Wall clock time and date at job start Tue Mar 31 2020 19:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00337 * 89.99693 * 4 3 2 6 6 O 1.21282 * 120.00258 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99977 * 0.02562 * 5 4 3 8 8 C 1.53001 * 109.46986 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46723 * 180.02562 * 8 7 5 10 10 N 1.29018 * 124.92132 * 89.69523 * 9 8 7 11 11 C 1.31783 * 117.12604 * 179.81385 * 10 9 8 12 12 C 1.33637 * 114.50083 * 0.47033 * 11 10 9 13 13 S 1.70988 * 124.91115 * 269.99709 * 9 8 7 14 14 C 1.46497 * 119.99929 * 269.99768 * 4 3 2 15 15 H 1.09002 * 110.64361 * 359.29773 * 14 4 3 16 16 C 1.55154 * 110.72494 * 122.44261 * 14 4 3 17 17 C 1.55119 * 101.49032 * 153.73360 * 16 14 4 18 18 N 1.47425 * 104.94262 * 323.22283 * 17 16 14 19 19 C 1.36937 * 125.64976 * 204.03738 * 18 17 16 20 20 H 1.07996 * 120.00414 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99686 * 359.95844 * 19 18 17 22 22 N 1.31614 * 120.00296 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99706 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47305 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46891 * 119.99975 * 23 21 19 26 26 H 1.48501 * 109.47546 * 240.00100 * 23 21 19 27 27 C 1.47025 * 108.70178 * 24.00433 * 18 17 16 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 1.08999 * 109.46394 * 300.00002 * 7 5 4 36 36 H 1.08997 * 109.47055 * 59.99479 * 7 5 4 37 37 H 1.09002 * 109.47043 * 299.99300 * 8 7 5 38 38 H 1.08992 * 109.46986 * 60.00032 * 8 7 5 39 39 H 1.08010 * 122.74902 * 180.22937 * 11 10 9 40 40 H 1.07999 * 126.03741 * 179.72428 * 12 11 10 41 41 H 1.08998 * 111.00613 * 271.94357 * 16 14 4 42 42 H 1.09000 * 111.00283 * 35.78810 * 16 14 4 43 43 H 1.08997 * 110.41832 * 204.29390 * 17 16 14 44 44 H 1.09005 * 110.20673 * 82.04529 * 17 16 14 45 45 H 0.97007 * 120.00196 * 179.97438 * 22 21 19 46 46 H 1.09006 * 109.87788 * 239.52246 * 27 18 17 47 47 H 1.09001 * 110.00915 * 118.43148 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.4425 -1.1680 6 8 5.3912 1.4430 -1.1685 7 6 3.4244 1.4433 -2.4729 8 6 4.4182 1.4426 -3.6362 9 6 3.6642 1.4439 -4.9410 10 7 3.2910 2.5025 -5.5772 11 6 2.6416 2.3249 -6.7101 12 6 2.4481 1.0453 -7.0434 13 16 3.1730 0.0427 -5.7888 14 6 4.2380 1.4423 1.2678 15 1 3.5471 1.4547 2.1108 16 6 5.1866 0.2176 1.3535 17 6 6.2810 0.7415 2.3200 18 7 6.4452 2.1648 1.9726 19 6 7.5654 2.9182 2.2019 20 1 7.5868 3.9574 1.9084 21 6 8.6735 2.3464 2.8118 22 7 8.6473 1.0803 3.1702 23 14 10.2019 3.3740 3.1240 24 1 9.9776 4.7571 2.6319 25 1 10.4867 3.4076 4.5810 26 1 11.3564 2.7745 2.4076 27 6 5.2072 2.6411 1.3385 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 2.7974 0.5535 -2.5306 36 1 2.7980 2.3335 -2.5301 37 1 5.0456 2.3321 -3.5786 38 1 5.0441 0.5521 -3.5787 39 1 2.2909 3.1464 -7.3175 40 1 1.9372 0.6888 -7.9255 41 1 4.6720 -0.6467 1.7733 42 1 5.6097 -0.0180 0.3770 43 1 7.2156 0.2027 2.1641 44 1 5.9509 0.6389 3.3537 45 1 9.4218 0.6806 3.5961 46 1 5.4216 3.0043 0.3333 47 1 4.7661 3.4398 1.9349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493977717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:03 Heat of formation + Delta-G solvation = 15.797792 kcal Electronic energy + Delta-G solvation = -27414.861037 eV Core-core repulsion = 23724.533739 eV Total energy + Delta-G solvation = -3690.327298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45858 -40.56361 -38.56345 -37.08040 -35.09223 -34.36942 -33.22021 -31.18813 -30.57036 -29.05637 -27.41913 -26.87771 -26.03597 -24.25573 -22.70388 -22.19253 -21.95709 -20.82180 -19.70339 -19.02634 -18.84796 -17.98986 -17.21003 -16.71793 -16.64671 -16.37758 -15.92498 -15.63530 -15.49352 -15.15106 -15.06666 -14.70713 -14.36560 -14.18562 -13.88631 -13.72985 -13.63417 -13.40657 -13.17111 -12.98082 -12.92311 -12.73158 -12.67502 -12.43718 -12.38306 -12.22155 -12.12635 -11.99174 -11.96984 -11.81657 -11.56486 -11.31250 -10.74233 -10.61822 -10.49363 -10.34635 -9.81031 -9.54876 -8.84525 -7.76246 -5.19491 -0.25566 0.42599 0.82946 1.43154 1.45842 1.55811 1.71998 1.84042 2.03466 2.50366 3.11946 3.32544 3.58590 3.76889 3.89506 3.92870 3.97776 4.06353 4.09940 4.22738 4.26463 4.31838 4.43111 4.47098 4.52708 4.57765 4.63691 4.70633 4.74997 4.79478 4.84830 4.97822 5.01821 5.03395 5.03722 5.10440 5.25426 5.29293 5.33103 5.43591 5.53437 5.65524 5.79339 5.82755 6.31920 6.52727 6.80676 7.11997 7.32453 7.79838 8.43767 9.25737 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.002998 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.760201 B = 9337.577243 C =10901.082046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.102 3.898 4 N -0.601 5.601 5 C 0.502 3.498 6 O -0.563 6.563 7 C -0.115 4.115 8 C -0.027 4.027 9 C 0.036 3.964 10 N -0.503 5.503 11 C 0.018 3.982 12 C -0.250 4.250 13 S 0.148 5.852 14 C 0.153 3.847 15 H 0.114 0.886 16 C -0.136 4.136 17 C 0.161 3.839 18 N -0.618 5.618 19 C -0.234 4.234 20 H 0.072 0.928 21 C -0.069 4.069 22 N -0.949 5.949 23 Si 0.981 3.019 24 H -0.270 1.270 25 H -0.286 1.286 26 H -0.292 1.292 27 C 0.130 3.870 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.195 0.805 40 H 0.208 0.792 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.065 0.935 44 H -0.006 1.006 45 H 0.246 0.754 46 H 0.020 0.980 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.251 -4.422 -17.910 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C -0.019 4.019 4 N -0.333 5.333 5 C 0.291 3.709 6 O -0.442 6.442 7 C -0.156 4.156 8 C -0.069 4.069 9 C -0.241 4.241 10 N -0.219 5.219 11 C -0.132 4.132 12 C -0.389 4.389 13 S 0.401 5.599 14 C 0.049 3.951 15 H 0.132 0.868 16 C -0.175 4.175 17 C 0.036 3.964 18 N -0.344 5.344 19 C -0.364 4.364 20 H 0.090 0.910 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.809 3.191 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.219 1.219 27 C 0.003 3.997 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.212 0.788 40 H 0.225 0.775 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.012 0.988 45 H 0.056 0.944 46 H 0.038 0.962 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -22.225 -4.953 -17.447 28.686 hybrid contribution 1.040 1.294 -0.067 1.662 sum -21.184 -3.659 -17.514 27.729 Atomic orbital electron populations 1.21669 0.93521 1.02424 1.02645 1.21937 0.97249 0.96138 1.02480 1.22013 0.76747 0.98191 1.04956 1.48030 1.07808 1.72938 1.04485 1.21118 0.87779 0.75648 0.86320 1.90829 1.16002 1.49564 1.87776 1.21627 0.98450 1.06427 0.89124 1.19859 0.95967 1.04646 0.86395 1.26926 1.03272 0.91970 1.01901 1.66292 1.13951 1.32679 1.08968 1.22209 0.99617 0.97807 0.93554 1.27516 1.09457 0.95903 1.06014 1.84014 1.49232 1.11543 1.15130 1.21882 0.92835 0.94298 0.86101 0.86767 1.23177 0.96975 0.97197 1.00195 1.21630 0.97241 0.84710 0.92853 1.44576 1.11623 1.08503 1.69672 1.19425 0.91588 0.93437 1.31900 0.90973 1.25630 1.01215 0.97748 1.01557 1.70072 1.29854 1.12318 1.47653 0.84966 0.79010 0.77931 0.77163 1.19436 1.21301 1.21885 1.21620 0.87190 0.95515 0.95353 0.92166 0.92145 0.91554 0.91774 0.92434 0.88321 0.89055 0.86190 0.87100 0.90511 0.89285 0.78797 0.77480 0.89886 0.92266 0.91652 0.98800 0.94375 0.96248 0.96272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.14 -1.98 6.26 30.59 0.19 -1.79 16 3 C 0.10 1.70 5.20 86.38 0.45 2.15 16 4 N -0.60 -16.41 2.54 -791.26 -2.01 -18.41 16 5 C 0.50 15.43 6.77 87.66 0.59 16.02 16 6 O -0.56 -24.05 12.34 -3.04 -0.04 -24.09 16 7 C -0.12 -2.41 4.23 29.85 0.13 -2.28 16 8 C -0.03 -0.66 5.09 29.85 0.15 -0.51 16 9 C 0.04 0.76 6.64 88.52 0.59 1.35 16 10 N -0.50 -11.46 10.54 -191.43 -2.02 -13.48 16 11 C 0.02 0.30 11.35 83.66 0.95 1.24 16 12 C -0.25 -3.08 11.37 66.78 0.76 -2.32 16 13 S 0.15 2.22 23.18 -56.49 -1.31 0.92 16 14 C 0.15 5.41 3.43 46.18 0.16 5.57 16 15 H 0.11 3.43 7.86 -2.39 -0.02 3.41 16 16 C -0.14 -5.59 6.44 32.06 0.21 -5.39 16 17 C 0.16 8.60 5.89 86.93 0.51 9.11 16 18 N -0.62 -35.02 3.40 -691.55 -2.35 -37.37 16 19 C -0.23 -14.38 10.27 84.03 0.86 -13.51 16 20 H 0.07 4.33 7.83 -2.91 -0.02 4.30 16 21 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 22 N -0.95 -59.94 10.09 21.65 0.22 -59.72 16 23 Si 0.98 48.84 29.55 68.60 2.03 50.87 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 26 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 27 C 0.13 5.98 6.48 86.73 0.56 6.54 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.92 7.22 -2.39 -0.02 0.90 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.23 6.44 -2.39 -0.02 1.22 16 34 H 0.09 1.35 7.95 -2.39 -0.02 1.33 16 35 H 0.12 1.82 7.19 -2.39 -0.02 1.80 16 36 H 0.11 2.02 7.40 -2.39 -0.02 2.00 16 37 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 38 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 39 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.06 2.70 6.04 -2.39 -0.01 2.68 16 43 H 0.07 4.03 5.87 -2.39 -0.01 4.01 16 44 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 45 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 46 H 0.02 0.98 6.07 -2.38 -0.01 0.96 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -81.06 385.26 2.77 -78.29 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.96 Total: 11.29 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 7.29 Total: 11.70 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -6.16 Total: -128.98 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.31 Total: 0.92 kcal Total: -81.06 2.77 -78.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493977717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.092 kcal (2) G-P(sol) polarization free energy of solvation -81.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds