0.92520 0.92733 0.91835 0.91203 0.90657 0.90298 0.89103 0.88612 0.87593 0.88547 0.80806 0.80683 0.93018 0.90288 0.87601 0.97395 0.93985 0.94300 0.96802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.14 -1.26 6.26 -26.73 -0.17 -1.42 16 3 C 0.11 1.07 5.20 -4.04 -0.02 1.05 16 4 N -0.61 -8.71 2.54 -164.03 -0.42 -9.13 16 5 C 0.51 7.84 6.77 -10.98 -0.07 7.77 16 6 O -0.50 -10.30 12.34 5.56 0.07 -10.24 16 7 C -0.13 -1.46 4.23 -27.88 -0.12 -1.58 16 8 C -0.03 -0.38 5.09 -27.88 -0.14 -0.52 16 9 C 0.06 0.68 6.64 -13.46 -0.09 0.59 16 10 N -0.47 -5.64 10.54 -11.86 -0.13 -5.76 16 11 C 0.04 0.37 11.35 -19.18 -0.22 0.15 16 12 C -0.27 -2.06 11.37 29.12 0.33 -1.73 16 13 S 0.12 1.03 23.18 -107.50 -2.49 -1.47 16 14 C 0.14 2.44 3.43 -66.10 -0.23 2.21 16 15 H 0.09 1.40 7.86 -51.93 -0.41 0.99 16 16 C -0.15 -3.13 6.44 -24.47 -0.16 -3.29 16 17 C 0.16 4.06 5.89 -2.42 -0.01 4.05 16 18 N -0.60 -16.26 3.40 -169.93 -0.58 -16.83 16 19 C -0.21 -6.24 10.27 -15.06 -0.15 -6.40 16 20 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.43 5.49 -17.43 -0.10 -0.53 16 22 N -0.92 -28.12 10.09 55.49 0.56 -27.56 16 23 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 C 0.13 3.00 6.48 -3.06 -0.02 2.98 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.56 7.22 -51.93 -0.38 0.18 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.62 6.44 -51.93 -0.33 0.29 16 34 H 0.08 0.73 7.95 -51.93 -0.41 0.32 16 35 H 0.09 0.82 7.19 -51.93 -0.37 0.44 16 36 H 0.10 0.97 7.40 -51.93 -0.38 0.59 16 37 H 0.11 1.44 8.10 -51.93 -0.42 1.02 16 38 H 0.10 1.14 8.10 -51.93 -0.42 0.71 16 39 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.75 6.04 -51.93 -0.31 1.44 16 43 H 0.11 3.09 5.87 -51.93 -0.31 2.78 16 44 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.04 0.94 6.07 -51.93 -0.32 0.63 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -34.94 385.26 -10.41 -45.36 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.41 Total: -1.00 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.80 Total: 2.67 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.56 Total: -59.28 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.94 -10.41 -45.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493977717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.023 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds