Wall clock time and date at job start Tue Mar 31 2020 19:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47215 * 33.24296 * 3 2 1 5 5 C 1.34772 * 120.00774 * 261.48884 * 4 3 2 6 6 O 1.21573 * 120.00546 * 173.72328 * 5 4 3 7 7 C 1.47680 * 119.99388 * 353.71540 * 5 4 3 8 8 C 1.40238 * 120.43592 * 209.46728 * 7 5 4 9 9 C 1.37979 * 118.39298 * 180.02562 * 8 7 5 10 10 C 1.39727 * 119.20679 * 0.02562 * 9 8 7 11 11 C 1.43191 * 119.59162 * 179.97438 * 10 9 8 12 12 C 7.48104 * 109.53901 * 288.14500 * 2 1 3 13 13 N 1.32934 * 120.81257 * 359.97438 * 10 9 8 14 14 C 1.31479 * 121.75058 * 359.70199 * 13 10 9 15 15 C 1.46508 * 119.99493 * 81.48693 * 4 3 2 16 16 C 1.53035 * 109.44776 * 299.96501 * 15 4 3 17 17 C 1.53196 * 109.31303 * 181.37920 * 16 15 4 18 18 N 1.46926 * 108.77460 * 305.36697 * 17 16 15 19 19 C 1.36941 * 120.63475 * 233.63160 * 18 17 16 20 20 H 1.08004 * 119.99653 * 31.26112 * 19 18 17 21 21 C 1.38804 * 120.00202 * 211.27254 * 19 18 17 22 22 N 1.31618 * 120.00048 * 10.61239 * 21 19 18 23 23 Si 1.86800 * 120.00123 * 190.61188 * 21 19 18 24 24 H 1.48497 * 109.46912 * 89.99869 * 23 21 19 25 25 H 1.48501 * 109.47206 * 209.99803 * 23 21 19 26 26 H 1.48502 * 109.47052 * 330.00117 * 23 21 19 27 27 C 1.46929 * 118.73989 * 53.60526 * 18 17 16 28 28 C 1.53035 * 109.46017 * 60.02840 * 15 4 3 29 29 H 4.40637 * 5.51303 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47208 * 273.24919 * 3 2 1 31 31 H 1.08997 * 109.47193 * 153.25034 * 3 2 1 32 32 H 1.07994 * 120.80551 * 0.03156 * 8 7 5 33 33 H 1.08006 * 120.39630 * 179.97438 * 9 8 7 34 34 H 8.43226 * 107.35250 * 285.67181 * 2 1 3 35 35 H 1.08002 * 119.64635 * 180.31027 * 14 13 10 36 36 H 1.08996 * 109.45857 * 179.97438 * 15 4 3 37 37 H 1.08995 * 109.50342 * 301.32816 * 16 15 4 38 38 H 1.08999 * 109.49953 * 61.43141 * 16 15 4 39 39 H 1.08997 * 109.59127 * 185.58304 * 17 16 15 40 40 H 1.09001 * 109.70463 * 65.21815 * 17 16 15 41 41 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.58833 * 186.60300 * 27 18 17 43 43 H 1.08998 * 109.70145 * 66.24906 * 27 18 17 44 44 H 1.08999 * 109.49877 * 298.57776 * 28 15 4 45 45 H 1.09002 * 109.49809 * 58.67383 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1543 -0.7572 5 6 3.5229 -2.2702 -0.1086 6 8 3.8199 -3.2670 -0.7380 7 6 3.5875 -2.2819 1.3667 8 6 4.5074 -3.1060 2.0310 9 6 4.5311 -3.0841 3.4104 10 6 3.6445 -2.2484 4.0944 11 6 3.6617 -2.2196 5.5259 12 6 3.6761 -2.1956 6.6996 13 7 2.7851 -1.4799 3.4325 14 6 2.7369 -1.4687 2.1187 15 6 3.2019 -1.0962 -2.2195 16 6 1.8011 -0.8501 -2.7845 17 6 1.8692 -0.8244 -4.3147 18 7 2.8693 0.1699 -4.7268 19 6 2.5428 1.1627 -5.6117 20 1 1.5367 1.5545 -5.6365 21 6 3.5049 1.6653 -6.4769 22 7 4.6650 1.0554 -6.5970 23 14 3.1531 3.2074 -7.4707 24 1 3.5803 4.4019 -6.6988 25 1 3.9020 3.1521 -8.7519 26 1 1.6975 3.2940 -7.7515 27 6 4.2264 0.0792 -4.1710 28 6 4.1318 0.0432 -2.6425 29 1 -1.0498 -0.0001 -0.0003 30 1 3.0094 -0.0574 1.0260 31 1 3.0089 0.9185 -0.4625 32 1 5.1810 -3.7424 1.4764 33 1 5.2262 -3.7060 3.9550 34 1 3.6890 -2.1741 7.7493 35 1 2.0285 -0.8272 1.6156 36 1 3.5878 -2.0407 -2.6031 37 1 1.1336 -1.6498 -2.4635 38 1 1.4250 0.1061 -2.4209 39 1 0.8946 -0.5516 -4.7194 40 1 2.1570 -1.8078 -4.6864 41 1 5.3372 1.4064 -7.2019 42 1 4.8071 0.9481 -4.4809 43 1 4.7100 -0.8299 -4.5287 44 1 3.7338 0.9911 -2.2803 45 1 5.1233 -0.1206 -2.2203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500054273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:23 Heat of formation + Delta-G solvation = 155.916959 kcal Electronic energy + Delta-G solvation = -28494.638471 eV Core-core repulsion = 24674.943244 eV Total energy + Delta-G solvation = -3819.695226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27408 -40.65469 -39.02772 -37.37842 -35.27465 -34.50998 -33.77818 -33.60347 -32.37128 -31.65596 -31.03081 -28.54677 -27.31890 -25.93963 -24.82238 -23.90653 -23.70212 -21.44314 -20.95326 -20.44378 -19.41235 -18.82691 -18.57974 -17.97424 -17.17676 -17.08431 -16.84028 -16.41992 -15.91006 -15.70684 -15.40289 -15.33161 -15.11485 -14.81572 -14.73873 -14.48307 -14.31578 -14.24649 -13.95833 -13.27411 -13.04468 -12.97685 -12.70366 -12.64197 -12.34629 -12.20766 -12.04228 -11.96346 -11.89866 -11.59048 -11.48326 -11.44353 -11.25376 -11.15756 -10.99656 -10.65709 -10.57937 -10.03048 -9.86003 -8.66336 -7.86912 -5.38394 -0.81267 0.00283 1.26599 1.38005 1.48684 1.48799 1.58152 1.60492 1.76796 1.94455 2.21639 2.50876 2.81580 2.87749 3.24967 3.29867 3.39560 3.51122 3.64231 3.64968 3.81053 3.89063 3.99612 4.00351 4.05094 4.28341 4.36904 4.44341 4.45200 4.61670 4.63417 4.72543 4.82219 4.85544 4.96972 4.99724 5.01149 5.05141 5.11859 5.28987 5.35405 5.40393 5.47287 5.63997 5.70888 6.14701 6.40988 6.43846 6.58240 6.61584 6.85707 7.15046 7.82861 8.37132 9.19566 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.022549 B = 0.002573 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.443088 B =10881.665925 C =11238.689928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.251 4.251 3 C 0.184 3.816 4 N -0.588 5.588 5 C 0.564 3.436 6 O -0.566 6.566 7 C -0.192 4.192 8 C -0.016 4.016 9 C -0.142 4.142 10 C 0.237 3.763 11 C -0.218 4.218 12 C -0.081 4.081 13 N -0.491 5.491 14 C 0.113 3.887 15 C 0.156 3.844 16 C -0.117 4.117 17 C 0.145 3.855 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.283 1.283 25 H -0.297 1.297 26 H -0.268 1.268 27 C 0.182 3.818 28 C -0.130 4.130 29 H 0.249 0.751 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.161 0.839 33 H 0.178 0.822 34 H 0.273 0.727 35 H 0.197 0.803 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.009 0.991 41 H 0.250 0.750 42 H 0.064 0.936 43 H -0.007 1.007 44 H 0.068 0.932 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.028 -4.803 26.378 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.252 4.252 3 C 0.063 3.937 4 N -0.318 5.318 5 C 0.353 3.647 6 O -0.445 6.445 7 C -0.197 4.197 8 C -0.042 4.042 9 C -0.161 4.161 10 C 0.102 3.898 11 C -0.219 4.219 12 C -0.100 4.100 13 N -0.199 5.199 14 C -0.045 4.045 15 C 0.054 3.946 16 C -0.157 4.157 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.390 4.390 20 H 0.086 0.914 21 C -0.245 4.245 22 N -0.583 5.583 23 Si 0.799 3.201 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.193 1.193 27 C 0.056 3.944 28 C -0.170 4.170 29 H 0.265 0.735 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.179 0.821 33 H 0.195 0.805 34 H 0.289 0.711 35 H 0.213 0.787 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.027 0.973 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.011 0.989 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.298 -4.754 26.350 26.977 hybrid contribution 0.480 0.119 -1.643 1.716 sum -2.819 -4.634 24.706 25.295 Atomic orbital electron populations 1.25775 0.96704 0.96671 0.97310 1.23320 0.95059 1.03653 1.03188 1.19381 0.84595 0.90241 0.99488 1.48019 1.62534 1.14166 1.07038 1.18398 0.76380 0.82541 0.87377 1.90779 1.51087 1.33650 1.69029 1.20992 1.02616 1.02814 0.93286 1.21839 0.94589 0.93462 0.94301 1.22291 1.00206 0.99936 0.93706 1.17195 0.91316 0.91916 0.89368 1.19553 1.05389 1.05479 0.91438 1.25999 0.93958 0.93747 0.96297 1.67908 1.21280 1.21389 1.09355 1.24201 0.96796 0.94621 0.88900 1.20926 0.96692 0.99483 0.77538 1.22161 0.95360 1.01743 0.96412 1.20996 0.93156 0.91249 0.92760 1.44277 1.08147 1.30479 1.50214 1.19495 0.97020 1.11490 1.11039 0.91445 1.25939 0.97377 1.02506 0.98681 1.70142 1.07367 1.40855 1.39926 0.85220 0.77840 0.79514 0.77562 1.20953 1.22324 1.19304 1.20531 0.86463 0.98822 0.88621 1.22345 0.98617 0.97943 0.98121 0.73501 0.84714 0.87011 0.82130 0.80470 0.71123 0.78740 0.90730 0.91813 0.91054 0.92058 0.97330 0.94058 0.91806 0.98896 0.91354 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 19.24 74.32 1.43 -1.44 16 2 C -0.25 -5.74 9.32 31.12 0.29 -5.45 16 3 C 0.18 4.27 5.11 84.57 0.43 4.70 16 4 N -0.59 -17.16 2.43 -811.77 -1.97 -19.13 16 5 C 0.56 17.22 7.47 86.74 0.65 17.87 16 6 O -0.57 -21.29 16.10 -3.95 -0.06 -21.35 16 7 C -0.19 -4.71 5.61 -19.95 -0.11 -4.82 16 8 C -0.02 -0.33 9.71 22.69 0.22 -0.10 16 9 C -0.14 -2.39 9.77 22.57 0.22 -2.17 16 10 C 0.24 4.89 6.59 40.58 0.27 5.16 16 11 C -0.22 -3.74 13.43 30.01 0.40 -3.33 16 12 C -0.08 -0.80 19.25 74.32 1.43 0.63 16 13 N -0.49 -11.62 10.26 -188.30 -1.93 -13.56 16 14 C 0.11 2.58 8.68 85.09 0.74 3.32 16 15 C 0.16 5.50 2.48 45.01 0.11 5.61 16 16 C -0.12 -4.09 4.56 30.67 0.14 -3.95 16 17 C 0.14 6.16 6.52 86.36 0.56 6.72 16 18 N -0.61 -30.60 2.99 -699.08 -2.09 -32.68 16 19 C -0.26 -14.18 9.58 84.03 0.81 -13.37 16 20 H 0.07 3.56 7.85 -2.91 -0.02 3.54 16 21 C -0.05 -2.76 5.05 84.86 0.43 -2.33 16 22 N -0.94 -55.38 11.04 21.65 0.24 -55.14 16 23 Si 0.97 44.53 29.57 68.60 2.03 46.55 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.18 8.86 5.25 86.36 0.45 9.31 16 28 C -0.13 -4.89 5.28 30.67 0.16 -4.73 16 29 H 0.25 2.95 7.80 -4.43 -0.03 2.92 16 30 H 0.14 2.68 4.00 -2.57 -0.01 2.67 16 31 H 0.11 2.52 6.52 -2.39 -0.02 2.51 16 32 H 0.16 2.94 7.97 -2.91 -0.02 2.92 16 33 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.27 -0.20 7.80 -4.42 -0.03 -0.24 16 35 H 0.20 4.19 3.10 -2.91 -0.01 4.18 16 36 H 0.07 3.03 6.91 -2.39 -0.02 3.02 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 2.44 6.56 -2.39 -0.02 2.42 16 39 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 42 H 0.06 3.48 6.09 -2.39 -0.01 3.46 16 43 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.07 2.44 6.80 -2.39 -0.02 2.43 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -73.67 374.92 5.86 -67.80 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.02 Total: 15.89 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 8.63 Total: 11.62 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -5.75 Total: -120.51 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.06 Total: -21.35 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -73.67 5.86 -67.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500054273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.718 kcal (2) G-P(sol) polarization free energy of solvation -73.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds