Wall clock time and date at job start Tue Mar 31 2020 19:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46947 * 2 1 4 4 H 1.08999 * 109.47226 * 55.12294 * 3 2 1 5 5 C 1.52997 * 109.46838 * 175.11973 * 3 2 1 6 6 N 1.46498 * 109.46931 * 174.99776 * 5 3 2 7 7 C 1.34776 * 120.00211 * 179.72535 * 6 5 3 8 8 O 1.21284 * 119.99841 * 0.27933 * 7 6 5 9 9 C 1.50701 * 120.00280 * 180.28137 * 7 6 5 10 10 S 1.81004 * 109.47157 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00126 * 179.97438 * 10 9 7 12 12 H 1.08010 * 119.99651 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00309 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00167 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99624 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47232 * 90.00317 * 15 13 11 17 17 H 1.48502 * 109.46603 * 209.99963 * 15 13 11 18 18 H 1.48490 * 109.47211 * 329.99803 * 15 13 11 19 19 N 1.46901 * 109.46936 * 295.12008 * 3 2 1 20 20 C 1.46896 * 110.99983 * 297.26443 * 19 3 2 21 21 C 1.50706 * 109.46874 * 181.16405 * 20 19 3 22 22 C 1.38226 * 120.41937 * 269.72764 * 21 20 19 23 23 N 1.31857 * 120.76338 * 179.73447 * 22 21 20 24 24 C 1.31881 * 121.72444 * 0.57041 * 23 22 21 25 25 C 1.38185 * 120.76298 * 359.69283 * 24 23 22 26 26 C 1.50703 * 120.41220 * 180.02562 * 25 24 23 27 27 C 1.38620 * 120.41942 * 90.00472 * 21 20 19 28 28 H 1.09003 * 109.46834 * 175.50499 * 1 2 3 29 29 H 1.09001 * 109.47069 * 295.50894 * 1 2 3 30 30 H 1.09003 * 109.47032 * 55.50601 * 1 2 3 31 31 H 1.08999 * 109.47352 * 240.00419 * 2 1 3 32 32 H 1.08996 * 109.47074 * 120.00023 * 2 1 3 33 33 H 1.09010 * 109.47136 * 55.00255 * 5 3 2 34 34 H 1.08996 * 109.47830 * 295.00026 * 5 3 2 35 35 H 0.97004 * 119.99957 * 0.02562 * 6 5 3 36 36 H 1.09002 * 109.46816 * 299.99493 * 9 7 6 37 37 H 1.08993 * 109.47647 * 59.99710 * 9 7 6 38 38 H 0.96998 * 120.00305 * 179.97438 * 14 13 11 39 39 H 1.00901 * 110.99341 * 173.31275 * 19 3 2 40 40 H 1.08993 * 109.47748 * 301.16329 * 20 19 3 41 41 H 1.08999 * 109.46981 * 61.17058 * 20 19 3 42 42 H 1.08001 * 119.61582 * 0.02562 * 22 21 20 43 43 H 1.07994 * 119.62106 * 179.70682 * 24 23 22 44 44 H 1.09002 * 109.47075 * 269.97159 * 26 25 24 45 45 H 1.08995 * 109.47474 * 29.97633 * 26 25 24 46 46 H 1.09005 * 109.46737 * 149.97763 * 26 25 24 47 47 H 1.08004 * 120.79058 * 359.94723 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6071 1.9810 0.8431 5 6 3.5650 1.4443 0.1227 6 7 4.0630 2.8168 0.0029 7 6 5.3853 3.0637 0.0863 8 8 6.1634 2.1489 0.2556 9 6 5.8970 4.4763 -0.0306 10 16 7.7008 4.4791 0.1203 11 6 8.0194 6.2037 -0.0489 12 1 7.2002 6.8924 -0.1954 13 6 9.3228 6.6775 0.0071 14 7 9.5608 7.9658 -0.1198 15 14 10.7393 5.4865 0.2611 16 1 11.2313 5.0140 -1.0579 17 1 11.8402 6.1737 0.9829 18 1 10.2724 4.3254 1.0603 19 7 1.6488 2.1002 -1.2540 20 6 2.2681 1.4391 -2.4105 21 6 1.8675 2.1573 -3.6735 22 6 0.7335 1.7760 -4.3658 23 7 0.3740 2.4029 -5.4686 24 6 1.0798 3.4030 -5.9593 25 6 2.2282 3.8361 -5.3244 26 6 3.0284 4.9801 -5.8918 27 6 2.6348 3.2048 -4.1587 28 1 -0.3633 -1.0246 -0.0805 29 1 -0.3633 0.4426 0.9275 30 1 -0.3633 0.5820 -0.8470 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9941 0.8316 -0.6703 34 1 3.8521 1.0370 1.0921 35 1 3.4406 3.5485 -0.1322 36 1 5.6133 4.8864 -0.9999 37 1 5.4648 5.0862 0.7626 38 1 10.4716 8.2970 -0.0803 39 1 1.8778 3.0827 -1.2337 40 1 3.3527 1.4651 -2.3062 41 1 1.9324 0.4033 -2.4596 42 1 0.1325 0.9581 -3.9965 43 1 0.7564 3.8894 -6.8678 44 1 3.7779 4.5923 -6.5817 45 1 2.3631 5.6607 -6.4231 46 1 3.5232 5.5148 -5.0809 47 1 3.5279 3.5222 -3.6407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494941093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:53 Heat of formation + Delta-G solvation = -38.558120 kcal Electronic energy + Delta-G solvation = -26420.032674 eV Core-core repulsion = 22727.348327 eV Total energy + Delta-G solvation = -3692.684347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.36252 -40.82330 -38.98831 -35.32501 -34.68637 -34.49811 -34.40737 -32.00831 -31.28109 -28.72590 -28.18558 -27.84880 -26.70197 -24.28333 -23.97580 -22.39607 -21.74681 -20.73475 -19.89925 -18.15734 -17.91523 -17.68289 -17.47144 -17.33983 -17.05673 -16.60954 -15.96503 -15.67575 -15.26440 -15.06862 -14.96310 -14.81794 -14.76353 -14.47523 -14.16277 -13.98888 -13.77815 -13.73196 -13.56456 -13.36343 -13.21152 -13.20390 -13.03115 -12.81119 -12.71246 -12.30897 -12.14180 -11.88792 -11.76796 -11.55565 -11.18711 -11.05140 -10.62283 -10.55328 -10.41351 -10.22390 -9.77515 -9.44381 -9.01431 -8.53028 -6.23843 0.13440 0.30819 0.96859 1.29757 1.44993 1.51683 1.53767 2.15842 2.23658 2.68797 2.77095 2.85479 3.26034 3.55066 3.68817 3.77505 3.81238 3.84910 4.02030 4.06423 4.06942 4.17263 4.22490 4.25850 4.43202 4.44599 4.47898 4.58915 4.70834 4.75573 4.78415 4.80600 4.90698 4.95360 5.01963 5.18191 5.24951 5.28808 5.31258 5.34025 5.38953 5.59553 5.69293 5.77691 5.93094 6.10140 6.28813 6.36654 6.92401 7.02764 7.12499 8.59361 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010262 B = 0.002973 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.815862 B = 9415.958381 C =11660.156002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.089 3.911 4 H 0.104 0.896 5 C 0.085 3.915 6 N -0.711 5.711 7 C 0.536 3.464 8 O -0.561 6.561 9 C -0.112 4.112 10 S -0.175 6.175 11 C -0.528 4.528 12 H 0.063 0.937 13 C 0.047 3.953 14 N -0.917 5.917 15 Si 0.913 3.087 16 H -0.262 1.262 17 H -0.260 1.260 18 H -0.237 1.237 19 N -0.664 5.664 20 C 0.100 3.900 21 C -0.126 4.126 22 C 0.101 3.899 23 N -0.506 5.506 24 C 0.084 3.916 25 C -0.138 4.138 26 C -0.112 4.112 27 C -0.084 4.084 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.411 0.589 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.277 0.723 39 H 0.342 0.658 40 H 0.038 0.962 41 H 0.098 0.902 42 H 0.167 0.833 43 H 0.171 0.829 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 -13.445 -6.145 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.021 4.021 4 H 0.122 0.878 5 C -0.041 4.041 6 N -0.366 5.366 7 C 0.322 3.678 8 O -0.438 6.438 9 C -0.262 4.262 10 S 0.051 5.949 11 C -0.675 4.675 12 H 0.081 0.919 13 C -0.159 4.159 14 N -0.555 5.555 15 Si 0.735 3.265 16 H -0.187 1.187 17 H -0.184 1.184 18 H -0.161 1.161 19 N -0.295 5.295 20 C -0.029 4.029 21 C -0.128 4.128 22 C -0.056 4.056 23 N -0.214 5.214 24 C -0.073 4.073 25 C -0.140 4.140 26 C -0.169 4.169 27 C -0.110 4.110 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.248 0.752 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.161 0.839 40 H 0.056 0.944 41 H 0.116 0.884 42 H 0.185 0.815 43 H 0.188 0.812 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.845 -15.434 -6.360 27.493 hybrid contribution 1.542 2.175 0.313 2.685 sum -20.302 -13.259 -6.047 24.991 Atomic orbital electron populations 1.21607 0.94272 1.01465 1.02322 1.21526 0.97319 0.93605 1.02701 1.21918 0.89297 0.97894 0.92998 0.87789 1.22206 0.97045 0.82518 1.02282 1.45693 1.06030 1.10548 1.74321 1.19938 0.82889 0.89540 0.75458 1.90703 1.56878 1.46947 1.49320 1.23265 0.98274 0.97412 1.07291 1.84746 1.04115 1.10100 1.95901 1.22450 0.96742 0.91425 1.56926 0.91890 1.25541 1.00732 0.96512 0.93110 1.70008 1.22488 1.14106 1.48866 0.85892 0.79783 0.80506 0.80360 1.18702 1.18430 1.16083 1.60746 1.61123 1.06783 1.00878 1.20858 0.96788 0.98677 0.86529 1.20832 0.96503 0.97380 0.98133 1.22866 0.94009 0.98400 0.90348 1.67708 1.32241 1.08430 1.13039 1.22999 0.91352 0.93237 0.99693 1.21153 0.97474 0.99220 0.96128 1.20785 0.99612 0.94991 1.01538 1.21642 0.99238 0.94633 0.95514 0.92771 0.92935 0.91923 0.91540 0.90864 0.92032 0.91626 0.75181 0.86848 0.86921 0.91361 0.83875 0.94360 0.88421 0.81541 0.81232 0.90402 0.89686 0.91374 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.85 71.98 0.71 -0.68 16 2 C -0.11 -1.17 5.25 30.60 0.16 -1.01 16 3 C 0.09 1.02 2.72 44.92 0.12 1.14 16 4 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 5 C 0.08 1.49 4.56 86.38 0.39 1.89 16 6 N -0.71 -14.45 5.36 -463.06 -2.48 -16.93 16 7 C 0.54 17.03 7.85 87.66 0.69 17.72 16 8 O -0.56 -22.82 15.86 -3.04 -0.05 -22.87 16 9 C -0.11 -3.95 6.16 71.24 0.44 -3.51 16 10 S -0.18 -8.59 18.55 -56.49 -1.05 -9.64 16 11 C -0.53 -30.04 10.04 67.95 0.68 -29.36 16 12 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 13 C 0.05 2.69 5.50 84.86 0.47 3.16 16 14 N -0.92 -55.10 13.97 21.65 0.30 -54.80 16 15 Si 0.91 44.35 27.74 68.60 1.90 46.25 16 16 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.24 -11.49 6.74 99.48 0.67 -10.82 16 19 N -0.66 -7.84 5.73 -495.58 -2.84 -10.68 16 20 C 0.10 1.39 5.06 85.56 0.43 1.82 16 21 C -0.13 -2.10 5.40 -19.77 -0.11 -2.21 16 22 C 0.10 1.80 10.86 84.69 0.92 2.72 16 23 N -0.51 -10.52 10.36 -195.85 -2.03 -12.55 16 24 C 0.08 1.52 10.86 84.67 0.92 2.44 16 25 C -0.14 -2.41 5.90 -19.77 -0.12 -2.52 16 26 C -0.11 -1.58 10.04 71.24 0.72 -0.87 16 27 C -0.08 -1.51 9.54 22.46 0.21 -1.29 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.73 7.63 -2.39 -0.02 0.71 16 31 H 0.07 0.70 6.25 -2.39 -0.01 0.69 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 1.24 6.63 -2.38 -0.02 1.23 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.41 5.95 7.19 -92.71 -0.67 5.28 16 36 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 37 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 38 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.34 3.99 7.34 -89.69 -0.66 3.33 16 40 H 0.04 0.65 6.25 -2.39 -0.01 0.63 16 41 H 0.10 1.19 6.28 -2.39 -0.01 1.17 16 42 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 43 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 46 H 0.07 1.02 8.10 -2.38 -0.02 1.00 16 47 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -73.08 397.51 0.02 -73.06 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.38 Total: 18.73 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 6.64 Total: -10.57 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -7.05 Total: -94.96 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.64 kcal Total: -73.08 0.02 -73.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494941093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.498 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds