Wall clock time and date at job start Tue Mar 31 2020 21:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47063 * 2 1 4 4 C 1.52994 * 109.47626 * 120.00465 * 2 1 3 5 5 C 1.53005 * 109.47216 * 59.99854 * 4 2 1 6 6 C 1.52999 * 109.47072 * 60.00043 * 5 4 2 7 7 C 1.53002 * 109.47370 * 300.00555 * 6 5 4 8 8 C 1.52998 * 109.47225 * 59.99714 * 7 6 5 9 9 C 1.53003 * 109.47141 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46649 * 294.65204 * 9 8 7 11 11 C 1.36935 * 119.99709 * 184.97585 * 10 9 8 12 12 H 1.08000 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.38818 * 119.99750 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99957 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99818 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46839 * 60.00637 * 15 13 11 17 17 H 1.48496 * 109.46802 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47203 * 300.00523 * 15 13 11 19 19 N 1.46495 * 109.47435 * 60.00289 * 8 7 6 20 20 C 1.34779 * 120.00342 * 184.32074 * 19 8 7 21 21 O 1.21281 * 119.99767 * 354.58622 * 20 19 8 22 22 C 1.50700 * 120.00123 * 174.58296 * 20 19 8 23 23 C 1.50700 * 109.46870 * 180.02562 * 22 20 19 24 24 C 1.33641 * 122.74697 * 125.00548 * 23 22 20 25 25 S 1.76205 * 107.92094 * 179.97438 * 24 23 22 26 26 C 1.70974 * 90.28215 * 359.97438 * 25 24 23 27 27 N 1.29031 * 110.17089 * 359.73535 * 26 25 24 28 28 H 1.09001 * 109.47047 * 299.99668 * 1 2 3 29 29 H 1.09002 * 109.47475 * 59.99768 * 1 2 3 30 30 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46798 * 300.00019 * 4 2 1 32 32 H 1.08996 * 109.47814 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47481 * 180.02562 * 5 4 2 34 34 H 1.09008 * 109.46904 * 300.00509 * 5 4 2 35 35 H 1.09007 * 109.46911 * 59.99896 * 6 5 4 36 36 H 1.08993 * 109.47158 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47104 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.46543 * 299.99738 * 7 6 5 39 39 H 1.08999 * 109.47095 * 54.65208 * 9 8 7 40 40 H 1.08999 * 109.47240 * 174.65894 * 9 8 7 41 41 H 0.97000 * 120.00211 * 4.97698 * 10 9 8 42 42 H 0.96998 * 119.99810 * 180.02562 * 14 13 11 43 43 H 0.96998 * 119.99901 * 4.31844 * 19 8 7 44 44 H 1.09005 * 109.46887 * 299.99958 * 22 20 19 45 45 H 1.08998 * 109.46722 * 59.99715 * 22 20 19 46 46 H 1.07992 * 126.04126 * 359.97438 * 24 23 22 47 47 H 1.07999 * 124.91631 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -2.1639 1.2491 6 6 2.0400 -2.8850 -0.0003 7 6 1.5301 -2.1637 -1.2495 8 6 2.0400 -0.7212 -1.2494 9 6 1.5295 0.0004 -2.4983 10 7 2.1197 -0.6118 -3.6913 11 6 1.8882 -0.0669 -4.9261 12 1 1.2710 0.8143 -5.0204 13 6 2.4479 -0.6465 -6.0565 14 7 3.2006 -1.7201 -5.9414 15 14 2.1328 0.0972 -7.7409 16 1 2.6364 1.4939 -7.7673 17 1 2.8369 -0.7030 -8.7748 18 1 0.6742 0.0915 -8.0194 19 7 3.5050 -0.7211 -1.2494 20 6 4.1789 0.4428 -1.1614 21 8 3.5765 1.4953 -1.1812 22 6 5.6808 0.4365 -1.0384 23 6 6.1841 1.8546 -0.9566 24 6 6.9558 2.2913 0.0433 25 16 7.3125 3.9917 -0.2500 26 6 6.3892 3.9461 -1.6883 27 7 5.9051 2.7638 -1.8689 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6768 -0.2075 2.1391 32 1 3.1301 -0.7209 1.2494 33 1 1.8931 -2.6777 2.1392 34 1 0.4400 -2.1639 1.2491 35 1 3.1301 -2.8849 -0.0003 36 1 1.6771 -3.9128 -0.0001 37 1 1.8937 -2.6772 -2.1395 38 1 0.4401 -2.1637 -1.2494 39 1 0.4437 -0.0818 -2.5470 40 1 1.8126 1.0519 -2.4517 41 1 2.6744 -1.4030 -3.6066 42 1 3.5919 -2.1250 -6.7313 43 1 3.9900 -1.5587 -1.3128 44 1 5.9692 -0.1037 -0.1366 45 1 6.1146 -0.0538 -1.9099 46 1 7.2999 1.7055 0.8827 47 1 6.2374 4.7842 -2.3523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495323257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:41 Heat of formation + Delta-G solvation = 16.087179 kcal Electronic energy + Delta-G solvation = -28697.182666 eV Core-core repulsion = 25006.867917 eV Total energy + Delta-G solvation = -3690.314749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61672 -39.69026 -37.61841 -34.63209 -33.16569 -32.27491 -31.79660 -31.00209 -29.45163 -28.14483 -26.25063 -24.97986 -24.71786 -22.87315 -21.91927 -21.16717 -20.18385 -19.40546 -18.09104 -17.94337 -17.05260 -16.67680 -15.91351 -15.48499 -15.28492 -14.84981 -14.46434 -14.21724 -13.84632 -13.71106 -13.59233 -13.22197 -13.17693 -12.94787 -12.85419 -12.60778 -12.38304 -12.28779 -11.97783 -11.84946 -11.43133 -11.35449 -11.28809 -11.00355 -10.87128 -10.73836 -10.65132 -10.21253 -10.06701 -9.97089 -9.78321 -9.53823 -9.46799 -9.39671 -9.06480 -8.78339 -8.63034 -8.31107 -6.73337 -5.64734 -2.89435 0.77819 1.44083 1.75215 2.90312 3.21748 3.52418 3.55766 3.58073 3.73368 4.28292 4.70227 4.85211 4.92769 4.95113 4.96833 5.14963 5.24328 5.30507 5.35527 5.38575 5.52492 5.56963 5.62133 5.71215 5.72861 5.78518 5.83621 5.86501 5.88896 6.05940 6.14134 6.16148 6.21489 6.25740 6.27527 6.39773 6.51527 6.60484 6.63747 6.72208 6.80978 7.06749 7.27720 7.83201 7.89505 8.08027 8.55548 8.83303 9.66816 10.26020 10.61691 11.58787 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007476 B = 0.005181 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.202849 B = 5403.307267 C = 8200.989377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.122 4.122 8 C 0.186 3.814 9 C 0.142 3.858 10 N -0.723 5.723 11 C -0.224 4.224 12 H 0.066 0.934 13 C -0.016 4.016 14 N -0.938 5.938 15 Si 0.903 3.097 16 H -0.288 1.288 17 H -0.293 1.293 18 H -0.288 1.288 19 N -0.711 5.711 20 C 0.527 3.473 21 O -0.516 6.516 22 C -0.072 4.072 23 C 0.097 3.903 24 C -0.259 4.259 25 S 0.087 5.913 26 C 0.031 3.969 27 N -0.432 5.432 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.018 0.982 40 H 0.045 0.955 41 H 0.381 0.619 42 H 0.252 0.748 43 H 0.394 0.606 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.175 0.825 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.829 2.625 18.690 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.160 4.160 8 C 0.100 3.900 9 C 0.014 3.986 10 N -0.367 5.367 11 C -0.356 4.356 12 H 0.084 0.916 13 C -0.211 4.211 14 N -0.588 5.588 15 Si 0.735 3.265 16 H -0.215 1.215 17 H -0.219 1.219 18 H -0.215 1.215 19 N -0.362 5.362 20 C 0.312 3.688 21 O -0.391 6.391 22 C -0.115 4.115 23 C -0.036 4.036 24 C -0.398 4.398 25 S 0.339 5.661 26 C -0.268 4.268 27 N -0.144 5.144 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.036 0.964 40 H 0.063 0.937 41 H 0.214 0.786 42 H 0.062 0.938 43 H 0.228 0.772 44 H 0.121 0.879 45 H 0.129 0.871 46 H 0.192 0.808 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.566 4.202 18.569 19.836 hybrid contribution 0.035 -1.081 -1.200 1.615 sum 5.601 3.121 17.369 18.515 Atomic orbital electron populations 1.21953 0.95149 1.01779 1.01619 1.21434 0.95757 1.01267 0.93523 0.89050 1.21476 1.00344 0.95307 0.97350 1.21572 1.00910 0.95797 0.97392 1.21537 1.00544 0.98691 0.94750 1.21821 1.01690 0.94309 0.98157 1.20459 0.79021 0.95353 0.95203 1.21128 0.95072 0.96991 0.85394 1.42191 1.60128 1.33292 1.01095 1.19179 1.24319 1.07794 0.84283 0.91607 1.24631 1.00702 0.98255 0.97534 1.69629 1.38196 1.22724 1.28290 0.86307 0.77418 0.78288 0.84483 1.21451 1.21856 1.21482 1.45831 1.06767 1.08357 1.75282 1.19904 0.88490 0.84104 0.76339 1.90651 1.69410 1.30900 1.48152 1.20285 0.94579 0.91639 1.05008 1.19691 0.97071 0.96216 0.90642 1.26715 1.09191 0.97966 1.05886 1.83852 1.50132 1.08563 1.23521 1.28462 0.99664 0.98940 0.99752 1.66075 1.19692 1.00189 1.28463 0.93270 0.92042 0.92334 0.92742 0.92425 0.92778 0.91829 0.92266 0.92177 0.90355 0.90444 0.96423 0.93744 0.78565 0.93809 0.77150 0.87894 0.87066 0.80766 0.78610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.15 37.16 0.30 -1.69 16 2 C -0.10 -1.47 1.97 -90.62 -0.18 -1.65 16 3 H 0.09 1.61 6.05 -51.93 -0.31 1.29 16 4 C -0.11 -1.29 5.29 -26.73 -0.14 -1.43 16 5 C -0.12 -1.28 5.65 -26.73 -0.15 -1.43 16 6 C -0.12 -1.35 5.75 -26.73 -0.15 -1.50 16 7 C -0.12 -1.80 4.36 -26.73 -0.12 -1.91 16 8 C 0.19 3.04 0.09 -131.82 -0.01 3.03 16 9 C 0.14 3.09 4.42 -4.04 -0.02 3.07 16 10 N -0.72 -18.65 5.19 -59.90 -0.31 -18.96 16 11 C -0.22 -6.56 9.99 -15.06 -0.15 -6.71 16 12 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 13 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 14 N -0.94 -28.66 13.06 55.49 0.72 -27.93 16 15 Si 0.90 23.44 29.55 -169.99 -5.02 18.42 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 N -0.71 -11.10 3.48 -47.60 -0.17 -11.26 16 20 C 0.53 9.00 7.13 -10.98 -0.08 8.93 16 21 O -0.52 -10.74 11.76 5.56 0.07 -10.68 16 22 C -0.07 -0.98 6.20 -29.03 -0.18 -1.16 16 23 C 0.10 1.43 5.62 -84.22 -0.47 0.95 16 24 C -0.26 -2.99 11.07 29.12 0.32 -2.67 16 25 S 0.09 0.92 23.22 -107.50 -2.50 -1.58 16 26 C 0.03 0.42 12.23 51.59 0.63 1.05 16 27 N -0.43 -7.43 9.70 -11.90 -0.12 -7.55 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.92 6.55 -51.93 -0.34 0.58 16 30 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.70 7.54 -51.93 -0.39 0.31 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.68 6.43 -51.92 -0.33 0.34 16 35 H 0.06 0.64 6.95 -51.93 -0.36 0.28 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.34 7.10 -51.93 -0.37 0.97 16 38 H 0.08 1.14 6.43 -51.93 -0.33 0.80 16 39 H 0.02 0.39 6.73 -51.93 -0.35 0.05 16 40 H 0.04 1.10 6.46 -51.93 -0.34 0.77 16 41 H 0.38 9.98 6.46 -40.82 -0.26 9.72 16 42 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.39 5.37 7.48 -40.82 -0.31 5.06 16 44 H 0.10 0.97 8.03 -51.93 -0.42 0.55 16 45 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 47 H 0.20 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -35.43 370.68 -9.10 -44.52 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -6.87 Total: 13.14 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.49 Total: -3.72 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: 0.13 Total: -65.70 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.42 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.43 -9.10 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495323257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.611 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds