Wall clock time and date at job start Tue Mar 31 2020 21:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47221 * 2 1 4 4 C 1.52996 * 109.47552 * 239.99630 * 2 1 3 5 5 C 1.52998 * 109.47208 * 179.97438 * 4 2 1 6 6 C 1.53009 * 109.46990 * 60.00093 * 5 4 2 7 7 C 1.52996 * 109.47069 * 299.99992 * 6 5 4 8 8 C 1.52999 * 109.46819 * 119.99532 * 2 1 3 9 9 C 1.53003 * 109.47343 * 299.99755 * 8 2 1 10 10 N 1.46503 * 109.47070 * 174.13761 * 9 8 2 11 11 C 1.36943 * 119.99633 * 183.55409 * 10 9 8 12 12 H 1.07999 * 119.99793 * 0.02562 * 11 10 9 13 13 C 1.38813 * 119.99550 * 180.02562 * 11 10 9 14 14 N 1.31616 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99679 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46917 * 60.00146 * 15 13 11 17 17 H 1.48502 * 109.46987 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47206 * 300.00435 * 15 13 11 19 19 N 1.46498 * 109.47279 * 60.00362 * 8 2 1 20 20 C 1.34772 * 119.99842 * 291.16174 * 19 8 2 21 21 O 1.21285 * 119.99914 * 354.00371 * 20 19 8 22 22 C 1.50700 * 120.00179 * 173.99972 * 20 19 8 23 23 C 1.50701 * 109.47375 * 179.97438 * 22 20 19 24 24 C 1.33645 * 122.74596 * 124.99962 * 23 22 20 25 25 S 1.76199 * 107.92079 * 180.02562 * 24 23 22 26 26 C 1.70978 * 90.28472 * 0.02562 * 25 24 23 27 27 N 1.29027 * 110.16351 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47351 * 291.99619 * 1 2 3 29 29 H 1.09001 * 109.46619 * 51.99755 * 1 2 3 30 30 H 1.09001 * 109.46859 * 171.99204 * 1 2 3 31 31 H 1.09002 * 109.46664 * 299.99888 * 4 2 1 32 32 H 1.08996 * 109.47151 * 59.99843 * 4 2 1 33 33 H 1.09002 * 109.47408 * 179.97438 * 5 4 2 34 34 H 1.08993 * 109.47409 * 300.00230 * 5 4 2 35 35 H 1.09000 * 109.46754 * 60.00201 * 6 5 4 36 36 H 1.09000 * 109.47129 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.46664 * 300.00107 * 7 6 5 38 38 H 1.08996 * 109.47151 * 180.02562 * 7 6 5 39 39 H 1.08996 * 109.47244 * 294.14584 * 9 8 2 40 40 H 1.09002 * 109.46382 * 54.14029 * 9 8 2 41 41 H 0.96991 * 120.00284 * 3.55620 * 10 9 8 42 42 H 0.96996 * 119.99928 * 179.97438 * 14 13 11 43 43 H 0.97001 * 119.99836 * 111.16070 * 19 8 2 44 44 H 1.09005 * 109.46921 * 59.99724 * 22 20 19 45 45 H 1.09001 * 109.47081 * 300.00341 * 22 20 19 46 46 H 1.08000 * 126.03711 * 359.73725 * 24 23 22 47 47 H 1.07997 * 124.91507 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0805 -1.4415 0.0000 7 6 3.5704 -0.7202 1.2491 8 6 2.0399 -0.7212 1.2493 9 6 1.5299 0.0002 2.4985 10 7 1.8996 -0.7670 3.6906 11 6 1.4851 -0.3516 4.9279 12 1 0.8853 0.5412 5.0248 13 6 1.8358 -1.0783 6.0574 14 7 2.5672 -2.1661 5.9393 15 14 1.2709 -0.5113 7.7453 16 1 -0.2132 -0.4795 7.7857 17 1 1.7736 -1.4530 8.7777 18 1 1.8027 0.8488 8.0142 19 7 1.5516 -2.1024 1.2494 20 6 0.2397 -2.3533 1.4287 21 8 -0.5198 -1.4468 1.6979 22 6 -0.2837 -3.7601 1.2945 23 6 -1.7703 -3.7688 1.5417 24 6 -2.6460 -4.2686 0.6645 25 16 -4.2611 -4.0789 1.3429 26 6 -3.5983 -3.3458 2.7381 27 7 -2.3133 -3.2833 2.6398 28 1 -0.3634 0.3849 0.9528 29 1 -0.3632 0.6328 -0.8098 30 1 -0.3633 -1.0177 -0.1432 31 1 1.6768 -1.7490 -1.2490 32 1 1.6768 -0.2076 -2.1391 33 1 3.9335 -1.2350 -2.1391 34 1 3.9330 0.3070 -1.2496 35 1 3.7176 -2.4693 0.0002 36 1 5.1705 -1.4415 -0.0004 37 1 3.9334 0.3076 1.2488 38 1 3.9345 -1.2335 2.1391 39 1 1.9764 0.9931 2.5524 40 1 0.4450 0.0920 2.4475 41 1 2.4380 -1.5690 3.6035 42 1 2.8126 -2.6736 6.7286 43 1 2.1726 -2.8363 1.1204 44 1 0.2094 -4.4023 2.0243 45 1 -0.0799 -4.1292 0.2894 46 1 -2.4065 -4.7067 -0.2931 47 1 -4.1721 -2.9876 3.5800 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495323256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:38 Heat of formation + Delta-G solvation = 11.193925 kcal Electronic energy + Delta-G solvation = -29056.061284 eV Core-core repulsion = 25365.534347 eV Total energy + Delta-G solvation = -3690.526937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.99414 -40.66212 -38.62680 -36.34146 -34.51974 -33.82103 -33.12970 -32.60059 -30.86484 -28.90341 -27.69469 -26.47506 -25.75409 -24.69743 -22.48333 -22.32950 -21.48681 -20.38067 -19.95443 -19.19071 -18.97431 -17.91725 -17.20141 -16.75985 -16.46430 -16.10556 -15.76835 -15.39966 -15.22579 -14.90345 -14.82771 -14.72034 -14.64509 -14.12087 -14.08807 -13.83391 -13.62596 -13.52957 -13.11454 -12.91061 -12.79867 -12.67070 -12.62080 -12.45345 -12.24582 -12.18475 -12.05660 -11.81946 -11.75820 -11.29707 -11.01369 -10.94099 -10.71876 -10.40767 -10.35138 -10.14299 -9.67288 -9.45749 -8.82342 -7.91563 -5.14443 -0.13314 0.59423 0.83839 1.40523 1.44708 1.50062 1.89664 2.03914 2.54592 2.61098 3.39639 3.41648 3.74523 3.81962 3.88922 4.01583 4.15496 4.19538 4.23913 4.33123 4.41864 4.46600 4.56122 4.57902 4.59734 4.65540 4.74483 4.81690 4.83152 4.95659 4.97247 5.05007 5.17502 5.22382 5.25240 5.28248 5.32225 5.40184 5.43339 5.46998 5.53029 5.60907 5.77794 5.94121 6.32040 6.90662 7.00759 7.38803 7.69125 8.17548 8.44860 9.31640 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007264 B = 0.005898 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.803898 B = 4746.577203 C = 7741.060502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.101 4.101 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.115 4.115 8 C 0.192 3.808 9 C 0.134 3.866 10 N -0.722 5.722 11 C -0.231 4.231 12 H 0.055 0.945 13 C -0.071 4.071 14 N -0.964 5.964 15 Si 0.963 3.037 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.279 1.279 19 N -0.706 5.706 20 C 0.509 3.491 21 O -0.532 6.532 22 C -0.066 4.066 23 C 0.061 3.939 24 C -0.248 4.248 25 S 0.156 5.844 26 C 0.001 3.999 27 N -0.491 5.491 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.049 0.951 39 H -0.003 1.003 40 H 0.044 0.956 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.404 0.596 44 H 0.101 0.899 45 H 0.146 0.854 46 H 0.210 0.790 47 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 -6.079 -20.811 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.138 4.138 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.153 4.153 8 C 0.106 3.894 9 C 0.007 3.993 10 N -0.364 5.364 11 C -0.364 4.364 12 H 0.073 0.927 13 C -0.263 4.263 14 N -0.616 5.616 15 Si 0.793 3.207 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.205 1.205 19 N -0.359 5.359 20 C 0.296 3.704 21 O -0.409 6.409 22 C -0.108 4.108 23 C -0.071 4.071 24 C -0.387 4.387 25 S 0.408 5.592 26 C -0.297 4.297 27 N -0.204 5.204 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.015 0.985 40 H 0.062 0.938 41 H 0.208 0.792 42 H 0.057 0.943 43 H 0.240 0.760 44 H 0.119 0.881 45 H 0.164 0.836 46 H 0.227 0.773 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.793 -5.296 -20.376 22.121 hybrid contribution 0.975 0.065 1.729 1.986 sum -5.818 -5.232 -18.647 20.222 Atomic orbital electron populations 1.22190 0.95059 1.01446 0.99966 1.21429 0.95681 0.99077 0.94453 0.91349 1.21487 0.95911 1.00650 0.95780 1.21522 0.94847 1.00890 0.97744 1.21525 1.00824 0.99403 0.93121 1.21717 0.92656 1.01839 0.99105 1.20345 0.93790 0.81945 0.93364 1.21372 0.98850 0.92646 0.86451 1.42174 1.62771 1.30262 1.01211 1.19410 1.24775 1.06195 0.85974 0.92735 1.25323 1.02023 0.98232 1.00730 1.69762 1.43938 1.19136 1.28726 0.85357 0.77467 0.77297 0.80543 1.21641 1.21535 1.20524 1.45715 1.07824 1.08019 1.74353 1.20419 0.82502 0.90849 0.76630 1.90724 1.58178 1.46504 1.45455 1.20334 0.89286 0.95032 1.06189 1.19904 0.97471 0.99724 0.90036 1.27183 0.94559 1.10493 1.06484 1.83510 1.08769 1.54099 1.12798 1.28699 0.92948 1.03906 1.04151 1.66070 1.11669 1.17413 1.25253 0.93843 0.94318 0.92616 0.91508 0.91247 0.89992 0.92105 0.91082 0.90791 0.91342 0.93254 0.98548 0.93838 0.79173 0.94255 0.75977 0.88085 0.83578 0.77266 0.77854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.29 71.98 0.52 -3.60 16 2 C -0.09 -2.40 2.07 -10.80 -0.02 -2.42 16 3 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 4 C -0.10 -2.01 5.04 30.59 0.15 -1.85 16 5 C -0.11 -1.94 5.92 30.60 0.18 -1.76 16 6 C -0.11 -2.23 5.75 30.60 0.18 -2.06 16 7 C -0.12 -3.38 4.70 30.61 0.14 -3.24 16 8 C 0.19 6.29 0.32 3.62 0.00 6.29 16 9 C 0.13 6.11 4.44 86.38 0.38 6.50 16 10 N -0.72 -39.19 5.17 -343.44 -1.77 -40.96 16 11 C -0.23 -14.18 9.99 84.03 0.84 -13.34 16 12 H 0.05 3.38 7.83 -2.91 -0.02 3.36 16 13 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 14 N -0.96 -61.10 13.06 21.65 0.28 -60.81 16 15 Si 0.96 49.97 29.55 68.60 2.03 52.00 16 16 H -0.29 -14.96 7.11 99.48 0.71 -14.26 16 17 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 18 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 19 N -0.71 -21.40 3.58 -422.84 -1.51 -22.91 16 20 C 0.51 17.41 5.85 87.66 0.51 17.92 16 21 O -0.53 -22.57 8.91 -3.05 -0.03 -22.60 16 22 C -0.07 -1.76 6.20 29.10 0.18 -1.58 16 23 C 0.06 1.80 5.64 41.53 0.23 2.04 16 24 C -0.25 -5.28 11.07 66.78 0.74 -4.54 16 25 S 0.16 3.12 23.22 -56.49 -1.31 1.81 16 26 C 0.00 0.03 12.23 130.65 1.60 1.62 16 27 N -0.49 -17.97 9.68 -191.55 -1.85 -19.82 16 28 H 0.04 1.73 5.04 -2.39 -0.01 1.72 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.79 5.32 -2.39 -0.01 1.78 16 31 H 0.07 1.28 7.60 -2.39 -0.02 1.26 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.28 6.70 -2.39 -0.02 1.26 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 1.75 7.17 -2.39 -0.02 1.73 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.04 2.24 4.25 -2.39 -0.01 2.23 16 41 H 0.38 20.85 6.50 -92.72 -0.60 20.25 16 42 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.40 10.11 7.08 -92.71 -0.66 9.45 16 44 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 45 H 0.15 2.34 8.03 -2.39 -0.02 2.32 16 46 H 0.21 2.70 8.06 -2.91 -0.02 2.67 16 47 H 0.20 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -80.69 369.71 1.68 -79.01 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.26 Total: 38.20 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 6.11 Total: -3.91 kcal Atomic # 7 Polarization: -139.65 SS G_CDS: -4.86 Total: -144.51 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.03 Total: -22.60 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.03 Total: 52.00 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -80.69 1.68 -79.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495323256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.202 kcal (2) G-P(sol) polarization free energy of solvation -80.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds