Wall clock time and date at job start Tue Mar 31 2020 19:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47612 * 2 1 4 4 H 1.08999 * 109.46752 * 56.43777 * 3 2 1 5 5 C 1.52995 * 109.47549 * 176.43743 * 3 2 1 6 6 N 1.46498 * 109.47328 * 174.99697 * 5 3 2 7 7 C 1.34774 * 120.00230 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99653 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00286 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.47031 * 179.97438 * 9 7 6 11 11 C 1.76206 * 99.99945 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99613 * 0.02562 * 11 10 9 13 13 C 1.38794 * 120.00023 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00054 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00004 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46992 * 59.99959 * 15 13 11 17 17 H 1.48493 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46932 * 300.00305 * 15 13 11 19 19 N 1.46898 * 109.47231 * 296.44367 * 3 2 1 20 20 C 1.46904 * 110.99857 * 294.29243 * 19 3 2 21 21 C 1.50699 * 109.47080 * 174.08652 * 20 19 3 22 22 C 1.38223 * 120.41394 * 256.62649 * 21 20 19 23 23 N 1.31864 * 120.75875 * 180.26500 * 22 21 20 24 24 C 1.31876 * 121.72810 * 359.74913 * 23 22 21 25 25 C 1.38185 * 120.76426 * 359.96944 * 24 23 22 26 26 C 1.38632 * 120.42313 * 76.36619 * 21 20 19 27 27 C 1.50696 * 120.78771 * 0.02562 * 26 21 20 28 28 H 1.09003 * 109.47216 * 65.19940 * 1 2 3 29 29 H 1.09004 * 109.47237 * 185.19623 * 1 2 3 30 30 H 1.09000 * 109.47467 * 305.19392 * 1 2 3 31 31 H 1.09001 * 109.47089 * 239.99799 * 2 1 3 32 32 H 1.08997 * 109.46975 * 120.00697 * 2 1 3 33 33 H 1.08997 * 109.47540 * 295.00846 * 5 3 2 34 34 H 1.09007 * 109.47035 * 55.00445 * 5 3 2 35 35 H 0.96997 * 119.99859 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.46799 * 299.99929 * 9 7 6 37 37 H 1.09000 * 109.46924 * 60.00155 * 9 7 6 38 38 H 0.97000 * 119.99697 * 180.02562 * 14 13 11 39 39 H 1.00896 * 111.00356 * 170.33279 * 19 3 2 40 40 H 1.08998 * 109.47168 * 54.07773 * 20 19 3 41 41 H 1.09008 * 109.46560 * 294.08396 * 20 19 3 42 42 H 1.08003 * 119.62650 * 0.02562 * 22 21 20 43 43 H 1.07995 * 119.62033 * 179.97438 * 24 23 22 44 44 H 1.08007 * 120.41656 * 180.02562 * 25 24 23 45 45 H 1.09007 * 109.47173 * 270.91449 * 27 26 21 46 46 H 1.08999 * 109.47481 * 150.91728 * 27 26 21 47 47 H 1.08998 * 109.47186 * 30.91160 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6255 1.9743 0.8563 5 6 3.5674 1.4433 0.0896 6 7 4.0628 2.8167 -0.0305 7 6 5.3870 3.0623 0.0201 8 8 6.1686 2.1461 0.1646 9 6 5.8967 4.4752 -0.1029 10 16 7.7035 4.4761 0.0030 11 6 8.0190 6.2015 -0.1659 12 1 7.1970 6.8912 -0.2887 13 6 9.3237 6.6742 -0.1402 14 7 10.3255 5.8336 0.0099 15 14 9.6581 8.5033 -0.3186 16 1 8.9883 9.2388 0.7839 17 1 11.1217 8.7470 -0.2593 18 1 9.1301 8.9781 -1.6228 19 7 1.6219 2.1097 -1.2401 20 6 2.2709 1.5021 -2.4095 21 6 1.7108 2.1123 -3.6684 22 6 0.7946 1.4173 -4.4353 23 7 0.3040 1.9426 -5.5409 24 6 0.6592 3.1432 -5.9552 25 6 1.5662 3.8991 -5.2372 26 6 2.1038 3.3799 -4.0692 27 6 3.0964 4.1722 -3.2580 28 1 -0.3634 0.4311 -0.9329 29 1 -0.3634 -1.0235 0.0931 30 1 -0.3634 0.5923 0.8398 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 3.8753 1.0285 1.0494 34 1 3.9790 0.8368 -0.7172 35 1 3.4378 3.5493 -0.1464 36 1 5.5883 4.8904 -1.0624 37 1 5.4855 5.0813 0.7044 38 1 11.2373 6.1640 0.0282 39 1 1.8072 3.1006 -1.1978 40 1 2.0839 0.4282 -2.4118 41 1 3.3448 1.6838 -2.3642 42 1 0.4797 0.4311 -4.1277 43 1 0.2363 3.5402 -6.8661 44 1 1.8528 4.8818 -5.5815 45 1 2.5662 4.7612 -2.5095 46 1 3.6542 4.8384 -3.9162 47 1 3.7866 3.4902 -2.7616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567951912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:05 Heat of formation + Delta-G solvation = -13.849417 kcal Electronic energy + Delta-G solvation = -26826.334136 eV Core-core repulsion = 23134.721238 eV Total energy + Delta-G solvation = -3691.612897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69679 -39.60998 -38.00903 -34.71542 -33.90443 -32.87972 -32.48026 -31.15284 -29.88070 -28.34095 -27.61214 -25.83154 -25.50458 -23.43137 -22.98602 -21.89281 -20.44225 -20.04445 -17.97737 -17.38894 -16.86145 -16.50285 -16.39916 -16.06954 -15.58642 -15.06582 -14.89507 -14.85008 -14.29319 -14.14437 -14.02549 -13.84135 -13.56504 -13.30751 -13.14603 -13.00807 -12.92311 -12.83172 -12.65365 -12.35563 -12.26205 -11.75205 -11.62969 -11.46189 -11.19888 -11.10091 -11.08151 -10.94858 -10.81507 -9.88643 -9.68745 -9.64593 -9.52035 -9.28070 -9.12004 -9.03096 -8.74863 -8.30730 -6.56374 -6.26618 -3.97995 0.88180 1.04014 2.91935 2.98263 3.19437 3.23192 3.25898 3.47782 3.61662 3.95577 4.15345 4.24494 4.39395 4.42401 4.48079 4.63221 4.68451 4.76542 4.85286 5.04043 5.08548 5.09554 5.14339 5.20307 5.24695 5.27326 5.37513 5.40569 5.48028 5.53253 5.57777 5.60367 5.73586 5.75090 5.78259 5.79561 5.89344 5.93926 6.03812 6.10686 6.13131 6.41912 6.48930 6.61503 6.94052 7.51967 7.54409 7.77011 8.29586 8.48755 9.18603 10.80709 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.002868 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.216900 B = 9758.923093 C =11661.066990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.092 0.908 5 C 0.084 3.916 6 N -0.741 5.741 7 C 0.532 3.468 8 O -0.513 6.513 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.274 1.274 19 N -0.670 5.670 20 C 0.092 3.908 21 C -0.130 4.130 22 C 0.116 3.884 23 N -0.491 5.491 24 C 0.097 3.903 25 C -0.173 4.173 26 C -0.031 4.031 27 C -0.128 4.128 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.339 0.661 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.134 0.866 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.353 -7.223 -5.315 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.110 0.890 5 C -0.042 4.042 6 N -0.396 5.396 7 C 0.318 3.682 8 O -0.387 6.387 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.301 5.301 20 C -0.037 4.037 21 C -0.132 4.132 22 C -0.041 4.041 23 N -0.200 5.200 24 C -0.060 4.060 25 C -0.193 4.193 26 C -0.040 4.040 27 C -0.185 4.185 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.226 0.774 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.158 0.842 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.170 0.830 43 H 0.170 0.830 44 H 0.152 0.848 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.010 -9.647 -5.606 24.676 hybrid contribution 0.592 3.513 0.231 3.571 sum -21.417 -6.133 -5.375 22.917 Atomic orbital electron populations 1.21619 0.94717 1.00814 1.02655 1.21514 0.97058 0.94277 1.02346 1.21963 0.91541 0.97001 0.92902 0.89015 1.22055 0.95005 0.84208 1.02971 1.46022 1.07576 1.08699 1.77345 1.20327 0.81365 0.91171 0.75371 1.90718 1.55195 1.46128 1.46628 1.23540 1.07106 0.95080 1.04757 1.85432 0.91453 1.10824 1.95446 1.22813 0.95221 0.92240 1.58266 0.90988 1.24988 0.95054 0.98968 0.94502 1.70002 0.99362 1.34641 1.46224 0.86229 0.77431 0.83036 0.78850 1.19912 1.20777 1.19924 1.60704 1.60785 1.07433 1.01177 1.20900 0.96645 0.99398 0.86771 1.20642 0.99326 0.95164 0.98079 1.22612 0.92133 0.99476 0.89927 1.67687 1.25000 1.12679 1.14650 1.22716 0.94248 0.90080 0.98946 1.22055 0.99456 1.01713 0.96100 1.20243 0.95361 0.93777 0.94588 1.20979 0.97405 1.00034 1.00060 0.91615 0.93372 0.93035 0.91588 0.91326 0.91026 0.91278 0.77391 0.89354 0.89248 0.92074 0.84203 0.89430 0.92716 0.83008 0.82961 0.84822 0.90349 0.90422 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.72 37.16 0.36 -0.56 16 2 C -0.11 -0.76 5.30 -26.74 -0.14 -0.90 16 3 C 0.08 0.56 2.72 -67.72 -0.18 0.37 16 4 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 5 C 0.08 0.85 4.47 -4.05 -0.02 0.83 16 6 N -0.74 -8.59 5.29 -60.30 -0.32 -8.91 16 7 C 0.53 9.18 7.85 -10.99 -0.09 9.10 16 8 O -0.51 -11.13 15.86 5.55 0.09 -11.05 16 9 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 10 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 11 C -0.54 -14.92 9.50 30.94 0.29 -14.62 16 12 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.77 13.22 55.49 0.73 -25.03 16 15 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 N -0.67 -4.93 5.77 -107.99 -0.62 -5.55 16 20 C 0.09 0.76 4.34 -4.97 -0.02 0.74 16 21 C -0.13 -1.21 5.46 -104.48 -0.57 -1.78 16 22 C 0.12 1.14 10.83 -17.54 -0.19 0.95 16 23 N -0.49 -5.39 10.36 -13.25 -0.14 -5.53 16 24 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 25 C -0.17 -1.55 9.81 -39.44 -0.39 -1.93 16 26 C -0.03 -0.29 5.92 -104.32 -0.62 -0.91 16 27 C -0.13 -1.11 8.85 36.00 0.32 -0.80 16 28 H 0.06 0.49 7.86 -51.93 -0.41 0.08 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.45 6.27 -51.93 -0.33 0.12 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.78 6.77 -51.92 -0.35 0.43 16 35 H 0.39 3.51 7.23 -40.82 -0.30 3.21 16 36 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 37 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.34 2.44 6.28 -39.29 -0.25 2.19 16 40 H 0.09 0.67 5.98 -51.93 -0.31 0.36 16 41 H 0.05 0.54 5.21 -51.92 -0.27 0.27 16 42 H 0.15 1.20 8.02 -52.48 -0.42 0.78 16 43 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 44 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 45 H 0.08 0.56 7.79 -51.92 -0.40 0.16 16 46 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.08 0.75 6.39 -51.93 -0.33 0.42 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -34.15 394.68 -9.99 -44.14 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.13 Total: 3.28 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.31 Total: -9.53 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.35 Total: -45.03 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.15 -9.99 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567951912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.292 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds