Wall clock time and date at job start Tue Mar 31 2020 21:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46667 * 2 1 4 4 C 1.53000 * 109.47235 * 240.00144 * 2 1 3 5 5 C 1.53003 * 109.46876 * 300.00125 * 4 2 1 6 6 C 1.53001 * 109.46856 * 300.00022 * 5 4 2 7 7 C 1.53000 * 109.47396 * 60.00296 * 6 5 4 8 8 C 1.53001 * 109.47078 * 119.99766 * 2 1 3 9 9 C 1.52997 * 109.47037 * 300.00241 * 8 2 1 10 10 N 1.46504 * 109.47090 * 185.46374 * 9 8 2 11 11 C 1.36937 * 120.00348 * 175.10381 * 10 9 8 12 12 H 1.08004 * 119.99510 * 359.97438 * 11 10 9 13 13 C 1.38804 * 120.00028 * 180.02562 * 11 10 9 14 14 N 1.31620 * 120.00266 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99840 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47173 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47191 * 119.99896 * 15 13 11 18 18 H 1.48503 * 109.47029 * 239.99773 * 15 13 11 19 19 N 1.46494 * 109.47023 * 180.02562 * 8 2 1 20 20 C 1.34771 * 120.00257 * 58.39741 * 19 8 2 21 21 O 1.21284 * 119.99958 * 5.06318 * 20 19 8 22 22 C 1.50699 * 119.99973 * 185.05713 * 20 19 8 23 23 C 1.50707 * 109.47251 * 179.97438 * 22 20 19 24 24 C 1.33638 * 122.75116 * 124.72653 * 23 22 20 25 25 S 1.76196 * 107.92757 * 179.97438 * 24 23 22 26 26 C 1.70981 * 90.27909 * 0.27996 * 25 24 23 27 27 N 1.29018 * 110.17029 * 359.83755 * 26 25 24 28 28 H 1.09002 * 109.47736 * 299.99819 * 1 2 3 29 29 H 1.09002 * 109.47517 * 59.99786 * 1 2 3 30 30 H 1.09000 * 109.47357 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47069 * 60.00122 * 4 2 1 32 32 H 1.09002 * 109.47154 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47327 * 60.00073 * 5 4 2 34 34 H 1.09002 * 109.46596 * 180.02562 * 5 4 2 35 35 H 1.09002 * 109.47044 * 300.00137 * 6 5 4 36 36 H 1.09000 * 109.47181 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.47267 * 180.02562 * 7 6 5 38 38 H 1.08992 * 109.47083 * 59.99768 * 7 6 5 39 39 H 1.08999 * 109.47373 * 305.46659 * 9 8 2 40 40 H 1.09001 * 109.47181 * 65.46915 * 9 8 2 41 41 H 0.97001 * 119.99553 * 355.10523 * 10 9 8 42 42 H 0.97000 * 120.00249 * 180.02562 * 14 13 11 43 43 H 0.97004 * 119.99643 * 238.40103 * 19 8 2 44 44 H 1.08997 * 109.47658 * 300.00065 * 22 20 19 45 45 H 1.08999 * 109.47494 * 60.00357 * 22 20 19 46 46 H 1.08006 * 126.03545 * 0.05034 * 24 23 22 47 47 H 1.08005 * 124.91505 * 179.83973 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5299 -2.1637 -1.2493 6 6 2.0399 -2.8849 0.0000 7 6 1.5299 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2493 9 6 1.5299 0.0001 2.4984 10 7 2.1227 -0.6104 3.6911 11 6 1.8906 -0.0663 4.9261 12 1 1.2709 0.8132 5.0208 13 6 2.4527 -0.6444 6.0559 14 7 3.2083 -1.7159 5.9403 15 14 2.1355 0.0975 7.7407 16 1 1.2602 1.2888 7.6002 17 1 1.4689 -0.9078 8.6068 18 1 3.4260 0.5017 8.3545 19 7 3.5049 -0.7207 1.2496 20 6 4.1784 0.4463 1.2172 21 8 3.5752 1.4965 1.2805 22 6 5.6810 0.4461 1.1024 23 6 6.1838 1.8667 1.0866 24 6 7.0970 2.3201 1.9506 25 16 7.3963 4.0170 1.5826 26 6 6.2577 3.9503 0.3088 27 7 5.7543 2.7654 0.2238 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 0.4400 -2.1637 -1.2493 34 1 1.8937 -2.6776 -2.1390 35 1 3.1300 -2.8849 0.0000 36 1 1.6770 -3.9127 -0.0002 37 1 1.8936 -2.6773 2.1393 38 1 0.4400 -2.1637 1.2492 39 1 1.8110 1.0521 2.4509 40 1 0.4443 -0.0840 2.5487 41 1 2.6795 -1.4000 3.6058 42 1 3.6008 -2.1201 6.7299 43 1 3.9902 -1.5603 1.2730 44 1 6.1104 -0.0822 1.9536 45 1 5.9749 -0.0532 0.1791 46 1 7.5691 1.7471 2.7350 47 1 5.9976 4.7800 -0.3319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495323255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:35 Heat of formation + Delta-G solvation = -8.474799 kcal Electronic energy + Delta-G solvation = -28709.223233 eV Core-core repulsion = 25017.843396 eV Total energy + Delta-G solvation = -3691.379836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.86637 -40.73545 -38.87802 -36.45140 -34.67743 -33.60555 -32.87457 -32.65352 -30.96091 -29.18264 -27.67992 -26.52584 -25.72470 -24.70830 -23.04068 -22.48104 -21.47438 -20.44343 -19.45952 -19.11701 -18.89137 -17.89239 -17.05278 -16.74414 -16.71366 -16.23374 -15.93117 -15.51400 -15.29879 -15.08132 -14.83702 -14.56747 -14.51831 -14.11555 -14.04811 -13.94540 -13.76732 -13.56290 -13.26818 -13.03229 -12.86666 -12.82514 -12.63434 -12.45090 -12.34694 -12.17882 -12.07880 -11.93974 -11.81973 -11.19620 -11.11040 -11.01545 -10.88067 -10.53877 -10.41128 -10.24572 -9.71474 -9.68380 -8.91376 -7.95252 -5.20080 -0.16837 0.54052 0.81511 1.42387 1.42806 1.52847 1.80631 1.95309 2.48945 2.55715 3.30458 3.37640 3.66742 3.85211 3.87391 3.98045 4.11832 4.13654 4.27010 4.31577 4.39059 4.43307 4.48953 4.51220 4.59197 4.60369 4.72731 4.76468 4.82289 4.88280 4.93354 4.99432 5.15681 5.17243 5.19798 5.21005 5.28395 5.30842 5.42602 5.47372 5.48021 5.55544 5.64408 5.88008 6.28396 6.80806 6.87496 7.35468 7.55898 8.11120 8.40814 9.27829 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007101 B = 0.005469 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3941.911107 B = 5118.214227 C = 8089.043789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.055 0.945 4 C -0.100 4.100 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.115 4.115 8 C 0.193 3.807 9 C 0.146 3.854 10 N -0.726 5.726 11 C -0.239 4.239 12 H 0.056 0.944 13 C -0.066 4.066 14 N -0.961 5.961 15 Si 0.963 3.037 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.292 1.292 19 N -0.705 5.705 20 C 0.518 3.482 21 O -0.558 6.558 22 C -0.066 4.066 23 C 0.064 3.936 24 C -0.265 4.265 25 S 0.149 5.851 26 C 0.012 3.988 27 N -0.479 5.479 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.012 0.988 40 H 0.014 0.986 41 H 0.378 0.622 42 H 0.251 0.749 43 H 0.405 0.595 44 H 0.120 0.880 45 H 0.132 0.868 46 H 0.191 0.809 47 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.650 2.013 -17.623 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.074 0.926 4 C -0.138 4.138 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.153 4.153 8 C 0.107 3.893 9 C 0.018 3.982 10 N -0.369 5.369 11 C -0.371 4.371 12 H 0.074 0.926 13 C -0.259 4.259 14 N -0.612 5.612 15 Si 0.793 3.207 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.219 1.219 19 N -0.357 5.357 20 C 0.305 3.695 21 O -0.436 6.436 22 C -0.108 4.108 23 C -0.068 4.068 24 C -0.404 4.404 25 S 0.401 5.599 26 C -0.287 4.287 27 N -0.193 5.193 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.031 0.969 41 H 0.211 0.789 42 H 0.060 0.940 43 H 0.241 0.759 44 H 0.138 0.862 45 H 0.150 0.850 46 H 0.208 0.792 47 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.373 3.599 -17.507 18.975 hybrid contribution -0.170 -0.775 1.575 1.763 sum 6.203 2.824 -15.932 17.329 Atomic orbital electron populations 1.21934 0.94275 1.02635 1.01369 1.21298 0.96411 0.99388 0.94142 0.92608 1.21422 1.00227 0.96197 0.95952 1.21552 1.01234 0.94468 0.97790 1.21520 1.01066 0.99147 0.93151 1.21745 1.01612 0.92905 0.99072 1.20311 0.79617 0.96096 0.93292 1.21152 0.94636 0.95737 0.86630 1.42258 1.59876 1.33374 1.01364 1.19507 1.23910 1.07728 0.85993 0.92571 1.25332 1.00933 0.98939 1.00680 1.69769 1.38820 1.23763 1.28840 0.85223 0.77042 0.77590 0.80836 1.20258 1.21460 1.21884 1.45801 1.06485 1.08349 1.75047 1.20581 0.90058 0.83648 0.75233 1.90642 1.70602 1.32808 1.49553 1.20302 0.91697 0.92005 1.06774 1.19858 0.96268 0.96833 0.93838 1.27145 1.07021 0.99321 1.06920 1.83650 1.39860 1.07158 1.29195 1.28867 0.98768 0.98718 1.02309 1.66029 1.24982 1.01739 1.26514 0.94369 0.91493 0.90809 0.91668 0.92670 0.91248 0.90395 0.91442 0.90433 0.92856 0.90473 0.96978 0.96873 0.78882 0.93984 0.75861 0.86180 0.85031 0.79184 0.76054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.15 71.98 0.59 -3.33 16 2 C -0.09 -2.79 2.01 -10.79 -0.02 -2.81 16 3 H 0.06 2.10 6.23 -2.39 -0.01 2.08 16 4 C -0.10 -2.33 5.29 30.60 0.16 -2.17 16 5 C -0.11 -2.12 5.65 30.60 0.17 -1.95 16 6 C -0.11 -2.31 5.75 30.59 0.18 -2.13 16 7 C -0.12 -3.34 4.38 30.60 0.13 -3.21 16 8 C 0.19 6.46 0.09 3.60 0.00 6.46 16 9 C 0.15 6.59 4.36 86.38 0.38 6.97 16 10 N -0.73 -38.11 5.18 -343.45 -1.78 -39.89 16 11 C -0.24 -14.14 9.99 84.03 0.84 -13.30 16 12 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 13 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 14 N -0.96 -58.15 13.06 21.65 0.28 -57.86 16 15 Si 0.96 47.82 29.55 68.60 2.03 49.85 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 19 N -0.70 -22.26 3.51 -422.94 -1.48 -23.74 16 20 C 0.52 18.29 7.20 87.66 0.63 18.93 16 21 O -0.56 -24.65 11.74 -3.04 -0.04 -24.68 16 22 C -0.07 -1.79 6.20 29.10 0.18 -1.61 16 23 C 0.06 1.92 5.64 41.52 0.23 2.15 16 24 C -0.26 -6.85 11.07 66.78 0.74 -6.11 16 25 S 0.15 3.15 23.22 -56.49 -1.31 1.84 16 26 C 0.01 0.28 12.23 130.66 1.60 1.88 16 27 N -0.48 -14.96 9.68 -191.54 -1.85 -16.81 16 28 H 0.04 1.18 6.56 -2.39 -0.02 1.17 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.76 4.81 -2.39 -0.01 1.74 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.33 7.61 -2.39 -0.02 1.32 16 33 H 0.07 1.26 6.43 -2.39 -0.02 1.24 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.30 6.90 -2.39 -0.02 1.29 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.81 7.11 -2.39 -0.02 1.80 16 38 H 0.08 2.21 6.43 -2.39 -0.02 2.20 16 39 H 0.01 0.64 6.29 -2.39 -0.02 0.62 16 40 H 0.01 0.62 6.73 -2.39 -0.02 0.60 16 41 H 0.38 20.07 6.47 -92.71 -0.60 19.47 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.41 10.75 7.38 -92.71 -0.68 10.06 16 44 H 0.12 2.93 8.03 -2.39 -0.02 2.91 16 45 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 47 H 0.22 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -76.75 370.69 1.85 -74.90 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -0.27 Total: 40.06 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 6.27 Total: -3.65 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -4.83 Total: -138.31 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.04 Total: -24.68 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.31 Total: 1.84 kcal Total: -76.75 1.85 -74.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495323255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.425 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds