Wall clock time and date at job start Tue Mar 31 2020 21:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47221 * 2 1 4 4 C 1.52996 * 109.47552 * 239.99630 * 2 1 3 5 5 C 1.52998 * 109.47208 * 179.97438 * 4 2 1 6 6 C 1.53009 * 109.46990 * 60.00093 * 5 4 2 7 7 C 1.52996 * 109.47069 * 299.99992 * 6 5 4 8 8 C 1.52999 * 109.46819 * 119.99532 * 2 1 3 9 9 C 1.53003 * 109.47343 * 299.99755 * 8 2 1 10 10 N 1.46503 * 109.47070 * 174.13761 * 9 8 2 11 11 C 1.36943 * 119.99633 * 183.55409 * 10 9 8 12 12 H 1.07999 * 119.99793 * 0.02562 * 11 10 9 13 13 C 1.38813 * 119.99550 * 180.02562 * 11 10 9 14 14 N 1.31616 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99679 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46917 * 60.00146 * 15 13 11 17 17 H 1.48502 * 109.46987 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47206 * 300.00435 * 15 13 11 19 19 N 1.46498 * 109.47279 * 60.00362 * 8 2 1 20 20 C 1.34772 * 119.99842 * 291.16174 * 19 8 2 21 21 O 1.21285 * 119.99914 * 354.00371 * 20 19 8 22 22 C 1.50700 * 120.00179 * 173.99972 * 20 19 8 23 23 C 1.50701 * 109.47375 * 179.97438 * 22 20 19 24 24 C 1.33645 * 122.74596 * 124.99962 * 23 22 20 25 25 S 1.76199 * 107.92079 * 180.02562 * 24 23 22 26 26 C 1.70978 * 90.28472 * 0.02562 * 25 24 23 27 27 N 1.29027 * 110.16351 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47351 * 291.99619 * 1 2 3 29 29 H 1.09001 * 109.46619 * 51.99755 * 1 2 3 30 30 H 1.09001 * 109.46859 * 171.99204 * 1 2 3 31 31 H 1.09002 * 109.46664 * 299.99888 * 4 2 1 32 32 H 1.08996 * 109.47151 * 59.99843 * 4 2 1 33 33 H 1.09002 * 109.47408 * 179.97438 * 5 4 2 34 34 H 1.08993 * 109.47409 * 300.00230 * 5 4 2 35 35 H 1.09000 * 109.46754 * 60.00201 * 6 5 4 36 36 H 1.09000 * 109.47129 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.46664 * 300.00107 * 7 6 5 38 38 H 1.08996 * 109.47151 * 180.02562 * 7 6 5 39 39 H 1.08996 * 109.47244 * 294.14584 * 9 8 2 40 40 H 1.09002 * 109.46382 * 54.14029 * 9 8 2 41 41 H 0.96991 * 120.00284 * 3.55620 * 10 9 8 42 42 H 0.96996 * 119.99928 * 179.97438 * 14 13 11 43 43 H 0.97001 * 119.99836 * 111.16070 * 19 8 2 44 44 H 1.09005 * 109.46921 * 59.99724 * 22 20 19 45 45 H 1.09001 * 109.47081 * 300.00341 * 22 20 19 46 46 H 1.08000 * 126.03711 * 359.73725 * 24 23 22 47 47 H 1.07997 * 124.91507 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0805 -1.4415 0.0000 7 6 3.5704 -0.7202 1.2491 8 6 2.0399 -0.7212 1.2493 9 6 1.5299 0.0002 2.4985 10 7 1.8996 -0.7670 3.6906 11 6 1.4851 -0.3516 4.9279 12 1 0.8853 0.5412 5.0248 13 6 1.8358 -1.0783 6.0574 14 7 2.5672 -2.1661 5.9393 15 14 1.2709 -0.5113 7.7453 16 1 -0.2132 -0.4795 7.7857 17 1 1.7736 -1.4530 8.7777 18 1 1.8027 0.8488 8.0142 19 7 1.5516 -2.1024 1.2494 20 6 0.2397 -2.3533 1.4287 21 8 -0.5198 -1.4468 1.6979 22 6 -0.2837 -3.7601 1.2945 23 6 -1.7703 -3.7688 1.5417 24 6 -2.6460 -4.2686 0.6645 25 16 -4.2611 -4.0789 1.3429 26 6 -3.5983 -3.3458 2.7381 27 7 -2.3133 -3.2833 2.6398 28 1 -0.3634 0.3849 0.9528 29 1 -0.3632 0.6328 -0.8098 30 1 -0.3633 -1.0177 -0.1432 31 1 1.6768 -1.7490 -1.2490 32 1 1.6768 -0.2076 -2.1391 33 1 3.9335 -1.2350 -2.1391 34 1 3.9330 0.3070 -1.2496 35 1 3.7176 -2.4693 0.0002 36 1 5.1705 -1.4415 -0.0004 37 1 3.9334 0.3076 1.2488 38 1 3.9345 -1.2335 2.1391 39 1 1.9764 0.9931 2.5524 40 1 0.4450 0.0920 2.4475 41 1 2.4380 -1.5690 3.6035 42 1 2.8126 -2.6736 6.7286 43 1 2.1726 -2.8363 1.1204 44 1 0.2094 -4.4023 2.0243 45 1 -0.0799 -4.1292 0.2894 46 1 -2.4065 -4.7067 -0.2931 47 1 -4.1721 -2.9876 3.5800 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495323256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:38 Heat of formation + Delta-G solvation = 35.180676 kcal Electronic energy + Delta-G solvation = -29055.021140 eV Core-core repulsion = 25365.534347 eV Total energy + Delta-G solvation = -3689.486793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73650 -39.59587 -37.41089 -34.49908 -33.08534 -32.57950 -31.86873 -30.96176 -29.36069 -27.87439 -26.25762 -24.90156 -24.71458 -22.86000 -21.18295 -21.11415 -20.35028 -19.35156 -18.65450 -17.99889 -17.03938 -16.69859 -15.97865 -15.36885 -15.10928 -14.69811 -14.25311 -14.17318 -13.86885 -13.74100 -13.50429 -13.40836 -13.16987 -12.95598 -12.79579 -12.59006 -12.34492 -12.11015 -11.75346 -11.63316 -11.34979 -11.26982 -11.21634 -10.96807 -10.75756 -10.68872 -10.64465 -10.28140 -10.04155 -9.89003 -9.56261 -9.47685 -9.37590 -9.34416 -9.02173 -8.73391 -8.48313 -8.12553 -6.64288 -5.58984 -2.82603 0.83761 1.50028 1.81256 2.97499 3.30804 3.55285 3.58571 3.60903 3.78763 4.35045 4.74698 4.89397 4.92663 4.94761 4.99896 5.19513 5.27995 5.32025 5.32423 5.38459 5.56962 5.65240 5.67227 5.71125 5.77077 5.78569 5.83016 5.86748 6.06290 6.12143 6.17789 6.21802 6.30324 6.33763 6.36554 6.44509 6.48467 6.60748 6.76352 6.78158 6.89625 7.23052 7.39139 7.88111 7.97286 8.14467 8.61366 8.93846 9.72586 10.32779 10.68224 11.64755 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007264 B = 0.005898 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.803898 B = 4746.577203 C = 7741.060502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.120 4.120 8 C 0.184 3.816 9 C 0.134 3.866 10 N -0.720 5.720 11 C -0.218 4.218 12 H 0.065 0.935 13 C -0.018 4.018 14 N -0.939 5.939 15 Si 0.902 3.098 16 H -0.288 1.288 17 H -0.293 1.293 18 H -0.289 1.289 19 N -0.713 5.713 20 C 0.520 3.480 21 O -0.493 6.493 22 C -0.072 4.072 23 C 0.098 3.902 24 C -0.260 4.260 25 S 0.083 5.917 26 C 0.033 3.967 27 N -0.427 5.427 28 H 0.082 0.918 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.009 0.991 40 H 0.066 0.934 41 H 0.380 0.620 42 H 0.251 0.749 43 H 0.392 0.608 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.174 0.826 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 -4.864 -17.977 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.158 4.158 8 C 0.098 3.902 9 C 0.006 3.994 10 N -0.364 5.364 11 C -0.349 4.349 12 H 0.083 0.917 13 C -0.212 4.212 14 N -0.590 5.590 15 Si 0.734 3.266 16 H -0.215 1.215 17 H -0.219 1.219 18 H -0.216 1.216 19 N -0.366 5.366 20 C 0.305 3.695 21 O -0.367 6.367 22 C -0.114 4.114 23 C -0.035 4.035 24 C -0.399 4.399 25 S 0.335 5.665 26 C -0.267 4.267 27 N -0.139 5.139 28 H 0.101 0.899 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.027 0.973 40 H 0.084 0.916 41 H 0.214 0.786 42 H 0.061 0.939 43 H 0.226 0.774 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.191 0.809 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.796 -4.084 -17.516 19.227 hybrid contribution 1.099 -0.350 0.865 1.442 sum -5.696 -4.434 -16.651 18.148 Atomic orbital electron populations 1.22381 0.93959 1.01697 1.01727 1.21481 0.96795 0.98967 0.93951 0.91119 1.21538 0.95035 1.00697 0.97360 1.21544 0.95963 1.00572 0.97494 1.21554 1.00052 0.99249 0.94774 1.21794 0.93956 1.01856 0.98186 1.20525 0.92903 0.81619 0.95202 1.21311 1.00135 0.92810 0.85139 1.42135 1.63133 1.30218 1.00872 1.19148 1.25162 1.06459 0.84167 0.91735 1.24606 1.01392 0.97821 0.97427 1.69628 1.42926 1.18273 1.28129 0.86319 0.78219 0.77328 0.84699 1.21522 1.21949 1.21612 1.45762 1.07808 1.08108 1.74926 1.19729 0.82512 0.89702 0.77570 1.90719 1.57209 1.44975 1.43802 1.20279 0.89741 0.97611 1.03808 1.19698 0.96574 0.97743 0.89517 1.26702 0.94456 1.12732 1.06014 1.83843 1.10408 1.56532 1.15747 1.28482 0.93164 1.02974 1.02053 1.66084 1.09632 1.15335 1.22823 0.89894 0.95714 0.92313 0.92144 0.92717 0.92611 0.92201 0.92276 0.92106 0.90886 0.90197 0.97331 0.91604 0.78599 0.93933 0.77436 0.87288 0.88200 0.80886 0.78662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.29 37.16 0.27 -1.95 16 2 C -0.09 -1.31 2.07 -90.62 -0.19 -1.50 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.11 -1.25 5.04 -26.73 -0.13 -1.39 16 5 C -0.12 -1.24 5.92 -26.73 -0.16 -1.39 16 6 C -0.12 -1.35 5.75 -26.73 -0.15 -1.50 16 7 C -0.12 -1.77 4.70 -26.71 -0.13 -1.90 16 8 C 0.18 2.97 0.32 -131.79 -0.04 2.93 16 9 C 0.13 2.89 4.44 -4.04 -0.02 2.87 16 10 N -0.72 -18.65 5.17 -59.90 -0.31 -18.96 16 11 C -0.22 -6.42 9.99 -15.06 -0.15 -6.57 16 12 H 0.06 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 14 N -0.94 -29.08 13.06 55.49 0.72 -28.36 16 15 Si 0.90 23.73 29.55 -169.99 -5.02 18.71 16 16 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 17 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 19 N -0.71 -10.85 3.58 -47.58 -0.17 -11.02 16 20 C 0.52 8.77 5.85 -10.99 -0.06 8.71 16 21 O -0.49 -10.01 8.91 5.55 0.05 -9.96 16 22 C -0.07 -0.98 6.20 -29.03 -0.18 -1.16 16 23 C 0.10 1.47 5.64 -84.23 -0.47 0.99 16 24 C -0.26 -3.09 11.07 29.12 0.32 -2.76 16 25 S 0.08 0.91 23.22 -107.50 -2.50 -1.59 16 26 C 0.03 0.46 12.23 51.58 0.63 1.09 16 27 N -0.43 -7.57 9.68 -11.90 -0.12 -7.68 16 28 H 0.08 1.57 5.04 -51.93 -0.26 1.31 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.95 5.32 -51.93 -0.28 0.68 16 31 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.62 6.70 -51.93 -0.35 0.28 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.38 7.17 -51.93 -0.37 1.01 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 1.57 4.25 -51.93 -0.22 1.35 16 41 H 0.38 10.12 6.50 -40.82 -0.27 9.86 16 42 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.39 5.09 7.08 -40.82 -0.29 4.80 16 44 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 45 H 0.10 0.95 8.03 -51.93 -0.42 0.54 16 46 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.20 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -35.15 369.71 -9.37 -44.53 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.04 Total: 12.92 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.56 Total: -4.16 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: 0.13 Total: -66.02 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.05 Total: -9.96 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.02 Total: 18.71 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.15 -9.37 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495323256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.706 kcal (2) G-P(sol) polarization free energy of solvation -35.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds