Wall clock time and date at job start Tue Mar 31 2020 21:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46667 * 2 1 4 4 C 1.53000 * 109.47235 * 240.00144 * 2 1 3 5 5 C 1.53003 * 109.46876 * 300.00125 * 4 2 1 6 6 C 1.53001 * 109.46856 * 300.00022 * 5 4 2 7 7 C 1.53000 * 109.47396 * 60.00296 * 6 5 4 8 8 C 1.53001 * 109.47078 * 119.99766 * 2 1 3 9 9 C 1.52997 * 109.47037 * 300.00241 * 8 2 1 10 10 N 1.46504 * 109.47090 * 185.46374 * 9 8 2 11 11 C 1.36937 * 120.00348 * 175.10381 * 10 9 8 12 12 H 1.08004 * 119.99510 * 359.97438 * 11 10 9 13 13 C 1.38804 * 120.00028 * 180.02562 * 11 10 9 14 14 N 1.31620 * 120.00266 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99840 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47173 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47191 * 119.99896 * 15 13 11 18 18 H 1.48503 * 109.47029 * 239.99773 * 15 13 11 19 19 N 1.46494 * 109.47023 * 180.02562 * 8 2 1 20 20 C 1.34771 * 120.00257 * 58.39741 * 19 8 2 21 21 O 1.21284 * 119.99958 * 5.06318 * 20 19 8 22 22 C 1.50699 * 119.99973 * 185.05713 * 20 19 8 23 23 C 1.50707 * 109.47251 * 179.97438 * 22 20 19 24 24 C 1.33638 * 122.75116 * 124.72653 * 23 22 20 25 25 S 1.76196 * 107.92757 * 179.97438 * 24 23 22 26 26 C 1.70981 * 90.27909 * 0.27996 * 25 24 23 27 27 N 1.29018 * 110.17029 * 359.83755 * 26 25 24 28 28 H 1.09002 * 109.47736 * 299.99819 * 1 2 3 29 29 H 1.09002 * 109.47517 * 59.99786 * 1 2 3 30 30 H 1.09000 * 109.47357 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47069 * 60.00122 * 4 2 1 32 32 H 1.09002 * 109.47154 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47327 * 60.00073 * 5 4 2 34 34 H 1.09002 * 109.46596 * 180.02562 * 5 4 2 35 35 H 1.09002 * 109.47044 * 300.00137 * 6 5 4 36 36 H 1.09000 * 109.47181 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.47267 * 180.02562 * 7 6 5 38 38 H 1.08992 * 109.47083 * 59.99768 * 7 6 5 39 39 H 1.08999 * 109.47373 * 305.46659 * 9 8 2 40 40 H 1.09001 * 109.47181 * 65.46915 * 9 8 2 41 41 H 0.97001 * 119.99553 * 355.10523 * 10 9 8 42 42 H 0.97000 * 120.00249 * 180.02562 * 14 13 11 43 43 H 0.97004 * 119.99643 * 238.40103 * 19 8 2 44 44 H 1.08997 * 109.47658 * 300.00065 * 22 20 19 45 45 H 1.08999 * 109.47494 * 60.00357 * 22 20 19 46 46 H 1.08006 * 126.03545 * 0.05034 * 24 23 22 47 47 H 1.08005 * 124.91505 * 179.83973 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5299 -2.1637 -1.2493 6 6 2.0399 -2.8849 0.0000 7 6 1.5299 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2493 9 6 1.5299 0.0001 2.4984 10 7 2.1227 -0.6104 3.6911 11 6 1.8906 -0.0663 4.9261 12 1 1.2709 0.8132 5.0208 13 6 2.4527 -0.6444 6.0559 14 7 3.2083 -1.7159 5.9403 15 14 2.1355 0.0975 7.7407 16 1 1.2602 1.2888 7.6002 17 1 1.4689 -0.9078 8.6068 18 1 3.4260 0.5017 8.3545 19 7 3.5049 -0.7207 1.2496 20 6 4.1784 0.4463 1.2172 21 8 3.5752 1.4965 1.2805 22 6 5.6810 0.4461 1.1024 23 6 6.1838 1.8667 1.0866 24 6 7.0970 2.3201 1.9506 25 16 7.3963 4.0170 1.5826 26 6 6.2577 3.9503 0.3088 27 7 5.7543 2.7654 0.2238 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 0.4400 -2.1637 -1.2493 34 1 1.8937 -2.6776 -2.1390 35 1 3.1300 -2.8849 0.0000 36 1 1.6770 -3.9127 -0.0002 37 1 1.8936 -2.6773 2.1393 38 1 0.4400 -2.1637 1.2492 39 1 1.8110 1.0521 2.4509 40 1 0.4443 -0.0840 2.5487 41 1 2.6795 -1.4000 3.6058 42 1 3.6008 -2.1201 6.7299 43 1 3.9902 -1.5603 1.2730 44 1 6.1104 -0.0822 1.9536 45 1 5.9749 -0.0532 0.1791 46 1 7.5691 1.7471 2.7350 47 1 5.9976 4.7800 -0.3319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495323255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:36 Heat of formation + Delta-G solvation = 14.546078 kcal Electronic energy + Delta-G solvation = -28708.224972 eV Core-core repulsion = 25017.843396 eV Total energy + Delta-G solvation = -3690.381576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59363 -39.67728 -37.60865 -34.63824 -33.16434 -32.26281 -31.77826 -31.01420 -29.45786 -28.11972 -26.24858 -25.00698 -24.70489 -22.89212 -21.89953 -21.15508 -20.17902 -19.39757 -18.07333 -17.92270 -17.07247 -16.68847 -15.83542 -15.56574 -15.28454 -14.75097 -14.32317 -14.29862 -14.02087 -13.77512 -13.38972 -13.19630 -13.16833 -12.92240 -12.89118 -12.60160 -12.37695 -12.28744 -12.05184 -11.69814 -11.44836 -11.38100 -11.25496 -10.99255 -10.88872 -10.77326 -10.68136 -10.17758 -10.04031 -9.96403 -9.75397 -9.57995 -9.54022 -9.37331 -9.08799 -8.78199 -8.63220 -8.30697 -6.77233 -5.69825 -2.94571 0.80753 1.46702 1.78281 2.87316 3.26535 3.46699 3.53099 3.55282 3.73571 4.25684 4.66051 4.86988 4.95445 4.98363 4.98834 5.19594 5.34076 5.35979 5.36418 5.41328 5.50440 5.58843 5.64165 5.66634 5.76047 5.78626 5.84356 5.88469 5.90625 6.08359 6.15724 6.18162 6.24181 6.26668 6.29128 6.40205 6.52925 6.62630 6.65634 6.71745 6.82392 7.05549 7.27935 7.79522 7.84111 8.09250 8.50641 8.85663 9.61937 10.21695 10.57540 11.53699 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007101 B = 0.005469 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3941.911107 B = 5118.214227 C = 8089.043789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.090 0.910 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.122 4.122 8 C 0.186 3.814 9 C 0.141 3.859 10 N -0.724 5.724 11 C -0.223 4.223 12 H 0.067 0.933 13 C -0.018 4.018 14 N -0.938 5.938 15 Si 0.902 3.098 16 H -0.282 1.282 17 H -0.293 1.293 18 H -0.294 1.294 19 N -0.712 5.712 20 C 0.527 3.473 21 O -0.515 6.515 22 C -0.070 4.070 23 C 0.090 3.910 24 C -0.247 4.247 25 S 0.098 5.902 26 C 0.021 3.979 27 N -0.440 5.440 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.381 0.619 42 H 0.251 0.749 43 H 0.394 0.606 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.178 0.822 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 2.713 -16.463 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.160 4.160 8 C 0.100 3.900 9 C 0.013 3.987 10 N -0.368 5.368 11 C -0.355 4.355 12 H 0.085 0.915 13 C -0.213 4.213 14 N -0.588 5.588 15 Si 0.734 3.266 16 H -0.207 1.207 17 H -0.220 1.220 18 H -0.221 1.221 19 N -0.363 5.363 20 C 0.312 3.688 21 O -0.390 6.390 22 C -0.113 4.113 23 C -0.043 4.043 24 C -0.386 4.386 25 S 0.350 5.650 26 C -0.278 4.278 27 N -0.152 5.152 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.215 0.785 42 H 0.061 0.939 43 H 0.228 0.772 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.195 0.805 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.802 4.310 -16.327 17.855 hybrid contribution 0.007 -1.105 1.189 1.623 sum 5.810 3.205 -15.138 16.528 Atomic orbital electron populations 1.21954 0.95206 1.01742 1.01600 1.21408 0.95663 1.01179 0.93575 0.89167 1.21472 1.00488 0.95171 0.97332 1.21575 1.00870 0.95879 0.97364 1.21538 1.00526 0.98690 0.94781 1.21819 1.01678 0.94318 0.98143 1.20452 0.79036 0.95340 0.95184 1.21154 0.95090 0.97126 0.85351 1.42224 1.59889 1.33549 1.01135 1.19285 1.23987 1.07894 0.84303 0.91486 1.24639 1.00778 0.98316 0.97544 1.69652 1.38171 1.22895 1.28088 0.86166 0.77245 0.78197 0.84989 1.20694 1.22029 1.22097 1.45831 1.06751 1.07982 1.75782 1.19900 0.88525 0.84111 0.76289 1.90659 1.69397 1.31279 1.47626 1.20260 0.94568 0.91563 1.04899 1.19637 0.95321 0.96289 0.93007 1.26821 1.07138 0.97685 1.06938 1.83894 1.41356 1.09111 1.30636 1.28323 0.99014 0.98751 1.01698 1.66013 1.23527 1.00531 1.25169 0.92101 0.93252 0.92357 0.92709 0.92280 0.91852 0.92773 0.92283 0.92188 0.90400 0.90461 0.93547 0.96390 0.78543 0.93879 0.77215 0.87306 0.87841 0.80484 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.15 37.16 0.30 -1.72 16 2 C -0.10 -1.48 2.01 -90.62 -0.18 -1.66 16 3 H 0.09 1.62 6.23 -51.93 -0.32 1.30 16 4 C -0.11 -1.34 5.29 -26.73 -0.14 -1.48 16 5 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 6 C -0.12 -1.37 5.75 -26.73 -0.15 -1.53 16 7 C -0.12 -1.80 4.38 -26.73 -0.12 -1.92 16 8 C 0.19 3.05 0.09 -131.82 -0.01 3.04 16 9 C 0.14 3.03 4.36 -4.04 -0.02 3.01 16 10 N -0.72 -18.40 5.18 -59.91 -0.31 -18.71 16 11 C -0.22 -6.43 9.99 -15.06 -0.15 -6.58 16 12 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 13 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 14 N -0.94 -28.19 13.06 55.49 0.72 -27.47 16 15 Si 0.90 23.08 29.55 -169.99 -5.02 18.06 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 19 N -0.71 -11.13 3.51 -47.61 -0.17 -11.30 16 20 C 0.53 9.08 7.20 -10.99 -0.08 9.01 16 21 O -0.51 -10.84 11.74 5.55 0.07 -10.77 16 22 C -0.07 -0.96 6.20 -29.03 -0.18 -1.14 16 23 C 0.09 1.34 5.64 -84.22 -0.47 0.86 16 24 C -0.25 -3.25 11.07 29.12 0.32 -2.93 16 25 S 0.10 1.10 23.22 -107.50 -2.50 -1.40 16 26 C 0.02 0.26 12.23 51.58 0.63 0.89 16 27 N -0.44 -6.83 9.68 -11.89 -0.12 -6.95 16 28 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.77 7.61 -51.93 -0.39 0.37 16 33 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 6.90 -51.93 -0.36 0.29 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.33 7.11 -51.93 -0.37 0.96 16 38 H 0.08 1.14 6.43 -51.93 -0.33 0.81 16 39 H 0.05 1.14 6.29 -51.93 -0.33 0.81 16 40 H 0.02 0.40 6.73 -51.93 -0.35 0.05 16 41 H 0.38 9.85 6.47 -40.82 -0.26 9.58 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.39 5.32 7.38 -40.82 -0.30 5.02 16 44 H 0.11 1.35 8.03 -51.93 -0.42 0.93 16 45 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.18 2.00 8.06 -52.48 -0.42 1.58 16 47 H 0.20 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -34.57 370.69 -9.10 -43.67 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -6.87 Total: 13.50 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.50 Total: -4.22 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: 0.13 Total: -64.42 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.50 Total: -1.40 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.57 -9.10 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495323255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.219 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds