Wall clock time and date at job start Tue Mar 31 2020 21:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.49623 * 2 1 4 4 C 1.53039 * 109.51982 * 239.92418 * 2 1 3 5 5 C 1.53042 * 109.54113 * 301.39370 * 4 2 1 6 6 C 1.53190 * 109.30958 * 298.64243 * 5 4 2 7 7 N 1.46921 * 108.77964 * 54.63057 * 6 5 4 8 8 C 1.34784 * 120.62950 * 126.39043 * 7 6 5 9 9 O 1.21617 * 119.99796 * 185.71785 * 8 7 6 10 10 C 1.47251 * 119.99838 * 5.71986 * 8 7 6 11 11 N 1.30570 * 125.53994 * 216.94044 * 10 8 7 12 12 C 1.30700 * 115.90439 * 180.02562 * 11 10 8 13 13 C 1.34232 * 115.78887 * 359.97438 * 12 11 10 14 14 S 1.71077 * 109.08830 * 359.73086 * 13 12 11 15 15 C 1.46919 * 118.73930 * 306.38973 * 7 6 5 16 16 H 1.08998 * 109.59124 * 293.82061 * 15 7 6 17 17 C 1.53002 * 109.58802 * 173.39384 * 15 7 6 18 18 C 1.53002 * 109.47515 * 182.40170 * 17 15 7 19 19 C 1.53002 * 109.47260 * 178.16247 * 18 17 15 20 20 N 1.46498 * 109.46984 * 180.02562 * 19 18 17 21 21 C 1.36937 * 120.00027 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99861 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00325 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00316 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99697 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47312 * 90.00260 * 25 23 21 27 27 H 1.48505 * 109.47148 * 210.00280 * 25 23 21 28 28 H 1.48500 * 109.47494 * 330.00331 * 25 23 21 29 29 H 1.09004 * 109.46889 * 299.93258 * 1 2 3 30 30 H 1.08996 * 109.46994 * 59.93265 * 1 2 3 31 31 H 1.08999 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46264 * 61.42108 * 4 2 1 33 33 H 1.09010 * 109.45464 * 181.37651 * 4 2 1 34 34 H 1.08995 * 109.49352 * 58.58889 * 5 4 2 35 35 H 1.08994 * 109.49750 * 178.68649 * 5 4 2 36 36 H 1.09000 * 109.58699 * 174.42143 * 6 5 4 37 37 H 1.09008 * 109.58768 * 294.69686 * 6 5 4 38 38 H 1.08005 * 122.10247 * 180.02562 * 12 11 10 39 39 H 1.07997 * 125.45547 * 180.02562 * 13 12 11 40 40 H 1.09004 * 109.47360 * 302.40331 * 17 15 7 41 41 H 1.09006 * 109.47273 * 62.39713 * 17 15 7 42 42 H 1.09002 * 109.46852 * 298.16539 * 18 17 15 43 43 H 1.08998 * 109.46738 * 58.16287 * 18 17 15 44 44 H 1.09006 * 109.46710 * 299.99963 * 19 18 17 45 45 H 1.09000 * 109.46904 * 59.99891 * 19 18 17 46 46 H 0.97000 * 119.99963 * 359.97438 * 20 19 18 47 47 H 0.97000 * 119.99964 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7229 -1.2482 5 6 1.5044 -2.1558 -1.2660 6 6 2.0154 -2.9037 -0.0306 7 7 1.6523 -2.1380 1.1696 8 6 0.9751 -2.7221 2.1780 9 8 0.5897 -2.0545 3.1186 10 6 0.7021 -4.1686 2.1408 11 7 -0.3903 -4.7459 2.5630 12 6 -0.4331 -6.0464 2.4401 13 6 0.6525 -6.6174 1.8950 14 16 1.7924 -5.4004 1.5125 15 6 2.0414 -0.7235 1.2497 16 1 3.1275 -0.6455 1.2984 17 6 1.4224 -0.0911 2.4978 18 6 1.7797 1.3958 2.5469 19 6 1.1227 2.0381 3.7704 20 7 1.4644 3.4619 3.8170 21 6 0.9866 4.2478 4.8315 22 1 0.3576 3.8180 5.5971 23 6 1.3108 5.5968 4.8761 24 7 0.8512 6.3523 5.8509 25 14 2.3993 6.3399 3.5523 26 1 1.5538 6.8347 2.4363 27 1 3.1738 7.4701 4.1252 28 1 3.3357 5.3059 3.0432 29 1 -0.3633 0.5128 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6994 -0.1958 -2.1389 33 1 3.1313 -0.7437 -1.2349 34 1 0.4146 -2.1360 -1.2543 35 1 1.8499 -2.6627 -2.1669 36 1 1.5573 -3.8918 0.0139 37 1 3.0992 -3.0058 -0.0875 38 1 -1.2885 -6.6250 2.7564 39 1 0.7833 -7.6752 1.7209 40 1 0.3387 -0.2034 2.4626 41 1 1.8103 -0.5876 3.3873 42 1 2.8618 1.5073 2.6150 43 1 1.4201 1.8859 1.6421 44 1 0.0405 1.9265 3.7022 45 1 1.4823 1.5479 4.6751 46 1 2.0296 3.8478 3.1296 47 1 1.0780 7.2949 5.8822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565987310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:53 Heat of formation + Delta-G solvation = 15.824525 kcal Electronic energy + Delta-G solvation = -27622.263537 eV Core-core repulsion = 23931.937398 eV Total energy + Delta-G solvation = -3690.326139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.04065 -40.57724 -38.76659 -37.46495 -35.52612 -34.44726 -33.41694 -31.56924 -31.33239 -28.90886 -27.47426 -27.14255 -25.53808 -24.59356 -23.49383 -22.47409 -22.13336 -20.54188 -20.01809 -19.62482 -18.99737 -17.69254 -17.29880 -16.97529 -16.56664 -16.52042 -16.23550 -15.77224 -15.53608 -15.30861 -15.10525 -14.87919 -14.83325 -14.59152 -14.36308 -14.06501 -13.90267 -13.75999 -13.30825 -13.02756 -12.91978 -12.79924 -12.62263 -12.48230 -12.19233 -12.10870 -11.97481 -11.88701 -11.74217 -11.63732 -11.37550 -11.22515 -11.05946 -10.97848 -10.63363 -10.25975 -9.81623 -9.61145 -9.33698 -8.04860 -5.39944 -0.75392 0.05305 0.61511 1.31154 1.36411 1.42579 1.50183 1.60368 2.08744 2.48027 3.07803 3.25404 3.53928 3.73311 3.78592 3.83525 3.91259 4.02863 4.14569 4.20017 4.23518 4.28906 4.36058 4.43792 4.51428 4.57784 4.63032 4.67583 4.74877 4.82056 4.88705 4.95014 5.01700 5.02716 5.07260 5.14293 5.24163 5.25931 5.31632 5.42794 5.46507 5.50975 5.71053 5.71887 6.14826 6.19230 6.59418 6.95894 7.05098 7.79436 8.03722 9.17134 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.002703 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.017819 B =10357.993461 C =11399.229107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.110 4.110 5 C -0.132 4.132 6 C 0.086 3.914 7 N -0.589 5.589 8 C 0.584 3.416 9 O -0.539 6.539 10 C -0.049 4.049 11 N -0.449 5.449 12 C 0.004 3.996 13 C -0.257 4.257 14 S 0.265 5.735 15 C 0.159 3.841 16 H 0.099 0.901 17 C -0.094 4.094 18 C -0.119 4.119 19 C 0.158 3.842 20 N -0.756 5.756 21 C -0.245 4.245 22 H 0.046 0.954 23 C -0.068 4.068 24 N -0.986 5.986 25 Si 0.966 3.034 26 H -0.274 1.274 27 H -0.292 1.292 28 H -0.246 1.246 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.196 0.804 39 H 0.223 0.777 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.009 0.991 45 H 0.010 0.990 46 H 0.369 0.631 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -32.608 -23.627 40.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.109 0.891 4 C -0.148 4.148 5 C -0.170 4.170 6 C -0.036 4.036 7 N -0.322 5.322 8 C 0.368 3.632 9 O -0.416 6.416 10 C -0.323 4.323 11 N -0.166 5.166 12 C -0.152 4.152 13 C -0.397 4.397 14 S 0.519 5.481 15 C 0.057 3.943 16 H 0.117 0.883 17 C -0.132 4.132 18 C -0.157 4.157 19 C 0.032 3.968 20 N -0.402 5.402 21 C -0.376 4.376 22 H 0.064 0.936 23 C -0.259 4.259 24 N -0.636 5.636 25 Si 0.792 3.208 26 H -0.200 1.200 27 H -0.218 1.218 28 H -0.171 1.171 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.212 0.788 39 H 0.240 0.760 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.203 0.797 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.689 -31.881 -23.165 40.151 hybrid contribution -1.048 0.314 0.766 1.335 sum 6.641 -31.567 -22.399 39.272 Atomic orbital electron populations 1.21857 0.95961 1.01124 1.01336 1.21613 0.95802 1.00394 0.94570 0.89075 1.21565 1.01577 0.95056 0.96573 1.21950 1.01145 0.96260 0.97615 1.22454 1.02763 0.94974 0.83406 1.47975 1.55003 1.11699 1.17545 1.17238 0.78517 0.84373 0.83063 1.90961 1.51577 1.62582 1.36465 1.27447 0.96488 0.99377 1.09019 1.66643 1.23250 1.11697 1.15035 1.22186 1.01747 0.88092 1.03149 1.27431 0.98198 1.08333 1.05732 1.83612 1.19041 0.94650 1.50773 1.21446 0.99516 0.78074 0.95312 0.88340 1.21860 1.01361 0.92845 0.97156 1.21822 1.00820 0.95904 0.97199 1.20672 0.96491 0.82772 0.96899 1.42678 1.61212 1.06407 1.29928 1.19049 1.24310 0.91392 1.02812 0.93614 1.25668 1.02626 0.96469 1.01166 1.69916 1.51452 1.06471 1.35784 0.85248 0.78972 0.78064 0.78532 1.19966 1.21830 1.17066 0.94489 0.91712 0.93424 0.90440 0.89771 0.92386 0.87488 0.89485 0.87519 0.78750 0.76048 0.92125 0.92340 0.90929 0.90626 0.97285 0.97219 0.79719 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.18 71.98 0.59 -2.57 16 2 C -0.10 -1.82 2.23 -10.72 -0.02 -1.84 16 3 H 0.09 1.61 6.69 -2.39 -0.02 1.59 16 4 C -0.11 -1.13 5.43 30.62 0.17 -0.96 16 5 C -0.13 -1.15 5.74 30.67 0.18 -0.97 16 6 C 0.09 0.88 5.59 86.36 0.48 1.36 16 7 N -0.59 -11.35 2.41 -799.09 -1.93 -13.28 16 8 C 0.58 15.67 7.59 86.61 0.66 16.32 16 9 O -0.54 -19.76 12.50 -4.09 -0.05 -19.81 16 10 C -0.05 -1.09 6.56 87.25 0.57 -0.52 16 11 N -0.45 -11.21 10.65 -190.31 -2.03 -13.23 16 12 C 0.00 0.06 11.24 83.95 0.94 1.00 16 13 C -0.26 -2.26 11.09 66.91 0.74 -1.52 16 14 S 0.27 2.73 19.89 -56.49 -1.12 1.60 16 15 C 0.16 3.28 2.74 44.98 0.12 3.40 16 16 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 17 C -0.09 -2.84 2.61 30.60 0.08 -2.76 16 18 C -0.12 -3.85 4.92 30.60 0.15 -3.70 16 19 C 0.16 7.05 6.26 86.38 0.54 7.59 16 20 N -0.76 -38.99 5.41 -343.44 -1.86 -40.85 16 21 C -0.24 -15.29 10.47 84.03 0.88 -14.41 16 22 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 23 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 24 N -0.99 -66.36 13.97 21.65 0.30 -66.06 16 25 Si 0.97 47.00 27.73 68.60 1.90 48.90 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 27 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 28 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 29 H 0.04 1.02 6.23 -2.39 -0.01 1.00 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.07 5.97 -2.39 -0.01 1.06 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.06 0.72 6.34 -2.39 -0.02 0.70 16 35 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.09 0.79 4.29 -15.05 -0.06 0.72 16 37 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.22 0.12 8.06 -2.91 -0.02 0.10 16 40 H 0.06 2.15 5.17 -2.38 -0.01 2.14 16 41 H 0.06 2.04 6.64 -2.38 -0.02 2.02 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.08 2.25 6.31 -2.39 -0.02 2.23 16 44 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 45 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.37 17.43 5.53 -92.71 -0.51 16.92 16 47 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 Total: -1.00 -86.45 368.41 2.13 -84.32 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.37 Total: 21.77 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 6.55 Total: -3.36 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -5.51 Total: -133.42 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.90 Total: 48.90 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.12 Total: 1.60 kcal Total: -86.45 2.13 -84.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565987310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.144 kcal (2) G-P(sol) polarization free energy of solvation -86.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds