Wall clock time and date at job start Tue Mar 31 2020 19:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47215 * 33.24296 * 3 2 1 5 5 C 1.34772 * 120.00774 * 261.48884 * 4 3 2 6 6 O 1.21573 * 120.00546 * 173.72328 * 5 4 3 7 7 C 1.47680 * 119.99388 * 353.71540 * 5 4 3 8 8 C 1.40238 * 120.43592 * 209.46728 * 7 5 4 9 9 C 1.37979 * 118.39298 * 180.02562 * 8 7 5 10 10 C 1.39727 * 119.20679 * 0.02562 * 9 8 7 11 11 C 1.43191 * 119.59162 * 179.97438 * 10 9 8 12 12 C 7.48104 * 109.53901 * 288.14500 * 2 1 3 13 13 N 1.32934 * 120.81257 * 359.97438 * 10 9 8 14 14 C 1.31479 * 121.75058 * 359.70199 * 13 10 9 15 15 C 1.46508 * 119.99493 * 81.48693 * 4 3 2 16 16 C 1.53035 * 109.44776 * 299.96501 * 15 4 3 17 17 C 1.53196 * 109.31303 * 181.37920 * 16 15 4 18 18 N 1.46926 * 108.77460 * 305.36697 * 17 16 15 19 19 C 1.36941 * 120.63475 * 233.63160 * 18 17 16 20 20 H 1.08004 * 119.99653 * 31.26112 * 19 18 17 21 21 C 1.38804 * 120.00202 * 211.27254 * 19 18 17 22 22 N 1.31618 * 120.00048 * 10.61239 * 21 19 18 23 23 Si 1.86800 * 120.00123 * 190.61188 * 21 19 18 24 24 H 1.48497 * 109.46912 * 89.99869 * 23 21 19 25 25 H 1.48501 * 109.47206 * 209.99803 * 23 21 19 26 26 H 1.48502 * 109.47052 * 330.00117 * 23 21 19 27 27 C 1.46929 * 118.73989 * 53.60526 * 18 17 16 28 28 C 1.53035 * 109.46017 * 60.02840 * 15 4 3 29 29 H 4.40637 * 5.51303 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47208 * 273.24919 * 3 2 1 31 31 H 1.08997 * 109.47193 * 153.25034 * 3 2 1 32 32 H 1.07994 * 120.80551 * 0.03156 * 8 7 5 33 33 H 1.08006 * 120.39630 * 179.97438 * 9 8 7 34 34 H 8.43226 * 107.35250 * 285.67181 * 2 1 3 35 35 H 1.08002 * 119.64635 * 180.31027 * 14 13 10 36 36 H 1.08996 * 109.45857 * 179.97438 * 15 4 3 37 37 H 1.08995 * 109.50342 * 301.32816 * 16 15 4 38 38 H 1.08999 * 109.49953 * 61.43141 * 16 15 4 39 39 H 1.08997 * 109.59127 * 185.58304 * 17 16 15 40 40 H 1.09001 * 109.70463 * 65.21815 * 17 16 15 41 41 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.58833 * 186.60300 * 27 18 17 43 43 H 1.08998 * 109.70145 * 66.24906 * 27 18 17 44 44 H 1.08999 * 109.49877 * 298.57776 * 28 15 4 45 45 H 1.09002 * 109.49809 * 58.67383 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1543 -0.7572 5 6 3.5229 -2.2702 -0.1086 6 8 3.8199 -3.2670 -0.7380 7 6 3.5875 -2.2819 1.3667 8 6 4.5074 -3.1060 2.0310 9 6 4.5311 -3.0841 3.4104 10 6 3.6445 -2.2484 4.0944 11 6 3.6617 -2.2196 5.5259 12 6 3.6761 -2.1956 6.6996 13 7 2.7851 -1.4799 3.4325 14 6 2.7369 -1.4687 2.1187 15 6 3.2019 -1.0962 -2.2195 16 6 1.8011 -0.8501 -2.7845 17 6 1.8692 -0.8244 -4.3147 18 7 2.8693 0.1699 -4.7268 19 6 2.5428 1.1627 -5.6117 20 1 1.5367 1.5545 -5.6365 21 6 3.5049 1.6653 -6.4769 22 7 4.6650 1.0554 -6.5970 23 14 3.1531 3.2074 -7.4707 24 1 3.5803 4.4019 -6.6988 25 1 3.9020 3.1521 -8.7519 26 1 1.6975 3.2940 -7.7515 27 6 4.2264 0.0792 -4.1710 28 6 4.1318 0.0432 -2.6425 29 1 -1.0498 -0.0001 -0.0003 30 1 3.0094 -0.0574 1.0260 31 1 3.0089 0.9185 -0.4625 32 1 5.1810 -3.7424 1.4764 33 1 5.2262 -3.7060 3.9550 34 1 3.6890 -2.1741 7.7493 35 1 2.0285 -0.8272 1.6156 36 1 3.5878 -2.0407 -2.6031 37 1 1.1336 -1.6498 -2.4635 38 1 1.4250 0.1061 -2.4209 39 1 0.8946 -0.5516 -4.7194 40 1 2.1570 -1.8078 -4.6864 41 1 5.3372 1.4064 -7.2019 42 1 4.8071 0.9481 -4.4809 43 1 4.7100 -0.8299 -4.5287 44 1 3.7338 0.9911 -2.2803 45 1 5.1233 -0.1206 -2.2203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500054273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:24 Heat of formation + Delta-G solvation = 174.721112 kcal Electronic energy + Delta-G solvation = -28493.823061 eV Core-core repulsion = 24674.943244 eV Total energy + Delta-G solvation = -3818.879817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27167 -39.56934 -37.52359 -36.04648 -34.32720 -33.22468 -32.88212 -32.35161 -31.18513 -30.06440 -29.49788 -27.50765 -25.87128 -24.56980 -23.98367 -22.22200 -22.13501 -20.21762 -19.88287 -19.32370 -18.30278 -17.79066 -17.07099 -16.72161 -16.36614 -15.93610 -15.49584 -15.01801 -14.80482 -14.49907 -14.25751 -13.80730 -13.74908 -13.62960 -13.47145 -13.30931 -13.04627 -12.67533 -12.38166 -12.10436 -11.69892 -11.53437 -11.29036 -11.17872 -10.97623 -10.79095 -10.66539 -10.50555 -10.30653 -10.23422 -10.19660 -10.13293 -10.05087 -9.82302 -9.71661 -9.55000 -9.15502 -8.68703 -8.44736 -6.65049 -5.80077 -3.28037 0.02156 0.80774 2.18478 2.20989 2.39908 2.64511 2.86076 3.21703 3.36160 3.42858 3.44136 3.49934 3.62097 4.19375 4.26480 4.31185 4.47103 4.47313 4.64246 4.73131 4.92391 5.14190 5.24060 5.30767 5.36905 5.43127 5.48416 5.56749 5.65048 5.66864 5.80808 5.83738 6.06010 6.10486 6.15393 6.29314 6.48372 6.51675 6.59417 6.76120 6.80580 6.95838 7.00530 7.29154 7.35643 7.39956 7.48127 7.66176 7.77501 8.03779 8.45940 9.20500 9.81617 10.39883 11.28238 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.022549 B = 0.002573 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.443088 B =10881.665925 C =11238.689928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.215 4.215 3 C 0.184 3.816 4 N -0.591 5.591 5 C 0.562 3.438 6 O -0.526 6.526 7 C -0.175 4.175 8 C -0.016 4.016 9 C -0.151 4.151 10 C 0.240 3.760 11 C -0.150 4.150 12 C -0.133 4.133 13 N -0.469 5.469 14 C 0.109 3.891 15 C 0.146 3.854 16 C -0.136 4.136 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.905 5.905 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.175 3.825 28 C -0.148 4.148 29 H 0.220 0.780 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.231 0.769 35 H 0.193 0.807 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.254 0.746 42 H 0.093 0.907 43 H 0.021 0.979 44 H 0.058 0.942 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -5.303 23.141 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.216 4.216 3 C 0.061 3.939 4 N -0.321 5.321 5 C 0.350 3.650 6 O -0.403 6.403 7 C -0.180 4.180 8 C -0.042 4.042 9 C -0.171 4.171 10 C 0.105 3.895 11 C -0.151 4.151 12 C -0.153 4.153 13 N -0.177 5.177 14 C -0.049 4.049 15 C 0.045 3.955 16 C -0.176 4.176 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.549 5.549 23 Si 0.735 3.265 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.048 3.952 28 C -0.188 4.188 29 H 0.236 0.764 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.247 0.753 35 H 0.209 0.791 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.171 -5.264 23.070 23.763 hybrid contribution 0.177 0.339 -0.819 0.904 sum -1.994 -4.925 22.251 22.877 Atomic orbital electron populations 1.24981 0.95886 0.98392 0.98944 1.23194 0.94679 1.02103 1.01662 1.19241 0.84115 0.91518 0.98977 1.48165 1.62514 1.13216 1.08253 1.18021 0.77495 0.83245 0.86279 1.90805 1.49249 1.32258 1.67964 1.21210 1.00764 1.00864 0.95195 1.21654 0.95029 0.93993 0.93568 1.22020 1.00350 1.00329 0.94390 1.16797 0.91886 0.92561 0.88233 1.19279 1.02348 1.02436 0.91018 1.24967 0.97411 0.97246 0.95638 1.67882 1.20190 1.20301 1.09370 1.24228 0.96997 0.94802 0.88891 1.21333 0.97330 1.01355 0.75495 1.22403 0.94997 1.01038 0.99205 1.20888 0.93951 0.92700 0.90411 1.44044 1.07381 1.29958 1.50060 1.19171 0.96884 1.11113 1.10983 0.91789 1.25173 0.97440 0.99550 0.97327 1.69966 1.06515 1.39329 1.39091 0.86253 0.77723 0.83048 0.79485 1.21436 1.21691 1.20431 1.20774 0.87244 1.01628 0.85530 1.22622 0.97378 0.96915 1.01873 0.76369 0.86377 0.87207 0.82896 0.83510 0.75255 0.79103 0.88296 0.93031 0.91660 0.92507 0.96218 0.93550 0.88866 0.96081 0.92319 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 19.24 29.55 0.57 -1.22 16 2 C -0.22 -2.63 9.32 -37.12 -0.35 -2.97 16 3 C 0.18 2.21 5.11 -6.83 -0.03 2.18 16 4 N -0.59 -8.67 2.43 -170.55 -0.41 -9.08 16 5 C 0.56 8.52 7.47 -12.41 -0.09 8.43 16 6 O -0.53 -9.63 16.10 5.30 0.09 -9.55 16 7 C -0.18 -2.18 5.61 -104.76 -0.59 -2.77 16 8 C -0.02 -0.17 9.71 -38.93 -0.38 -0.55 16 9 C -0.15 -1.40 9.77 -39.12 -0.38 -1.78 16 10 C 0.24 2.65 6.59 -84.91 -0.56 2.09 16 11 C -0.15 -1.46 13.43 -38.84 -0.52 -1.98 16 12 C -0.13 -0.91 19.25 29.55 0.57 -0.34 16 13 N -0.47 -5.78 10.26 -10.87 -0.11 -5.90 16 14 C 0.11 1.29 8.68 -17.17 -0.15 1.14 16 15 C 0.15 2.54 2.48 -67.89 -0.17 2.37 16 16 C -0.14 -2.41 4.56 -26.61 -0.12 -2.53 16 17 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 18 N -0.59 -14.56 2.99 -172.32 -0.51 -15.07 16 19 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 20 H 0.06 1.70 7.85 -52.48 -0.41 1.29 16 21 C 0.00 0.10 5.05 -17.43 -0.09 0.01 16 22 N -0.90 -25.89 11.04 55.49 0.61 -25.27 16 23 Si 0.90 21.43 29.57 -169.99 -5.03 16.41 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.17 4.08 5.25 -3.71 -0.02 4.06 16 28 C -0.15 -2.73 5.28 -26.61 -0.14 -2.87 16 29 H 0.22 1.66 7.80 -54.10 -0.42 1.24 16 30 H 0.12 1.23 4.00 -52.12 -0.21 1.02 16 31 H 0.11 1.30 6.52 -51.93 -0.34 0.96 16 32 H 0.15 1.44 7.97 -52.49 -0.42 1.02 16 33 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.23 0.54 7.80 -54.09 -0.42 0.12 16 35 H 0.19 2.14 3.10 -52.49 -0.16 1.98 16 36 H 0.10 1.94 6.91 -51.93 -0.36 1.58 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 1.16 6.56 -51.93 -0.34 0.82 16 39 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.09 2.43 6.09 -51.93 -0.32 2.11 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.06 6.80 -51.93 -0.35 0.71 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -32.80 374.92 -7.75 -40.55 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.41 Total: 2.85 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.62 Total: -0.59 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.43 Total: -55.32 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.80 -7.75 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500054273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.272 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds