Wall clock time and date at job start Tue Mar 31 2020 21:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47069 * 2 1 4 4 C 1.53000 * 109.47519 * 120.00182 * 2 1 3 5 5 C 1.52990 * 109.47483 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47052 * 299.99865 * 5 4 2 7 7 C 1.52998 * 109.47284 * 60.00089 * 6 5 4 8 8 C 1.53001 * 109.47329 * 240.00239 * 2 1 3 9 9 C 1.52998 * 109.47284 * 59.99875 * 8 2 1 10 10 N 1.46506 * 109.47126 * 64.30414 * 9 8 2 11 11 C 1.36933 * 120.00023 * 174.92143 * 10 9 8 12 12 H 1.08006 * 120.00088 * 359.72251 * 11 10 9 13 13 C 1.38811 * 120.00211 * 179.72238 * 11 10 9 14 14 N 1.31623 * 119.99939 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00251 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47258 * 60.00373 * 15 13 11 17 17 H 1.48500 * 109.47113 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47222 * 300.00293 * 15 13 11 19 19 N 1.46495 * 109.47133 * 299.99687 * 8 2 1 20 20 C 1.34776 * 120.00136 * 184.15869 * 19 8 2 21 21 O 1.21285 * 119.99897 * 354.52350 * 20 19 8 22 22 C 1.50705 * 119.99992 * 174.51927 * 20 19 8 23 23 C 1.50697 * 109.47094 * 180.02562 * 22 20 19 24 24 C 1.33645 * 122.75080 * 124.99813 * 23 22 20 25 25 S 1.76199 * 107.92426 * 179.97438 * 24 23 22 26 26 C 1.70983 * 90.28397 * 0.02562 * 25 24 23 27 27 N 1.29024 * 110.16500 * 359.73352 * 26 25 24 28 28 H 1.09006 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47429 * 299.99878 * 1 2 3 30 30 H 1.09001 * 109.47213 * 60.00217 * 1 2 3 31 31 H 1.09004 * 109.46440 * 300.00287 * 4 2 1 32 32 H 1.09002 * 109.47095 * 59.99415 * 4 2 1 33 33 H 1.09000 * 109.47893 * 59.99957 * 5 4 2 34 34 H 1.09003 * 109.47360 * 180.02562 * 5 4 2 35 35 H 1.09003 * 109.47122 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.47060 * 299.99797 * 6 5 4 37 37 H 1.08996 * 109.47138 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.46806 * 59.99755 * 7 6 5 39 39 H 1.09003 * 109.47234 * 304.30444 * 9 8 2 40 40 H 1.08997 * 109.47483 * 184.30162 * 9 8 2 41 41 H 0.97002 * 119.99698 * 354.64002 * 10 9 8 42 42 H 0.96998 * 120.00112 * 180.02562 * 14 13 11 43 43 H 0.96998 * 119.99929 * 4.16647 * 19 8 2 44 44 H 1.09000 * 109.47058 * 300.00283 * 22 20 19 45 45 H 1.08993 * 109.47161 * 60.00507 * 22 20 19 46 46 H 1.07994 * 126.03592 * 0.02562 * 24 23 22 47 47 H 1.08001 * 124.91264 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7207 1.2495 6 6 4.0804 -1.4416 0.0002 7 6 3.5705 -0.7203 -1.2490 8 6 2.0400 -0.7212 -1.2493 9 6 1.5300 0.0000 -2.4985 10 7 2.1011 1.3482 -2.5514 11 6 1.8694 2.1477 -3.6386 12 1 1.2693 1.7829 -4.4592 13 6 2.4057 3.4271 -3.6863 14 7 3.1366 3.8720 -2.6861 15 14 2.0902 4.5176 -5.1697 16 1 0.6291 4.7353 -5.3223 17 1 2.7672 5.8250 -4.9760 18 1 2.6227 3.8598 -6.3898 19 7 1.5518 -2.1024 -1.2493 20 6 1.9451 -2.9562 -2.2151 21 8 2.6224 -2.5568 -3.1386 22 6 1.5433 -4.4071 -2.1476 23 6 2.1074 -5.1404 -3.3372 24 6 2.8739 -6.2287 -3.2188 25 16 3.3119 -6.7625 -4.8399 26 6 2.4214 -5.4687 -5.5157 27 7 1.8809 -4.7640 -4.5797 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6766 -0.2074 2.1392 32 1 1.6766 -1.7489 1.2492 33 1 3.9330 0.3070 1.2498 34 1 3.9333 -1.2350 2.1392 35 1 5.1705 -1.4416 0.0007 36 1 3.7175 -2.4694 0.0000 37 1 3.9345 -1.2336 -2.1389 38 1 3.9334 0.3074 -1.2487 39 1 0.4427 0.0673 -2.4608 40 1 1.8291 -0.5563 -3.3868 41 1 2.6400 1.6758 -1.8144 42 1 3.5111 4.7662 -2.7192 43 1 0.9453 -2.4024 -0.5543 44 1 1.9324 -4.8495 -1.2306 45 1 0.4561 -4.4838 -2.1552 46 1 3.1716 -6.6985 -2.2931 47 1 2.3215 -5.2729 -6.5731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495323258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:43 Heat of formation + Delta-G solvation = -8.789991 kcal Electronic energy + Delta-G solvation = -28419.382709 eV Core-core repulsion = 24727.989205 eV Total energy + Delta-G solvation = -3691.393504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.88827 -40.71131 -38.90038 -36.34560 -34.78756 -33.63231 -33.33745 -32.80094 -30.72393 -28.95404 -27.73994 -26.48898 -25.80518 -24.78059 -23.04213 -21.97540 -21.76016 -20.40703 -19.78017 -19.23998 -19.10441 -17.98649 -16.96987 -16.65035 -16.30357 -16.15260 -16.01595 -15.45763 -15.31120 -15.17064 -14.99076 -14.75546 -14.67240 -14.30399 -14.09167 -13.97454 -13.70528 -13.30308 -13.08563 -13.00751 -12.91799 -12.75146 -12.70673 -12.51235 -12.27577 -12.25945 -12.17665 -11.86536 -11.77800 -11.37642 -11.14187 -11.05766 -10.85683 -10.49829 -10.40292 -10.24443 -9.83551 -9.68022 -8.95722 -7.96401 -5.23430 -0.14695 0.57679 0.83985 1.41480 1.45587 1.51677 1.82430 1.87120 2.41208 2.57109 3.34579 3.35815 3.67018 3.83023 3.83881 3.96744 4.07623 4.16995 4.20372 4.30370 4.35563 4.46542 4.49447 4.54712 4.57176 4.59796 4.66097 4.76589 4.80134 4.92653 4.97960 5.01655 5.11591 5.17076 5.20307 5.22423 5.29559 5.34208 5.39965 5.43235 5.47357 5.54986 5.59204 5.81154 6.26241 6.80100 6.93010 7.32295 7.53805 8.08187 8.34752 9.26774 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.003776 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.150414 B = 7412.987857 C = 9223.993106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.052 0.948 4 C -0.102 4.102 5 C -0.118 4.118 6 C -0.103 4.103 7 C -0.119 4.119 8 C 0.200 3.800 9 C 0.148 3.852 10 N -0.730 5.730 11 C -0.246 4.246 12 H 0.061 0.939 13 C -0.070 4.070 14 N -0.966 5.966 15 Si 0.971 3.029 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.285 1.285 19 N -0.703 5.703 20 C 0.507 3.493 21 O -0.560 6.560 22 C -0.060 4.060 23 C 0.056 3.944 24 C -0.250 4.250 25 S 0.149 5.851 26 C 0.003 3.997 27 N -0.491 5.491 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.014 0.986 40 H 0.010 0.990 41 H 0.376 0.624 42 H 0.252 0.748 43 H 0.414 0.586 44 H 0.150 0.850 45 H 0.127 0.873 46 H 0.210 0.790 47 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 -25.890 9.288 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.071 0.929 4 C -0.139 4.139 5 C -0.155 4.155 6 C -0.141 4.141 7 C -0.158 4.158 8 C 0.113 3.887 9 C 0.020 3.980 10 N -0.374 5.374 11 C -0.378 4.378 12 H 0.079 0.921 13 C -0.262 4.262 14 N -0.616 5.616 15 Si 0.800 3.200 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.211 1.211 19 N -0.358 5.358 20 C 0.293 3.707 21 O -0.437 6.437 22 C -0.102 4.102 23 C -0.077 4.077 24 C -0.389 4.389 25 S 0.401 5.599 26 C -0.295 4.295 27 N -0.205 5.205 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.028 0.972 41 H 0.210 0.790 42 H 0.061 0.939 43 H 0.253 0.747 44 H 0.168 0.832 45 H 0.145 0.855 46 H 0.227 0.773 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.395 -25.937 7.877 27.212 hybrid contribution -0.288 1.903 -0.408 1.968 sum -2.682 -24.034 7.469 25.310 Atomic orbital electron populations 1.21820 0.93900 1.02614 1.01590 1.21278 0.96802 0.98881 0.93712 0.92934 1.21570 0.94951 1.01394 0.96030 1.21549 0.96272 1.00059 0.97643 1.21420 0.99611 0.99560 0.93491 1.21723 0.95138 0.99865 0.99075 1.20006 0.92998 0.81424 0.94248 1.21099 0.94873 0.85365 0.96653 1.42373 1.61764 1.12057 1.21250 1.19494 1.25570 0.95271 0.97440 0.92108 1.25466 1.00898 0.98867 1.00974 1.69795 1.40196 1.18337 1.33299 0.85256 0.77781 0.77916 0.79090 1.20250 1.21388 1.21141 1.45822 1.50090 1.09897 1.29950 1.21019 0.79572 0.88835 0.81225 1.90751 1.39684 1.79059 1.34254 1.20365 1.04121 0.89289 0.96382 1.19996 1.00254 0.95393 0.92026 1.27207 1.05956 1.02568 1.03131 1.83713 1.48767 1.29093 0.98294 1.28724 1.00007 0.96365 1.04406 1.66048 1.24250 1.29359 1.00855 0.90330 0.91219 0.94864 0.90298 0.89339 0.93884 0.89460 0.92826 0.90676 0.93444 0.94293 0.96857 0.97178 0.79011 0.93908 0.74730 0.83183 0.85528 0.77347 0.77374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.67 71.98 0.62 -3.06 16 2 C -0.09 -2.58 1.87 -10.80 -0.02 -2.60 16 3 H 0.05 2.00 7.03 -2.38 -0.02 1.99 16 4 C -0.10 -2.08 5.03 30.59 0.15 -1.92 16 5 C -0.12 -2.68 5.92 30.59 0.18 -2.50 16 6 C -0.10 -2.78 5.77 30.59 0.18 -2.60 16 7 C -0.12 -4.51 4.24 30.61 0.13 -4.38 16 8 C 0.20 6.83 0.11 3.62 0.00 6.83 16 9 C 0.15 6.90 4.96 86.38 0.43 7.33 16 10 N -0.73 -40.71 4.99 -343.44 -1.71 -42.42 16 11 C -0.25 -15.12 9.99 84.03 0.84 -14.28 16 12 H 0.06 3.73 7.83 -2.91 -0.02 3.70 16 13 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 14 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 15 Si 0.97 49.32 29.55 68.60 2.03 51.35 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 18 H -0.28 -14.27 7.11 99.48 0.71 -13.57 16 19 N -0.70 -17.63 3.74 -422.85 -1.58 -19.21 16 20 C 0.51 14.52 7.13 87.66 0.63 15.15 16 21 O -0.56 -23.08 11.67 -3.05 -0.04 -23.12 16 22 C -0.06 -1.07 6.20 29.10 0.18 -0.89 16 23 C 0.06 1.29 5.63 41.52 0.23 1.52 16 24 C -0.25 -4.21 11.07 66.78 0.74 -3.47 16 25 S 0.15 2.44 23.22 -56.49 -1.31 1.12 16 26 C 0.00 0.06 12.23 130.65 1.60 1.66 16 27 N -0.49 -14.39 9.69 -191.54 -1.86 -16.25 16 28 H 0.08 1.48 6.78 -2.38 -0.02 1.46 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.10 6.34 -2.39 -0.02 1.08 16 31 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.09 1.27 6.95 -2.39 -0.02 1.25 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.70 7.55 -2.39 -0.02 1.68 16 37 H 0.05 2.11 6.07 -2.39 -0.01 2.09 16 38 H 0.04 1.76 6.72 -2.39 -0.02 1.74 16 39 H 0.01 0.64 6.21 -2.39 -0.01 0.62 16 40 H 0.01 0.55 6.20 -2.39 -0.01 0.54 16 41 H 0.38 21.70 5.38 -92.71 -0.50 21.21 16 42 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.41 6.75 6.18 -92.71 -0.57 6.18 16 44 H 0.15 1.29 8.03 -2.39 -0.02 1.27 16 45 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 47 H 0.21 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -85.10 372.09 2.10 -83.00 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.07 Total: 33.87 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 6.36 Total: -7.00 kcal Atomic # 7 Polarization: -134.37 SS G_CDS: -4.87 Total: -139.24 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.04 Total: -23.12 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.03 Total: 51.35 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.31 Total: 1.12 kcal Total: -85.10 2.10 -83.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495323258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.214 kcal (2) G-P(sol) polarization free energy of solvation -85.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds