Wall clock time and date at job start Tue Mar 31 2020 21:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47063 * 2 1 4 4 C 1.52994 * 109.47626 * 120.00465 * 2 1 3 5 5 C 1.53005 * 109.47216 * 59.99854 * 4 2 1 6 6 C 1.52999 * 109.47072 * 60.00043 * 5 4 2 7 7 C 1.53002 * 109.47370 * 300.00555 * 6 5 4 8 8 C 1.52998 * 109.47225 * 59.99714 * 7 6 5 9 9 C 1.53003 * 109.47141 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46649 * 294.65204 * 9 8 7 11 11 C 1.36935 * 119.99709 * 184.97585 * 10 9 8 12 12 H 1.08000 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.38818 * 119.99750 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99957 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99818 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46839 * 60.00637 * 15 13 11 17 17 H 1.48496 * 109.46802 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47203 * 300.00523 * 15 13 11 19 19 N 1.46495 * 109.47435 * 60.00289 * 8 7 6 20 20 C 1.34779 * 120.00342 * 184.32074 * 19 8 7 21 21 O 1.21281 * 119.99767 * 354.58622 * 20 19 8 22 22 C 1.50700 * 120.00123 * 174.58296 * 20 19 8 23 23 C 1.50700 * 109.46870 * 180.02562 * 22 20 19 24 24 C 1.33641 * 122.74697 * 125.00548 * 23 22 20 25 25 S 1.76205 * 107.92094 * 179.97438 * 24 23 22 26 26 C 1.70974 * 90.28215 * 359.97438 * 25 24 23 27 27 N 1.29031 * 110.17089 * 359.73535 * 26 25 24 28 28 H 1.09001 * 109.47047 * 299.99668 * 1 2 3 29 29 H 1.09002 * 109.47475 * 59.99768 * 1 2 3 30 30 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46798 * 300.00019 * 4 2 1 32 32 H 1.08996 * 109.47814 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47481 * 180.02562 * 5 4 2 34 34 H 1.09008 * 109.46904 * 300.00509 * 5 4 2 35 35 H 1.09007 * 109.46911 * 59.99896 * 6 5 4 36 36 H 1.08993 * 109.47158 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47104 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.46543 * 299.99738 * 7 6 5 39 39 H 1.08999 * 109.47095 * 54.65208 * 9 8 7 40 40 H 1.08999 * 109.47240 * 174.65894 * 9 8 7 41 41 H 0.97000 * 120.00211 * 4.97698 * 10 9 8 42 42 H 0.96998 * 119.99810 * 180.02562 * 14 13 11 43 43 H 0.96998 * 119.99901 * 4.31844 * 19 8 7 44 44 H 1.09005 * 109.46887 * 299.99958 * 22 20 19 45 45 H 1.08998 * 109.46722 * 59.99715 * 22 20 19 46 46 H 1.07992 * 126.04126 * 359.97438 * 24 23 22 47 47 H 1.07999 * 124.91631 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -2.1639 1.2491 6 6 2.0400 -2.8850 -0.0003 7 6 1.5301 -2.1637 -1.2495 8 6 2.0400 -0.7212 -1.2494 9 6 1.5295 0.0004 -2.4983 10 7 2.1197 -0.6118 -3.6913 11 6 1.8882 -0.0669 -4.9261 12 1 1.2710 0.8143 -5.0204 13 6 2.4479 -0.6465 -6.0565 14 7 3.2006 -1.7201 -5.9414 15 14 2.1328 0.0972 -7.7409 16 1 2.6364 1.4939 -7.7673 17 1 2.8369 -0.7030 -8.7748 18 1 0.6742 0.0915 -8.0194 19 7 3.5050 -0.7211 -1.2494 20 6 4.1789 0.4428 -1.1614 21 8 3.5765 1.4953 -1.1812 22 6 5.6808 0.4365 -1.0384 23 6 6.1841 1.8546 -0.9566 24 6 6.9558 2.2913 0.0433 25 16 7.3125 3.9917 -0.2500 26 6 6.3892 3.9461 -1.6883 27 7 5.9051 2.7638 -1.8689 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6768 -0.2075 2.1391 32 1 3.1301 -0.7209 1.2494 33 1 1.8931 -2.6777 2.1392 34 1 0.4400 -2.1639 1.2491 35 1 3.1301 -2.8849 -0.0003 36 1 1.6771 -3.9128 -0.0001 37 1 1.8937 -2.6772 -2.1395 38 1 0.4401 -2.1637 -1.2494 39 1 0.4437 -0.0818 -2.5470 40 1 1.8126 1.0519 -2.4517 41 1 2.6744 -1.4030 -3.6066 42 1 3.5919 -2.1250 -6.7313 43 1 3.9900 -1.5587 -1.3128 44 1 5.9692 -0.1037 -0.1366 45 1 6.1146 -0.0538 -1.9099 46 1 7.2999 1.7055 0.8827 47 1 6.2374 4.7842 -2.3523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495323257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:40 Heat of formation + Delta-G solvation = -8.280089 kcal Electronic energy + Delta-G solvation = -28698.239310 eV Core-core repulsion = 25006.867917 eV Total energy + Delta-G solvation = -3691.371393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.87149 -40.73841 -38.86973 -36.45431 -34.67974 -33.60492 -32.87355 -32.65652 -30.95739 -29.16077 -27.67696 -26.50682 -25.73809 -24.70918 -23.04415 -22.48541 -21.46273 -20.41899 -19.45136 -19.12145 -18.90082 -17.87958 -17.08328 -16.77129 -16.60364 -16.19045 -16.08396 -15.54198 -15.23214 -15.07040 -14.78511 -14.59225 -14.52375 -14.12107 -14.09535 -13.91454 -13.77817 -13.56184 -13.15890 -13.03531 -12.90328 -12.82810 -12.64404 -12.44726 -12.27684 -12.21402 -12.14071 -11.93206 -11.81331 -11.20177 -11.09512 -11.01403 -10.87946 -10.46419 -10.39188 -10.22492 -9.74051 -9.64744 -8.91896 -7.94892 -5.19655 -0.15859 0.56905 0.81125 1.41262 1.44848 1.50574 1.84786 1.91838 2.50385 2.56656 3.35436 3.38042 3.66333 3.85470 3.87839 3.98477 4.12060 4.15555 4.26421 4.30341 4.38960 4.44768 4.48817 4.53684 4.59292 4.59767 4.72756 4.78877 4.82309 4.88976 4.92706 4.99263 5.15475 5.17693 5.18912 5.21496 5.28519 5.31078 5.42677 5.46986 5.47940 5.55717 5.64548 5.88153 6.28443 6.81450 6.95826 7.35512 7.55772 8.11456 8.40428 9.27962 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007476 B = 0.005181 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.202849 B = 5403.307267 C = 8200.989377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.058 0.942 4 C -0.100 4.100 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.116 4.116 8 C 0.193 3.807 9 C 0.147 3.853 10 N -0.726 5.726 11 C -0.242 4.242 12 H 0.056 0.944 13 C -0.066 4.066 14 N -0.962 5.962 15 Si 0.965 3.035 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.278 1.278 19 N -0.705 5.705 20 C 0.517 3.483 21 O -0.559 6.559 22 C -0.066 4.066 23 C 0.058 3.942 24 C -0.248 4.248 25 S 0.161 5.839 26 C 0.002 3.998 27 N -0.496 5.496 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.008 0.992 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.405 0.595 44 H 0.149 0.851 45 H 0.104 0.896 46 H 0.211 0.789 47 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 1.721 21.232 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.077 0.923 4 C -0.138 4.138 5 C -0.150 4.150 6 C -0.148 4.148 7 C -0.154 4.154 8 C 0.107 3.893 9 C 0.019 3.981 10 N -0.369 5.369 11 C -0.374 4.374 12 H 0.074 0.926 13 C -0.259 4.259 14 N -0.612 5.612 15 Si 0.794 3.206 16 H -0.216 1.216 17 H -0.213 1.213 18 H -0.204 1.204 19 N -0.357 5.357 20 C 0.304 3.696 21 O -0.437 6.437 22 C -0.109 4.109 23 C -0.074 4.074 24 C -0.387 4.387 25 S 0.413 5.587 26 C -0.296 4.296 27 N -0.209 5.209 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.211 0.789 42 H 0.060 0.940 43 H 0.241 0.759 44 H 0.167 0.833 45 H 0.122 0.878 46 H 0.228 0.772 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.518 3.293 21.131 22.357 hybrid contribution -0.244 -0.676 -1.962 2.089 sum 6.273 2.617 19.170 20.339 Atomic orbital electron populations 1.21938 0.94373 1.02612 1.01337 1.21327 0.96382 0.99587 0.94102 0.92328 1.21433 1.00400 0.96122 0.95830 1.21552 1.01193 0.94547 0.97750 1.21517 1.01150 0.99073 0.93097 1.21745 1.01565 0.92929 0.99136 1.20313 0.79656 0.96077 0.93274 1.21141 0.94629 0.95494 0.86795 1.42240 1.60119 1.33121 1.01391 1.19441 1.24263 1.07646 0.86044 0.92606 1.25353 1.00858 0.98898 1.00795 1.69757 1.38882 1.23631 1.28978 0.85345 0.77679 0.77249 0.80305 1.21577 1.21336 1.20412 1.45813 1.06464 1.08733 1.74643 1.20631 0.90122 0.83573 0.75280 1.90636 1.70643 1.32423 1.49971 1.20340 0.91468 0.92211 1.06838 1.19884 0.99187 0.96483 0.91833 1.27193 1.07041 0.99020 1.05449 1.83523 1.47567 1.07116 1.20474 1.28737 1.00438 0.98579 1.01842 1.66060 1.21918 1.01975 1.30969 0.91382 0.94536 0.90855 0.91469 0.92314 0.90219 0.91390 0.91301 0.90539 0.93041 0.90556 0.96880 0.97444 0.78946 0.94014 0.75910 0.83299 0.87837 0.77216 0.77446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 8.15 71.98 0.59 -3.30 16 2 C -0.09 -2.78 1.97 -10.79 -0.02 -2.80 16 3 H 0.06 2.15 6.05 -2.38 -0.01 2.14 16 4 C -0.10 -2.18 5.29 30.59 0.16 -2.02 16 5 C -0.11 -2.01 5.65 30.60 0.17 -1.84 16 6 C -0.11 -2.25 5.75 30.59 0.18 -2.07 16 7 C -0.12 -3.37 4.36 30.59 0.13 -3.23 16 8 C 0.19 6.48 0.09 3.61 0.00 6.48 16 9 C 0.15 6.77 4.42 86.38 0.38 7.15 16 10 N -0.73 -39.20 5.19 -343.44 -1.78 -40.98 16 11 C -0.24 -14.69 9.99 84.04 0.84 -13.85 16 12 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 13 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 14 N -0.96 -59.78 13.06 21.65 0.28 -59.49 16 15 Si 0.96 49.10 29.55 68.60 2.03 51.13 16 16 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 17 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 18 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 19 N -0.70 -22.32 3.48 -422.91 -1.47 -23.79 16 20 C 0.52 18.18 7.13 87.66 0.63 18.80 16 21 O -0.56 -24.60 11.76 -3.03 -0.04 -24.64 16 22 C -0.07 -1.78 6.20 29.10 0.18 -1.60 16 23 C 0.06 1.71 5.62 41.52 0.23 1.94 16 24 C -0.25 -5.18 11.07 66.78 0.74 -4.44 16 25 S 0.16 3.07 23.22 -56.49 -1.31 1.76 16 26 C 0.00 0.05 12.23 130.65 1.60 1.65 16 27 N -0.50 -17.69 9.70 -191.55 -1.86 -19.54 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.04 1.13 6.55 -2.39 -0.02 1.12 16 30 H 0.07 1.73 4.81 -2.39 -0.01 1.72 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.28 7.54 -2.39 -0.02 1.26 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.19 6.43 -2.38 -0.02 1.17 16 35 H 0.07 1.28 6.95 -2.38 -0.02 1.27 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.78 7.10 -2.39 -0.02 1.76 16 38 H 0.08 2.21 6.43 -2.39 -0.02 2.19 16 39 H 0.01 0.63 6.73 -2.39 -0.02 0.61 16 40 H 0.01 0.40 6.46 -2.39 -0.02 0.39 16 41 H 0.38 20.60 6.46 -92.71 -0.60 20.00 16 42 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.40 10.89 7.48 -92.71 -0.69 10.20 16 44 H 0.15 2.42 8.03 -2.38 -0.02 2.40 16 45 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.21 2.64 8.06 -2.91 -0.02 2.61 16 47 H 0.21 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -81.29 370.68 1.84 -79.45 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -0.28 Total: 38.79 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.27 Total: -2.68 kcal Atomic # 7 Polarization: -138.98 SS G_CDS: -4.83 Total: -143.81 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.04 Total: -24.64 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.03 Total: 51.13 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -81.29 1.84 -79.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495323257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.171 kcal (2) G-P(sol) polarization free energy of solvation -81.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds