Wall clock time and date at job start Tue Mar 31 2020 19:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.47054 * 180.02562 * 9 7 6 11 11 C 1.34782 * 119.99892 * 180.02562 * 10 9 7 12 12 O 1.21568 * 119.99833 * 359.97438 * 11 10 9 13 13 C 1.47722 * 119.99767 * 179.97438 * 11 10 9 14 14 C 1.39645 * 120.12008 * 359.72038 * 13 11 10 15 15 C 1.37842 * 119.88107 * 179.74334 * 14 13 11 16 16 C 1.38653 * 120.11329 * 0.51395 * 15 14 13 17 17 F 1.35107 * 119.87989 * 179.74325 * 16 15 14 18 18 C 1.38653 * 120.24371 * 359.76294 * 16 15 14 19 19 C 1.37841 * 120.11827 * 359.97438 * 18 16 15 20 20 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 21 21 C 1.36941 * 119.99583 * 85.00384 * 20 3 2 22 22 H 1.07999 * 120.00378 * 359.97438 * 21 20 3 23 23 C 1.38814 * 119.99657 * 179.97438 * 21 20 3 24 24 N 1.31621 * 119.99842 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00324 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47092 * 89.99724 * 25 23 21 27 27 H 1.48498 * 109.47035 * 210.00114 * 25 23 21 28 28 H 1.48502 * 109.46772 * 329.99889 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 35 35 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 36 36 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 37 37 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 38 38 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 39 39 H 0.96994 * 119.99983 * 359.97438 * 10 9 7 40 40 H 1.08004 * 120.06170 * 359.97438 * 14 13 11 41 41 H 1.07997 * 119.94119 * 180.25750 * 15 14 13 42 42 H 1.08003 * 119.94696 * 179.97438 * 18 16 15 43 43 H 1.08000 * 120.06109 * 179.97438 * 19 18 16 44 44 H 0.96999 * 120.00274 * 264.99733 * 20 3 2 45 45 H 0.97001 * 120.00318 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 7 7.3582 4.4767 0.0844 11 6 8.0394 5.6370 0.0055 12 8 7.4424 6.6820 -0.1659 13 6 9.5116 5.6388 0.1274 14 6 10.1994 4.4405 0.3301 15 6 11.5736 4.4472 0.4379 16 6 12.2720 5.6422 0.3559 17 9 13.6185 5.6439 0.4673 18 6 11.5936 6.8355 0.1604 19 6 10.2200 6.8395 0.0459 20 7 1.6525 2.0974 -1.2519 21 6 0.4156 2.6734 -1.3689 22 1 -0.2743 2.6446 -0.5385 23 6 0.0486 3.2944 -2.5549 24 7 -1.1400 3.8484 -2.6672 25 14 1.2421 3.3449 -3.9910 26 1 1.0398 2.1472 -4.8452 27 1 1.0002 4.5713 -4.7927 28 1 2.6352 3.3565 -3.4767 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8499 1.0378 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4409 3.5484 -0.1309 37 1 5.6133 4.8818 -1.0062 38 1 5.4672 5.0880 0.7556 39 1 7.8345 3.6430 0.2215 40 1 9.6560 3.5096 0.3987 41 1 12.1069 3.5205 0.5905 42 1 12.1424 7.7636 0.0977 43 1 9.6925 7.7696 -0.1059 44 1 2.2720 2.1231 -1.9978 45 1 -1.3964 4.2827 -3.4959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495103829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:40 Heat of formation + Delta-G solvation = -83.111175 kcal Electronic energy + Delta-G solvation = -27854.347037 eV Core-core repulsion = 23593.517549 eV Total energy + Delta-G solvation = -4260.829489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.42343 -40.66822 -39.66424 -38.38800 -37.02460 -34.80770 -33.99729 -32.43226 -31.74631 -31.39273 -30.35451 -29.09361 -27.18950 -24.15880 -23.57264 -23.24492 -22.40612 -20.86754 -20.59089 -20.12723 -18.90336 -18.02579 -17.65015 -17.07655 -16.42381 -16.20048 -16.16588 -16.04893 -15.52985 -15.43494 -15.07251 -14.72312 -14.33437 -14.16923 -14.03733 -13.64719 -13.41517 -13.27948 -13.25681 -13.10048 -12.91577 -12.77864 -12.58793 -12.32065 -11.65193 -11.55120 -11.24008 -11.04164 -10.80016 -10.48304 -10.39432 -10.35847 -10.09252 -9.97846 -9.69871 -9.55407 -9.52035 -9.20868 -9.05492 -8.96980 -7.41945 -5.87240 -3.24163 0.20888 0.69995 2.36612 2.51725 2.59221 3.28367 3.30224 3.32869 3.36280 3.40338 3.66609 4.15882 4.30030 4.33219 4.49062 4.65487 4.68076 4.79471 5.09002 5.16321 5.18581 5.20130 5.31601 5.37821 5.38285 5.54461 5.63632 5.66955 5.75948 5.79949 5.82227 5.91038 6.00004 6.19176 6.26329 6.35102 6.43478 6.51186 6.63397 6.86095 7.16653 7.23438 7.52734 7.86475 7.87559 8.13758 8.30692 9.08059 9.80321 9.98953 11.30181 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.002117 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.555776 B =13221.539926 C =14259.409546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.112 3.888 6 N -0.707 5.707 7 C 0.507 3.493 8 O -0.553 6.553 9 C 0.097 3.903 10 N -0.711 5.711 11 C 0.561 3.439 12 O -0.533 6.533 13 C -0.144 4.144 14 C -0.055 4.055 15 C -0.161 4.161 16 C 0.123 3.877 17 F -0.135 7.135 18 C -0.162 4.162 19 C -0.029 4.029 20 N -0.747 5.747 21 C -0.245 4.245 22 H 0.095 0.905 23 C 0.008 3.992 24 N -0.929 5.929 25 Si 0.881 3.119 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.033 0.967 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.414 0.586 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.411 0.589 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.504 0.777 7.950 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.013 4.013 6 N -0.359 5.359 7 C 0.292 3.708 8 O -0.432 6.432 9 C -0.030 4.030 10 N -0.367 5.367 11 C 0.348 3.652 12 O -0.411 6.411 13 C -0.147 4.147 14 C -0.073 4.073 15 C -0.179 4.179 16 C 0.104 3.896 17 F -0.113 7.113 18 C -0.181 4.181 19 C -0.048 4.048 20 N -0.390 5.390 21 C -0.374 4.374 22 H 0.113 0.887 23 C -0.188 4.188 24 N -0.576 5.576 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.251 0.749 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.250 0.750 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.374 0.949 7.993 24.721 hybrid contribution 0.860 -0.110 -1.186 1.469 sum 24.234 0.839 6.807 25.186 Atomic orbital electron populations 1.21783 0.95137 0.99763 1.03828 1.22036 0.97432 0.97743 1.00112 1.20560 0.89630 0.93132 0.90899 0.91825 1.21788 0.95771 0.82076 1.01631 1.45931 1.06792 1.11383 1.71756 1.20389 0.83142 0.90490 0.76805 1.90658 1.55955 1.46084 1.50506 1.21128 0.81347 0.95180 1.05320 1.45580 1.06828 1.10361 1.73891 1.18089 0.86835 0.83479 0.76790 1.90819 1.70040 1.31340 1.48869 1.19964 0.93126 0.94576 1.07023 1.21272 0.93587 0.97762 0.94723 1.21114 0.94659 0.97621 1.04530 1.18003 0.77100 0.94796 0.99736 1.91534 1.29373 1.97383 1.93048 1.21167 0.94844 0.97614 1.04485 1.21170 0.92636 0.98250 0.92742 1.42831 1.16877 1.67679 1.11648 1.19035 0.90595 1.27884 0.99910 0.88722 1.24674 0.96369 1.00238 0.97555 1.69687 1.19289 1.41836 1.26791 0.86622 0.80962 0.77373 0.83856 1.21211 1.21790 1.20452 0.94830 0.89315 0.93848 0.93544 0.92651 0.91180 0.91642 0.74888 0.87822 0.87842 0.75019 0.84197 0.83868 0.83847 0.83363 0.80532 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.18 37.16 0.34 -2.19 16 2 C -0.13 -2.05 5.61 -26.73 -0.15 -2.20 16 3 C 0.17 2.73 2.59 -67.93 -0.18 2.56 16 4 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 5 C 0.11 1.59 5.23 -4.04 -0.02 1.57 16 6 N -0.71 -9.67 5.39 -60.29 -0.32 -9.99 16 7 C 0.51 6.71 7.90 -10.98 -0.09 6.62 16 8 O -0.55 -8.44 15.67 5.56 0.09 -8.35 16 9 C 0.10 1.11 6.15 -5.19 -0.03 1.08 16 10 N -0.71 -7.70 5.48 -62.47 -0.34 -8.04 16 11 C 0.56 6.54 7.77 -12.38 -0.10 6.45 16 12 O -0.53 -7.88 16.34 5.31 0.09 -7.80 16 13 C -0.14 -1.34 5.87 -104.97 -0.62 -1.95 16 14 C -0.05 -0.41 9.54 -39.20 -0.37 -0.78 16 15 C -0.16 -1.11 10.01 -39.57 -0.40 -1.51 16 16 C 0.12 0.95 7.31 -39.27 -0.29 0.67 16 17 F -0.13 -1.13 17.26 2.25 0.04 -1.09 16 18 C -0.16 -1.17 10.01 -39.57 -0.40 -1.56 16 19 C -0.03 -0.24 9.59 -39.20 -0.38 -0.62 16 20 N -0.75 -15.10 4.31 -53.42 -0.23 -15.33 16 21 C -0.24 -6.06 8.24 -15.06 -0.12 -6.18 16 22 H 0.10 2.54 7.55 -52.49 -0.40 2.14 16 23 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 24 N -0.93 -27.39 13.97 55.49 0.78 -26.61 16 25 Si 0.88 20.79 27.74 -169.99 -4.71 16.07 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.85 5.99 -51.93 -0.31 1.53 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.41 5.72 8.14 -40.82 -0.33 5.39 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.41 4.02 5.47 -40.82 -0.22 3.79 16 40 H 0.14 0.82 6.40 -52.48 -0.34 0.49 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.15 1.20 7.65 -52.49 -0.40 0.79 16 44 H 0.36 7.45 5.66 -40.82 -0.23 7.22 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -31.24 381.88 -7.80 -39.04 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -6.05 Total: 14.29 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.89 Total: 2.06 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.12 Total: -59.98 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.17 Total: -16.15 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.71 Total: 16.07 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.24 -7.80 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495103829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.072 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds