Wall clock time and date at job start Tue Mar 31 2020 19:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46776 * 2 1 4 4 H 1.09000 * 109.47246 * 305.22619 * 3 2 1 5 5 C 1.52996 * 109.46824 * 185.23187 * 3 2 1 6 6 N 1.46504 * 109.46915 * 184.99722 * 5 3 2 7 7 C 1.34779 * 119.99948 * 179.97438 * 6 5 3 8 8 O 1.21285 * 120.00081 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99911 * 180.02562 * 7 6 5 10 10 S 1.81005 * 109.47038 * 180.02562 * 9 7 6 11 11 C 1.76201 * 100.00028 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00128 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00042 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99716 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99924 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47285 * 59.99730 * 15 13 11 17 17 H 1.48509 * 109.46929 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47166 * 299.99086 * 15 13 11 19 19 N 1.46901 * 109.47378 * 65.22659 * 3 2 1 20 20 C 1.46897 * 110.99878 * 58.30498 * 19 3 2 21 21 C 1.50692 * 109.47375 * 174.55746 * 20 19 3 22 22 C 1.38230 * 120.41742 * 270.02156 * 21 20 19 23 23 N 1.31857 * 120.76328 * 179.97438 * 22 21 20 24 24 C 1.31886 * 121.72562 * 0.02562 * 23 22 21 25 25 C 1.38180 * 120.76292 * 359.97438 * 24 23 22 26 26 C 1.50711 * 120.41474 * 180.27896 * 25 24 23 27 27 C 1.38624 * 120.42173 * 89.99935 * 21 20 19 28 28 H 1.09000 * 109.46546 * 175.16949 * 1 2 3 29 29 H 1.08997 * 109.47019 * 295.16751 * 1 2 3 30 30 H 1.09002 * 109.47126 * 55.17339 * 1 2 3 31 31 H 1.08996 * 109.47128 * 239.99805 * 2 1 3 32 32 H 1.08999 * 109.47110 * 119.99324 * 2 1 3 33 33 H 1.09004 * 109.47200 * 304.99241 * 5 3 2 34 34 H 1.08993 * 109.47696 * 64.99617 * 5 3 2 35 35 H 0.96995 * 120.00288 * 359.97438 * 6 5 3 36 36 H 1.09003 * 109.47169 * 299.99373 * 9 7 6 37 37 H 1.08992 * 109.47349 * 60.00160 * 9 7 6 38 38 H 0.97008 * 119.99745 * 180.02562 * 14 13 11 39 39 H 1.00898 * 110.99843 * 294.34620 * 19 3 2 40 40 H 1.09006 * 109.47082 * 54.55254 * 20 19 3 41 41 H 1.09004 * 109.47108 * 294.55555 * 20 19 3 42 42 H 1.07996 * 119.61641 * 359.97438 * 22 21 20 43 43 H 1.08001 * 119.61625 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.46746 * 269.72173 * 26 25 24 45 45 H 1.09002 * 109.46908 * 29.72427 * 26 25 24 46 46 H 1.08996 * 109.46918 * 149.72149 * 26 25 24 47 47 H 1.07996 * 120.79207 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 -0.8395 5 6 3.5643 1.4446 -0.1315 6 7 4.0629 2.8169 -0.0119 7 6 5.3853 3.0632 -0.0965 8 8 6.1626 2.1487 -0.2712 9 6 5.8982 4.4748 0.0272 10 16 7.7016 4.4773 -0.1286 11 6 8.0217 6.2007 0.0497 12 1 7.2036 6.8890 0.2023 13 6 9.3253 6.6740 -0.0071 14 7 10.3224 5.8351 -0.1936 15 14 9.6646 8.5012 0.1812 16 1 9.1729 8.9622 1.5043 17 1 11.1262 8.7458 0.0840 18 1 8.9648 9.2481 -0.8948 19 7 1.6560 2.0977 1.2575 20 6 2.1961 1.3724 2.4152 21 6 1.8970 2.1432 3.6751 22 6 2.7894 3.0879 4.1461 23 7 2.5344 3.7666 5.2474 24 6 1.4284 3.5747 5.9398 25 6 0.4900 2.6470 5.5300 26 6 -0.7741 2.4385 6.3239 27 6 0.7232 1.9142 4.3761 28 1 -0.3632 -1.0240 -0.0865 29 1 -0.3633 0.4370 0.9301 30 1 -0.3633 0.5869 -0.8436 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.9979 0.8304 0.6577 34 1 3.8457 1.0392 -1.1034 35 1 3.4414 3.5483 0.1282 36 1 5.4650 5.0893 -0.7620 37 1 5.6166 4.8799 0.9991 38 1 11.2335 6.1658 -0.2329 39 1 0.6537 2.1915 1.3250 40 1 3.2749 1.2623 2.3040 41 1 1.7344 0.3867 2.4741 42 1 3.7062 3.2721 3.6058 43 1 1.2539 4.1500 6.8371 44 1 -0.6099 1.6621 7.0711 45 1 -1.0485 3.3690 6.8209 46 1 -1.5778 2.1338 5.6537 47 1 0.0075 1.1823 4.0319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494941095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:57 Heat of formation + Delta-G solvation = -15.640044 kcal Electronic energy + Delta-G solvation = -26227.825611 eV Core-core repulsion = 22536.135066 eV Total energy + Delta-G solvation = -3691.690545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59130 -39.40191 -38.07033 -34.22460 -33.85554 -33.53418 -32.36737 -31.16456 -29.85144 -27.75453 -27.58904 -26.02367 -25.40454 -23.46151 -23.33282 -21.68195 -20.29651 -19.92114 -17.75512 -17.36018 -17.03941 -16.70530 -16.22075 -15.94836 -15.34360 -14.97317 -14.75750 -14.73208 -14.43811 -14.21324 -13.90698 -13.81593 -13.44498 -13.30984 -13.17064 -12.99979 -12.95193 -12.83255 -12.67518 -12.50810 -12.29571 -11.84138 -11.61704 -11.56645 -11.25473 -11.12796 -10.98564 -10.98100 -10.71013 -9.92364 -9.76057 -9.61962 -9.31478 -9.07653 -9.00216 -8.79933 -8.70941 -8.16786 -6.42989 -6.15648 -3.85482 0.85967 1.03473 3.11554 3.20891 3.28538 3.32086 3.36343 3.49132 3.78209 3.98781 4.24383 4.26808 4.40575 4.43212 4.47310 4.58713 4.64018 4.67316 4.74884 4.83460 5.02925 5.07082 5.09140 5.17189 5.19430 5.21964 5.29930 5.32111 5.40932 5.50616 5.52627 5.56804 5.65697 5.67454 5.73298 5.83170 5.90816 5.92804 5.99103 6.01120 6.24552 6.47117 6.56707 6.78613 6.96705 7.65664 7.82609 7.89875 8.41421 8.74209 9.29731 10.91745 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.002711 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.063967 B =10325.939877 C =12520.352756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.160 4.160 3 C 0.076 3.924 4 H 0.093 0.907 5 C 0.128 3.872 6 N -0.726 5.726 7 C 0.530 3.470 8 O -0.524 6.524 9 C -0.152 4.152 10 S -0.062 6.062 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.869 5.869 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.673 5.673 20 C 0.095 3.905 21 C -0.127 4.127 22 C 0.119 3.881 23 N -0.478 5.478 24 C 0.096 3.904 25 C -0.143 4.143 26 C -0.108 4.108 27 C -0.074 4.074 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.343 0.657 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.158 0.842 43 H 0.152 0.848 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.447 -11.119 7.428 30.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C -0.034 4.034 4 H 0.111 0.889 5 C 0.003 3.997 6 N -0.381 5.381 7 C 0.316 3.684 8 O -0.399 6.399 9 C -0.302 4.302 10 S 0.165 5.835 11 C -0.682 4.682 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.504 5.504 15 Si 0.744 3.256 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.200 1.200 19 N -0.304 5.304 20 C -0.034 4.034 21 C -0.129 4.129 22 C -0.039 4.039 23 N -0.185 5.185 24 C -0.061 4.061 25 C -0.145 4.145 26 C -0.166 4.166 27 C -0.100 4.100 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.240 0.760 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.162 0.838 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.175 0.825 43 H 0.169 0.831 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.812 -11.590 7.376 28.361 hybrid contribution -2.199 1.130 0.126 2.475 sum -27.011 -10.460 7.502 29.921 Atomic orbital electron populations 1.21758 0.95399 1.02074 1.01673 1.22206 0.96452 0.97934 1.03410 1.21932 0.95349 0.93342 0.92823 0.88886 1.21288 0.91569 0.84910 1.01898 1.45824 1.07536 1.08975 1.75769 1.20302 0.81587 0.90991 0.75524 1.90694 1.55673 1.46201 1.47353 1.23510 1.06491 0.95372 1.04872 1.85355 0.92407 1.10906 1.94827 1.22835 0.95440 0.92525 1.57419 0.90997 1.24983 0.95089 0.98886 0.94630 1.70014 0.99504 1.34590 1.46306 0.86239 0.77297 0.83186 0.78868 1.19907 1.20864 1.19973 1.60563 1.17440 1.51828 1.00599 1.20904 1.01919 0.93765 0.86836 1.20765 0.95586 0.99016 0.97525 1.22781 0.98878 0.90550 0.91666 1.67768 1.19721 1.24387 1.06657 1.22710 0.89265 0.95478 0.98692 1.20896 0.98391 0.98228 0.96987 1.20705 0.93789 1.02658 0.99423 1.21331 0.96339 0.98236 0.94128 0.92409 0.93095 0.92302 0.90769 0.91227 0.91857 0.91320 0.75997 0.89395 0.89239 0.92204 0.83792 0.89014 0.93661 0.82516 0.83058 0.91021 0.91160 0.91498 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.57 37.16 0.36 -0.37 16 2 C -0.16 -0.96 5.15 -26.73 -0.14 -1.09 16 3 C 0.08 0.55 2.70 -67.71 -0.18 0.36 16 4 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 5 C 0.13 1.40 4.72 -4.04 -0.02 1.38 16 6 N -0.73 -9.65 5.39 -60.29 -0.32 -9.97 16 7 C 0.53 9.96 7.85 -10.99 -0.09 9.87 16 8 O -0.52 -11.96 15.86 5.55 0.09 -11.88 16 9 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 10 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 11 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.61 13.22 55.49 0.73 -25.87 16 15 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 N -0.67 -4.82 5.78 -107.99 -0.62 -5.45 16 20 C 0.09 0.75 5.00 -4.98 -0.02 0.72 16 21 C -0.13 -1.16 5.46 -104.49 -0.57 -1.73 16 22 C 0.12 1.40 10.86 -17.54 -0.19 1.20 16 23 N -0.48 -6.08 10.36 -13.25 -0.14 -6.21 16 24 C 0.10 0.95 10.86 -17.55 -0.19 0.76 16 25 C -0.14 -1.15 5.90 -104.48 -0.62 -1.76 16 26 C -0.11 -0.54 10.04 36.01 0.36 -0.18 16 27 C -0.07 -0.58 9.55 -39.28 -0.37 -0.95 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.22 7.15 -51.93 -0.37 -0.15 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.44 6.22 -51.93 -0.32 0.12 16 33 H 0.06 0.75 6.59 -51.93 -0.34 0.41 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.40 4.66 8.14 -40.82 -0.33 4.33 16 36 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 37 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.34 2.08 7.54 -39.29 -0.30 1.79 16 40 H 0.09 0.90 6.14 -51.93 -0.32 0.58 16 41 H 0.05 0.30 6.42 -51.93 -0.33 -0.03 16 42 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 46 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 47 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -35.42 400.67 -10.07 -45.49 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.35 Total: 2.84 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.26 Total: -7.90 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.35 Total: -47.51 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.42 -10.07 -45.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494941095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.851 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds