Wall clock time and date at job start Tue Mar 31 2020 19:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47041 * 2 1 4 4 H 1.08998 * 109.47397 * 54.99919 * 3 2 1 5 5 C 1.53006 * 109.47181 * 174.99919 * 3 2 1 6 6 N 1.46500 * 109.46810 * 174.99686 * 5 3 2 7 7 C 1.34779 * 119.99441 * 179.97438 * 6 5 3 8 8 O 1.21608 * 120.00391 * 0.02562 * 7 6 5 9 9 C 1.47379 * 119.99595 * 179.97438 * 7 6 5 10 10 C 1.39943 * 120.21427 * 89.97961 * 9 7 6 11 11 F 1.35095 * 120.08166 * 0.04335 * 10 9 7 12 12 C 1.38152 * 119.84579 * 180.02562 * 10 9 7 13 13 C 1.38426 * 120.30128 * 0.02562 * 12 10 9 14 14 C 1.38110 * 120.45044 * 359.74256 * 13 12 10 15 15 C 1.38772 * 120.13535 * 0.51073 * 14 13 12 16 16 N 1.39295 * 120.14829 * 179.76920 * 15 14 13 17 17 C 1.34779 * 119.99782 * 24.86081 * 16 15 14 18 18 C 1.50709 * 119.99610 * 185.52291 * 17 16 15 19 19 O 1.21271 * 120.00012 * 5.52481 * 17 16 15 20 20 N 1.46505 * 109.46885 * 294.99865 * 3 2 1 21 21 C 1.36931 * 120.00033 * 85.00382 * 20 3 2 22 22 H 1.08004 * 120.00140 * 359.97438 * 21 20 3 23 23 C 1.38807 * 120.00087 * 180.02562 * 21 20 3 24 24 N 1.31621 * 120.00405 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99947 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47200 * 90.00273 * 25 23 21 27 27 H 1.48502 * 109.46956 * 210.00160 * 25 23 21 28 28 H 1.48492 * 109.47049 * 330.00051 * 25 23 21 29 29 H 1.08997 * 109.47109 * 60.00143 * 1 2 3 30 30 H 1.08994 * 109.46906 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47301 * 300.00085 * 1 2 3 32 32 H 1.08999 * 109.47301 * 239.99915 * 2 1 3 33 33 H 1.09001 * 109.47109 * 119.99350 * 2 1 3 34 34 H 1.08998 * 109.46661 * 54.99910 * 5 3 2 35 35 H 1.08997 * 109.46804 * 295.00122 * 5 3 2 36 36 H 0.96995 * 120.00547 * 359.97438 * 6 5 3 37 37 H 1.07997 * 119.84783 * 179.97438 * 12 10 9 38 38 H 1.07998 * 119.77362 * 179.97438 * 13 12 10 39 39 H 1.08001 * 119.93189 * 180.28017 * 14 13 12 40 40 H 0.96997 * 120.00087 * 205.14136 * 16 15 14 41 41 H 1.08997 * 109.46807 * 90.00456 * 18 17 16 42 42 H 1.09003 * 109.46771 * 209.99936 * 18 17 16 43 43 H 1.08998 * 109.47250 * 330.00384 * 18 17 16 44 44 H 0.96996 * 119.99766 * 264.99776 * 20 3 2 45 45 H 0.96992 * 120.00812 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4444 0.1257 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1655 2.1461 0.2588 9 6 5.8868 4.4438 -0.0343 10 6 6.0264 5.2448 1.1046 11 9 5.7027 4.7545 2.3211 12 6 6.4965 6.5381 0.9822 13 6 6.8294 7.0454 -0.2619 14 6 6.7010 6.2642 -1.3936 15 6 6.2257 4.9643 -1.2925 16 7 6.0915 4.1777 -2.4343 17 6 6.8459 4.4338 -3.5215 18 6 6.6147 3.6652 -4.7970 19 8 7.7107 5.2826 -3.4732 20 7 1.6524 2.0975 -1.2519 21 6 0.4157 2.6735 -1.3689 22 1 -0.2743 2.6446 -0.5384 23 6 0.0482 3.2935 -2.5552 24 7 -1.1407 3.8468 -2.6679 25 14 1.2412 3.3428 -3.9918 26 1 1.0384 2.1445 -4.8450 27 1 0.9991 4.5686 -4.7943 28 1 2.6344 3.3547 -3.4780 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.9954 0.8312 -0.6659 35 1 3.8499 1.0378 1.0960 36 1 3.4410 3.5484 -0.1317 37 1 6.6038 7.1564 1.8612 38 1 7.1957 8.0577 -0.3478 39 1 6.9675 6.6670 -2.3596 40 1 5.4523 3.4483 -2.4484 41 1 5.8801 4.1890 -5.4086 42 1 7.5524 3.5827 -5.3465 43 1 6.2443 2.6682 -4.5585 44 1 2.2719 2.1231 -1.9978 45 1 -1.3974 4.2804 -3.4966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567979124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:25 Heat of formation + Delta-G solvation = -79.108275 kcal Electronic energy + Delta-G solvation = -30041.320745 eV Core-core repulsion = 25780.664835 eV Total energy + Delta-G solvation = -4260.655910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.06954 -41.06084 -39.57457 -38.20085 -36.92640 -35.10609 -33.94173 -32.46692 -31.39944 -30.99640 -30.35233 -28.90489 -28.13031 -24.57457 -23.42419 -23.24311 -22.35236 -20.80052 -20.58807 -20.17252 -18.60818 -18.06232 -17.64327 -17.27769 -16.37804 -16.14680 -15.90635 -15.66012 -15.53684 -15.43562 -15.12847 -14.49939 -14.23564 -14.13899 -13.84408 -13.43097 -13.30324 -13.03124 -13.01483 -12.88865 -12.83894 -12.61195 -12.46749 -12.16450 -11.96694 -11.66607 -11.26200 -11.10256 -10.85187 -10.81430 -10.52514 -10.41292 -10.13664 -10.12581 -9.95169 -9.58980 -9.09827 -9.03501 -8.97128 -8.41584 -7.45728 -5.90790 -3.27517 0.71520 0.92550 2.24855 2.44878 2.67375 3.14942 3.16724 3.23892 3.31289 3.39816 4.02877 4.33315 4.43016 4.56475 4.69285 4.82399 4.89560 5.08164 5.09019 5.10206 5.11848 5.18379 5.34704 5.51885 5.62597 5.64145 5.78958 5.79525 5.80567 5.82918 5.94186 6.08015 6.14691 6.18662 6.35248 6.42565 6.51177 6.62846 6.64695 6.85180 6.97788 7.22043 7.56049 7.69756 7.84238 8.17359 8.27007 9.04057 9.75898 9.95002 11.26896 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.004636 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.702456 B = 6037.885367 C = 7302.914501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.065 0.935 5 C 0.109 3.891 6 N -0.706 5.706 7 C 0.558 3.442 8 O -0.531 6.531 9 C -0.195 4.195 10 C 0.155 3.845 11 F -0.127 7.127 12 C -0.175 4.175 13 C -0.054 4.054 14 C -0.146 4.146 15 C 0.215 3.785 16 N -0.668 5.668 17 C 0.518 3.482 18 C -0.175 4.175 19 O -0.521 6.521 20 N -0.746 5.746 21 C -0.242 4.242 22 H 0.096 0.904 23 C 0.007 3.993 24 N -0.929 5.929 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.281 1.281 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.157 0.843 40 H 0.417 0.583 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.360 0.640 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.265 1.964 2.130 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.015 4.015 6 N -0.358 5.358 7 C 0.342 3.658 8 O -0.408 6.408 9 C -0.202 4.202 10 C 0.135 3.865 11 F -0.106 7.106 12 C -0.195 4.195 13 C -0.073 4.073 14 C -0.166 4.166 15 C 0.117 3.883 16 N -0.311 5.311 17 C 0.307 3.693 18 C -0.234 4.234 19 O -0.397 6.397 20 N -0.389 5.389 21 C -0.372 4.372 22 H 0.113 0.887 23 C -0.189 4.189 24 N -0.576 5.576 25 Si 0.714 3.286 26 H -0.212 1.212 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.250 0.750 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.174 0.826 40 H 0.254 0.746 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.192 0.808 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.152 1.925 2.265 15.441 hybrid contribution -0.064 -0.148 -0.906 0.921 sum 15.088 1.778 1.359 15.253 Atomic orbital electron populations 1.21779 0.95115 0.99772 1.03815 1.22026 0.97429 0.97638 1.00163 1.20567 0.89574 0.93177 0.90868 0.91752 1.21833 0.95794 0.82044 1.01853 1.46150 1.06657 1.11299 1.71651 1.17904 0.82910 0.87525 0.77446 1.90810 1.56219 1.45105 1.48673 1.19590 1.12358 0.95806 0.92400 1.17260 0.98225 0.92006 0.79044 1.91545 1.89986 1.88074 1.40962 1.21050 1.04587 0.94084 0.99783 1.21018 0.95630 0.99821 0.90794 1.21427 1.02429 0.91481 1.01302 1.17373 0.96293 0.90309 0.84280 1.43636 1.41045 1.34112 1.12310 1.21074 0.79807 0.83451 0.84948 1.21943 1.05776 1.01316 0.94369 1.90680 1.31755 1.33399 1.83822 1.42794 1.16825 1.67739 1.11575 1.19053 0.90542 1.27711 0.99899 0.88679 1.24673 0.96369 1.00378 0.97505 1.69678 1.19232 1.41958 1.26724 0.86598 0.80730 0.77352 0.83958 1.21163 1.21863 1.20795 0.89337 0.94812 0.93844 0.92635 0.93474 0.91588 0.91029 0.75019 0.83999 0.84139 0.82569 0.74643 0.87875 0.88021 0.89576 0.80764 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.18 37.16 0.34 -2.17 16 2 C -0.13 -2.04 5.61 -26.73 -0.15 -2.19 16 3 C 0.17 2.76 2.59 -67.92 -0.18 2.59 16 4 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 5 C 0.11 1.62 5.23 -4.04 -0.02 1.60 16 6 N -0.71 -10.72 5.38 -61.40 -0.33 -11.05 16 7 C 0.56 9.01 5.81 -12.54 -0.07 8.94 16 8 O -0.53 -10.04 17.11 5.27 0.09 -9.95 16 9 C -0.19 -2.88 5.65 -104.76 -0.59 -3.47 16 10 C 0.16 2.13 7.29 -38.97 -0.28 1.85 16 11 F -0.13 -1.86 16.83 2.25 0.04 -1.82 16 12 C -0.18 -1.91 10.00 -39.54 -0.40 -2.31 16 13 C -0.05 -0.56 10.02 -39.56 -0.40 -0.95 16 14 C -0.15 -1.84 8.70 -39.43 -0.34 -2.19 16 15 C 0.21 3.01 6.44 -83.49 -0.54 2.47 16 16 N -0.67 -8.72 5.15 -9.69 -0.05 -8.77 16 17 C 0.52 6.39 7.74 -10.98 -0.08 6.30 16 18 C -0.17 -1.49 10.31 36.01 0.37 -1.12 16 19 O -0.52 -7.66 14.25 5.57 0.08 -7.58 16 20 N -0.75 -14.75 4.31 -53.42 -0.23 -14.98 16 21 C -0.24 -5.91 8.24 -15.06 -0.12 -6.03 16 22 H 0.10 2.53 7.55 -52.48 -0.40 2.14 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -26.95 13.97 55.49 0.78 -26.18 16 25 Si 0.88 19.76 27.74 -169.99 -4.71 15.05 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -5.56 6.52 56.52 0.37 -5.20 16 29 H 0.09 1.82 5.99 -51.93 -0.31 1.51 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.41 6.41 8.12 -40.82 -0.33 6.08 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.16 2.00 5.78 -52.49 -0.30 1.70 16 40 H 0.42 5.23 7.91 -40.82 -0.32 4.91 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.36 7.04 5.66 -40.82 -0.23 6.81 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -31.38 380.57 -7.30 -38.68 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -6.13 Total: 17.46 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.56 Total: 3.40 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.16 Total: -60.97 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.17 Total: -17.53 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.71 Total: 15.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.38 -7.30 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567979124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.428 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds