Wall clock time and date at job start Tue Mar 31 2020 19:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46947 * 2 1 4 4 H 1.08999 * 109.47226 * 55.12294 * 3 2 1 5 5 C 1.52997 * 109.46838 * 175.11973 * 3 2 1 6 6 N 1.46498 * 109.46931 * 174.99776 * 5 3 2 7 7 C 1.34776 * 120.00211 * 179.72535 * 6 5 3 8 8 O 1.21284 * 119.99841 * 0.27933 * 7 6 5 9 9 C 1.50701 * 120.00280 * 180.28137 * 7 6 5 10 10 S 1.81004 * 109.47157 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00126 * 179.97438 * 10 9 7 12 12 H 1.08010 * 119.99651 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00309 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00167 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99624 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47232 * 90.00317 * 15 13 11 17 17 H 1.48502 * 109.46603 * 209.99963 * 15 13 11 18 18 H 1.48490 * 109.47211 * 329.99803 * 15 13 11 19 19 N 1.46901 * 109.46936 * 295.12008 * 3 2 1 20 20 C 1.46896 * 110.99983 * 297.26443 * 19 3 2 21 21 C 1.50706 * 109.46874 * 181.16405 * 20 19 3 22 22 C 1.38226 * 120.41937 * 269.72764 * 21 20 19 23 23 N 1.31857 * 120.76338 * 179.73447 * 22 21 20 24 24 C 1.31881 * 121.72444 * 0.57041 * 23 22 21 25 25 C 1.38185 * 120.76298 * 359.69283 * 24 23 22 26 26 C 1.50703 * 120.41220 * 180.02562 * 25 24 23 27 27 C 1.38620 * 120.41942 * 90.00472 * 21 20 19 28 28 H 1.09003 * 109.46834 * 175.50499 * 1 2 3 29 29 H 1.09001 * 109.47069 * 295.50894 * 1 2 3 30 30 H 1.09003 * 109.47032 * 55.50601 * 1 2 3 31 31 H 1.08999 * 109.47352 * 240.00419 * 2 1 3 32 32 H 1.08996 * 109.47074 * 120.00023 * 2 1 3 33 33 H 1.09010 * 109.47136 * 55.00255 * 5 3 2 34 34 H 1.08996 * 109.47830 * 295.00026 * 5 3 2 35 35 H 0.97004 * 119.99957 * 0.02562 * 6 5 3 36 36 H 1.09002 * 109.46816 * 299.99493 * 9 7 6 37 37 H 1.08993 * 109.47647 * 59.99710 * 9 7 6 38 38 H 0.96998 * 120.00305 * 179.97438 * 14 13 11 39 39 H 1.00901 * 110.99341 * 173.31275 * 19 3 2 40 40 H 1.08993 * 109.47748 * 301.16329 * 20 19 3 41 41 H 1.08999 * 109.46981 * 61.17058 * 20 19 3 42 42 H 1.08001 * 119.61582 * 0.02562 * 22 21 20 43 43 H 1.07994 * 119.62106 * 179.70682 * 24 23 22 44 44 H 1.09002 * 109.47075 * 269.97159 * 26 25 24 45 45 H 1.08995 * 109.47474 * 29.97633 * 26 25 24 46 46 H 1.09005 * 109.46737 * 149.97763 * 26 25 24 47 47 H 1.08004 * 120.79058 * 359.94723 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6071 1.9810 0.8431 5 6 3.5650 1.4443 0.1227 6 7 4.0630 2.8168 0.0029 7 6 5.3853 3.0637 0.0863 8 8 6.1634 2.1489 0.2556 9 6 5.8970 4.4763 -0.0306 10 16 7.7008 4.4791 0.1203 11 6 8.0194 6.2037 -0.0489 12 1 7.2002 6.8924 -0.1954 13 6 9.3228 6.6775 0.0071 14 7 9.5608 7.9658 -0.1198 15 14 10.7393 5.4865 0.2611 16 1 11.2313 5.0140 -1.0579 17 1 11.8402 6.1737 0.9829 18 1 10.2724 4.3254 1.0603 19 7 1.6488 2.1002 -1.2540 20 6 2.2681 1.4391 -2.4105 21 6 1.8675 2.1573 -3.6735 22 6 0.7335 1.7760 -4.3658 23 7 0.3740 2.4029 -5.4686 24 6 1.0798 3.4030 -5.9593 25 6 2.2282 3.8361 -5.3244 26 6 3.0284 4.9801 -5.8918 27 6 2.6348 3.2048 -4.1587 28 1 -0.3633 -1.0246 -0.0805 29 1 -0.3633 0.4426 0.9275 30 1 -0.3633 0.5820 -0.8470 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9941 0.8316 -0.6703 34 1 3.8521 1.0370 1.0921 35 1 3.4406 3.5485 -0.1322 36 1 5.6133 4.8864 -0.9999 37 1 5.4648 5.0862 0.7626 38 1 10.4716 8.2970 -0.0803 39 1 1.8778 3.0827 -1.2337 40 1 3.3527 1.4651 -2.3062 41 1 1.9324 0.4033 -2.4596 42 1 0.1325 0.9581 -3.9965 43 1 0.7564 3.8894 -6.8678 44 1 3.7779 4.5923 -6.5817 45 1 2.3631 5.6607 -6.4231 46 1 3.5232 5.5148 -5.0809 47 1 3.5279 3.5222 -3.6407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494941093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:54 Heat of formation + Delta-G solvation = -15.242907 kcal Electronic energy + Delta-G solvation = -26419.021650 eV Core-core repulsion = 22727.348327 eV Total energy + Delta-G solvation = -3691.673324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.63000 -39.71238 -38.09909 -34.32281 -33.80725 -33.67963 -32.49290 -31.32235 -30.02414 -27.83448 -27.52199 -26.02086 -25.65031 -23.55712 -23.27435 -21.69967 -20.53762 -20.07254 -18.01085 -17.37368 -17.06596 -16.75572 -16.51075 -16.14728 -15.54866 -15.08093 -15.00946 -14.49765 -14.39498 -14.02700 -13.95897 -13.86939 -13.62152 -13.37029 -13.26062 -13.11005 -12.90677 -12.84575 -12.70107 -12.60482 -12.38778 -11.91428 -11.72945 -11.48337 -11.32228 -11.23979 -11.05770 -11.00895 -10.67103 -9.91407 -9.90061 -9.68953 -9.63847 -9.14867 -9.08755 -9.04668 -8.79469 -8.56864 -6.98474 -6.34159 -4.06589 0.83174 1.03554 2.66956 2.86006 3.20419 3.28782 3.45598 3.46278 3.57800 3.92015 4.20090 4.28019 4.36540 4.42705 4.50775 4.61000 4.70511 4.74085 4.75155 4.80914 4.88168 5.04904 5.07535 5.13190 5.14933 5.19050 5.35006 5.36392 5.45088 5.45906 5.52288 5.60039 5.65671 5.67128 5.73120 5.78756 5.89366 5.91141 5.98486 6.02856 6.08562 6.33863 6.45590 6.57393 6.90484 7.43423 7.74149 7.88796 8.35756 8.36743 9.11928 10.75063 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010262 B = 0.002973 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.815862 B = 9415.958381 C =11660.156002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.076 3.924 4 H 0.093 0.907 5 C 0.084 3.916 6 N -0.738 5.738 7 C 0.531 3.469 8 O -0.516 6.516 9 C -0.124 4.124 10 S -0.140 6.140 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.856 3.144 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.670 5.670 20 C 0.093 3.907 21 C -0.128 4.128 22 C 0.110 3.890 23 N -0.484 5.484 24 C 0.094 3.906 25 C -0.133 4.133 26 C -0.114 4.114 27 C -0.071 4.071 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.395 0.605 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.341 0.659 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.547 -12.372 -6.249 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.034 4.034 4 H 0.111 0.889 5 C -0.042 4.042 6 N -0.394 5.394 7 C 0.316 3.684 8 O -0.390 6.390 9 C -0.275 4.275 10 S 0.086 5.914 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.301 5.301 20 C -0.036 4.036 21 C -0.131 4.131 22 C -0.048 4.048 23 N -0.191 5.191 24 C -0.063 4.063 25 C -0.135 4.135 26 C -0.171 4.171 27 C -0.097 4.097 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.229 0.771 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.160 0.840 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.470 -14.378 -6.459 25.835 hybrid contribution 1.317 1.845 0.380 2.298 sum -19.153 -12.533 -6.079 23.683 Atomic orbital electron populations 1.21660 0.94690 1.01228 1.02575 1.21527 0.97120 0.94262 1.02390 1.21952 0.91582 0.97090 0.92766 0.88889 1.22058 0.95202 0.84067 1.02909 1.45964 1.07712 1.09009 1.76697 1.20297 0.81532 0.91035 0.75493 1.90712 1.55392 1.46183 1.46725 1.23277 1.03215 0.95384 1.05625 1.84818 0.97930 1.12941 1.95714 1.22302 0.97252 0.89781 1.57663 0.89397 1.24707 0.98268 0.95037 0.93237 1.69931 1.21526 1.12509 1.47628 0.86744 0.82448 0.82515 0.80205 1.19192 1.19878 1.15939 1.60738 1.61512 1.06726 1.01108 1.20934 0.97681 0.98243 0.86773 1.20763 0.96802 0.97631 0.97869 1.22598 0.93621 0.98047 0.90509 1.67695 1.31451 1.07687 1.12301 1.22666 0.91303 0.93320 0.99021 1.20963 0.97419 0.98920 0.96199 1.20766 0.99458 0.95277 1.01595 1.21497 0.99004 0.94152 0.95081 0.93269 0.93079 0.91257 0.91571 0.91334 0.91250 0.91019 0.77091 0.88670 0.88457 0.91883 0.84037 0.93047 0.89355 0.82945 0.83000 0.90713 0.91114 0.90877 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.85 37.16 0.37 -0.53 16 2 C -0.11 -0.73 5.25 -26.73 -0.14 -0.87 16 3 C 0.08 0.53 2.72 -67.71 -0.18 0.35 16 4 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 5 C 0.08 0.81 4.56 -4.04 -0.02 0.80 16 6 N -0.74 -8.27 5.36 -60.29 -0.32 -8.60 16 7 C 0.53 8.81 7.85 -10.99 -0.09 8.72 16 8 O -0.52 -10.69 15.86 5.55 0.09 -10.60 16 9 C -0.12 -2.28 6.16 36.01 0.22 -2.06 16 10 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 11 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 12 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 13 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.18 13.97 55.49 0.78 -25.41 16 15 Si 0.86 21.48 27.74 -169.99 -4.72 16.76 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 19 N -0.67 -4.71 5.73 -107.99 -0.62 -5.33 16 20 C 0.09 0.72 5.06 -4.97 -0.03 0.69 16 21 C -0.13 -1.15 5.40 -104.48 -0.56 -1.71 16 22 C 0.11 1.05 10.86 -17.55 -0.19 0.86 16 23 N -0.48 -5.26 10.36 -13.25 -0.14 -5.40 16 24 C 0.09 0.90 10.86 -17.55 -0.19 0.71 16 25 C -0.13 -1.23 5.90 -104.48 -0.62 -1.84 16 26 C -0.11 -0.86 10.04 36.01 0.36 -0.50 16 27 C -0.07 -0.67 9.54 -39.28 -0.37 -1.05 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.48 7.63 -51.93 -0.40 0.09 16 31 H 0.07 0.43 6.25 -51.93 -0.32 0.10 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.75 6.63 -51.92 -0.34 0.41 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.39 3.41 7.19 -40.82 -0.29 3.11 16 36 H 0.10 1.60 8.14 -51.91 -0.42 1.18 16 37 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.34 2.41 7.34 -39.29 -0.29 2.12 16 40 H 0.05 0.47 6.25 -51.93 -0.32 0.15 16 41 H 0.09 0.63 6.28 -51.93 -0.33 0.30 16 42 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 46 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 47 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -33.78 397.51 -9.53 -43.31 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.37 Total: 2.93 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.23 Total: -8.19 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.30 Total: -44.74 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.76 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.78 -9.53 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494941093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.062 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds