Wall clock time and date at job start Tue Mar 31 2020 19:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 H 1.09004 * 109.46668 * 305.23289 * 3 2 1 5 5 C 1.52999 * 109.47403 * 185.23524 * 3 2 1 6 6 N 1.46493 * 109.47052 * 185.00021 * 5 3 2 7 7 C 1.34776 * 119.99863 * 180.02562 * 6 5 3 8 8 O 1.21283 * 120.00378 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99991 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47067 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00015 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99726 * 0.02562 * 11 10 9 13 13 C 1.38794 * 120.00115 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00279 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00021 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47228 * 90.00233 * 15 13 11 17 17 H 1.48500 * 109.47485 * 210.00144 * 15 13 11 18 18 H 1.48496 * 109.47291 * 330.00310 * 15 13 11 19 19 N 1.46901 * 109.46959 * 65.23151 * 3 2 1 20 20 C 1.46895 * 111.00317 * 63.73912 * 19 3 2 21 21 C 1.50698 * 109.47491 * 176.55828 * 20 19 3 22 22 C 1.38220 * 120.41697 * 260.26755 * 21 20 19 23 23 N 1.31862 * 120.76249 * 180.26257 * 22 21 20 24 24 C 1.31891 * 121.72231 * 359.74627 * 23 22 21 25 25 C 1.38186 * 120.76493 * 359.97026 * 24 23 22 26 26 C 1.38632 * 120.41658 * 79.99781 * 21 20 19 27 27 C 1.50695 * 120.79030 * 0.02562 * 26 21 20 28 28 H 1.09008 * 109.47425 * 175.04566 * 1 2 3 29 29 H 1.09006 * 109.47601 * 295.03788 * 1 2 3 30 30 H 1.08992 * 109.47531 * 55.04440 * 1 2 3 31 31 H 1.09000 * 109.47457 * 239.99498 * 2 1 3 32 32 H 1.09004 * 109.47212 * 119.99775 * 2 1 3 33 33 H 1.09002 * 109.46632 * 304.99388 * 5 3 2 34 34 H 1.08995 * 109.47504 * 64.99385 * 5 3 2 35 35 H 0.97001 * 120.00677 * 359.97438 * 6 5 3 36 36 H 1.08994 * 109.47057 * 299.99469 * 9 7 6 37 37 H 1.09001 * 109.47260 * 59.99907 * 9 7 6 38 38 H 0.96993 * 120.00183 * 180.02562 * 14 13 11 39 39 H 1.00901 * 110.99606 * 187.69190 * 19 3 2 40 40 H 1.09003 * 109.47098 * 56.55205 * 20 19 3 41 41 H 1.09007 * 109.46763 * 296.56211 * 20 19 3 42 42 H 1.07998 * 119.62373 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.61453 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.41838 * 180.02562 * 25 24 23 45 45 H 1.08999 * 109.47513 * 269.71401 * 27 26 21 46 46 H 1.09005 * 109.46757 * 149.72014 * 27 26 21 47 47 H 1.08996 * 109.47719 * 29.72063 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9826 -0.8395 5 6 3.5643 1.4445 -0.1316 6 7 4.0629 2.8167 -0.0119 7 6 5.3852 3.0631 -0.0976 8 8 6.1623 2.1487 -0.2733 9 6 5.8981 4.4749 0.0250 10 16 7.7015 4.4772 -0.1305 11 6 8.0215 6.2010 0.0448 12 1 7.2033 6.8893 0.1970 13 6 9.3250 6.6742 -0.0126 14 7 9.5641 7.9620 0.1189 15 14 10.7402 5.4836 -0.2752 16 1 10.9951 5.3308 -1.7301 17 1 11.9598 6.0102 0.3884 18 1 10.3907 4.1631 0.3074 19 7 1.6561 2.0975 1.2576 20 6 2.3008 1.4489 2.4072 21 6 1.9518 2.1979 3.6675 22 6 2.8448 3.0991 4.2160 23 7 2.5486 3.7543 5.3213 24 6 1.3973 3.5832 5.9415 25 6 0.4529 2.7031 5.4486 26 6 0.7288 1.9959 4.2881 27 6 -0.2744 1.0262 3.7187 28 1 -0.3634 -1.0239 -0.0888 29 1 -0.3634 0.4349 0.9311 30 1 -0.3634 0.5887 -0.8422 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9978 0.8302 0.6576 34 1 3.8456 1.0391 -1.1035 35 1 3.4414 3.5482 0.1283 36 1 5.4643 5.0889 -0.7641 37 1 5.6171 4.8805 0.9970 38 1 10.4750 8.2927 0.0784 39 1 1.8701 3.0833 1.2317 40 1 3.3819 1.4548 2.2685 41 1 1.9504 0.4198 2.4873 42 1 3.7978 3.2657 3.7359 43 1 1.1899 4.1381 6.8445 44 1 -0.4883 2.5676 5.9608 45 1 -0.9301 1.5488 3.0222 46 1 -0.8686 0.6013 4.5278 47 1 0.2496 0.2271 3.1945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567951916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:07 Heat of formation + Delta-G solvation = -12.299370 kcal Electronic energy + Delta-G solvation = -26659.957838 eV Core-core repulsion = 22968.412156 eV Total energy + Delta-G solvation = -3691.545682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69047 -39.66605 -38.06816 -34.72346 -33.84546 -33.11723 -32.44454 -31.14398 -29.96933 -28.24023 -27.69811 -25.92158 -25.60131 -23.52935 -22.93683 -21.92407 -20.51379 -20.09389 -17.97084 -17.36067 -16.95643 -16.53367 -16.43966 -16.13919 -15.46738 -15.09802 -15.03109 -14.94849 -14.36295 -14.19130 -13.95211 -13.84745 -13.57518 -13.34530 -13.21370 -13.09304 -12.92178 -12.81086 -12.76643 -12.46016 -12.36154 -11.78787 -11.70746 -11.48783 -11.28656 -11.23736 -11.05325 -11.01591 -10.62351 -9.87100 -9.66082 -9.60344 -9.60124 -9.28943 -9.10636 -9.00203 -8.80090 -8.52223 -6.93489 -6.29384 -4.01578 0.85063 1.04135 2.71304 2.90129 3.23960 3.32515 3.49236 3.49944 3.61713 3.92488 4.22719 4.32303 4.37474 4.42779 4.46464 4.58246 4.62630 4.70399 4.77391 4.81247 5.06837 5.09644 5.11444 5.12424 5.17350 5.21475 5.27156 5.30959 5.39817 5.44778 5.52111 5.59324 5.64943 5.69505 5.72486 5.73725 5.83415 5.88733 5.97306 6.04261 6.12839 6.37184 6.48653 6.58499 6.91288 7.47028 7.80199 7.93677 8.40330 8.41474 9.16654 10.79920 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.002819 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.108903 B = 9928.854921 C =11723.597446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.093 0.907 5 C 0.084 3.916 6 N -0.738 5.738 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.125 4.125 10 S -0.141 6.141 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.669 5.669 20 C 0.093 3.907 21 C -0.142 4.142 22 C 0.112 3.888 23 N -0.486 5.486 24 C 0.100 3.900 25 C -0.181 4.181 26 C -0.019 4.019 27 C -0.112 4.112 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.395 0.605 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.342 0.658 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.132 0.868 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.734 -15.611 5.756 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.034 4.034 4 H 0.111 0.889 5 C -0.042 4.042 6 N -0.394 5.394 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.300 5.300 20 C -0.036 4.036 21 C -0.144 4.144 22 C -0.045 4.045 23 N -0.195 5.195 24 C -0.057 4.057 25 C -0.201 4.201 26 C -0.028 4.028 27 C -0.168 4.168 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.229 0.771 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.160 0.840 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.171 0.829 43 H 0.171 0.829 44 H 0.150 0.850 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.278 -16.767 5.880 29.284 hybrid contribution -0.096 1.062 -0.250 1.096 sum -23.374 -15.705 5.630 28.717 Atomic orbital electron populations 1.21667 0.94766 1.00877 1.02732 1.21512 0.97025 0.94374 1.02343 1.21962 0.91700 0.96976 0.92727 0.88931 1.22044 0.95175 0.84151 1.02861 1.45955 1.07767 1.09005 1.76648 1.20297 0.81507 0.91022 0.75452 1.90708 1.55454 1.46184 1.46715 1.23281 1.03149 0.95376 1.05729 1.84789 0.97880 1.13049 1.95734 1.22306 0.97300 0.89779 1.57508 0.89376 1.24711 0.98258 0.95039 0.93286 1.69936 1.21470 1.12533 1.47703 0.86738 0.82154 0.83103 0.79867 1.19219 1.19911 1.15947 1.60737 1.61048 1.07037 1.01193 1.20911 0.97752 0.98040 0.86860 1.20666 0.95235 1.00115 0.98410 1.22802 0.98959 0.91143 0.91625 1.67749 1.19664 1.23532 1.08532 1.22787 0.89005 0.95185 0.98674 1.22043 1.01316 0.99181 0.97556 1.20170 0.94146 0.95206 0.93266 1.20829 0.97383 0.97675 1.00947 0.93371 0.91517 0.92948 0.91350 0.91671 0.91235 0.91078 0.77060 0.88524 0.88485 0.91917 0.83958 0.92980 0.89435 0.82928 0.82931 0.85013 0.89975 0.91790 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.74 37.15 0.36 -0.42 16 2 C -0.11 -0.68 5.28 -26.74 -0.14 -0.82 16 3 C 0.08 0.51 2.71 -67.71 -0.18 0.33 16 4 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 5 C 0.08 0.81 4.52 -4.05 -0.02 0.79 16 6 N -0.74 -8.40 5.37 -60.30 -0.32 -8.72 16 7 C 0.53 8.99 7.85 -10.98 -0.09 8.90 16 8 O -0.52 -10.82 15.86 5.56 0.09 -10.73 16 9 C -0.12 -2.36 6.16 36.01 0.22 -2.13 16 10 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 11 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 12 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 13 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 14 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 15 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 19 N -0.67 -4.45 5.92 -107.99 -0.64 -5.09 16 20 C 0.09 0.71 4.50 -4.98 -0.02 0.69 16 21 C -0.14 -1.28 5.37 -104.48 -0.56 -1.84 16 22 C 0.11 1.25 10.83 -17.55 -0.19 1.06 16 23 N -0.49 -5.97 10.36 -13.25 -0.14 -6.10 16 24 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 25 C -0.18 -1.44 9.82 -39.44 -0.39 -1.83 16 26 C -0.02 -0.16 5.92 -104.32 -0.62 -0.77 16 27 C -0.11 -0.64 9.47 36.00 0.34 -0.30 16 28 H 0.05 0.24 8.14 -51.92 -0.42 -0.18 16 29 H 0.07 0.38 7.52 -51.93 -0.39 -0.01 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 33 H 0.07 0.75 6.57 -51.93 -0.34 0.41 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 3.51 7.20 -40.82 -0.29 3.21 16 36 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 37 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 38 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.34 2.39 7.34 -39.29 -0.29 2.10 16 40 H 0.05 0.48 6.04 -51.93 -0.31 0.17 16 41 H 0.09 0.61 4.84 -51.93 -0.25 0.36 16 42 H 0.15 1.68 8.04 -52.49 -0.42 1.26 16 43 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.30 8.10 -51.93 -0.42 -0.12 16 47 H 0.07 0.41 6.09 -51.93 -0.32 0.09 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -34.60 393.26 -9.45 -44.05 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.17 Total: 2.57 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.26 Total: -7.60 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.32 Total: -45.82 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.60 -9.45 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567951916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.755 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds