Wall clock time and date at job start Tue Mar 31 2020 19:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47270 * 2 1 4 4 H 1.08999 * 109.47388 * 304.99883 * 3 2 1 5 5 C 1.53005 * 109.46779 * 184.99959 * 3 2 1 6 6 N 1.46500 * 109.46717 * 185.00231 * 5 3 2 7 7 C 1.34778 * 119.99858 * 180.02562 * 6 5 3 8 8 O 1.21590 * 120.00194 * 0.02562 * 7 6 5 9 9 C 1.47603 * 119.99805 * 180.02562 * 7 6 5 10 10 C 1.39747 * 120.06400 * 179.97438 * 9 7 6 11 11 C 1.37692 * 119.96410 * 179.97438 * 10 9 7 12 12 C 1.39069 * 120.10618 * 0.02562 * 11 10 9 13 13 N 1.39547 * 119.93019 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00666 * 24.87768 * 13 12 11 15 15 C 1.50693 * 120.00320 * 185.52420 * 14 13 12 16 16 O 1.21283 * 119.99710 * 5.51921 * 14 13 12 17 17 C 1.39302 * 120.13263 * 0.02562 * 12 11 10 18 18 F 1.35093 * 119.98281 * 180.02562 * 17 12 11 19 19 C 1.37879 * 120.03024 * 359.69953 * 17 12 11 20 20 N 1.46498 * 109.46707 * 65.00660 * 3 2 1 21 21 C 1.36939 * 119.99517 * 274.99366 * 20 3 2 22 22 H 1.07997 * 120.00276 * 0.02562 * 21 20 3 23 23 C 1.38814 * 120.00004 * 180.02562 * 21 20 3 24 24 N 1.31622 * 119.99663 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00204 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47226 * 59.99537 * 25 23 21 27 27 H 1.48502 * 109.47401 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47231 * 299.99937 * 25 23 21 29 29 H 1.08992 * 109.47146 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46875 * 299.99896 * 1 2 3 31 31 H 1.09000 * 109.46980 * 59.99444 * 1 2 3 32 32 H 1.09009 * 109.47169 * 240.00124 * 2 1 3 33 33 H 1.09000 * 109.46980 * 120.00556 * 2 1 3 34 34 H 1.08995 * 109.47325 * 65.00620 * 5 3 2 35 35 H 1.08993 * 109.47630 * 305.00136 * 5 3 2 36 36 H 0.96998 * 120.00227 * 0.27685 * 6 5 3 37 37 H 1.07997 * 120.01238 * 0.02562 * 10 9 7 38 38 H 1.08005 * 119.94402 * 180.02562 * 11 10 9 39 39 H 0.97008 * 119.99619 * 204.87370 * 13 12 11 40 40 H 1.09002 * 109.47155 * 59.99966 * 15 14 13 41 41 H 1.09004 * 109.47254 * 179.97438 * 15 14 13 42 42 H 1.09002 * 109.47311 * 299.99938 * 15 14 13 43 43 H 1.07992 * 120.05030 * 180.29737 * 19 17 12 44 44 H 0.96994 * 120.00375 * 95.00291 * 20 3 2 45 45 H 0.97002 * 119.99319 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8166 -0.0059 7 6 5.3858 3.0628 -0.0868 8 8 6.1654 2.1459 -0.2596 9 6 5.8878 4.4456 0.0345 10 6 7.2590 4.7023 -0.0486 11 6 7.7250 5.9931 0.0643 12 6 6.8333 7.0419 0.2615 13 7 7.3096 8.3487 0.3749 14 6 8.4905 8.6862 -0.1800 15 6 9.0643 10.0610 0.0471 16 8 9.0915 7.8833 -0.8621 17 6 5.4658 6.7906 0.3461 18 9 4.6023 7.8118 0.5372 19 6 4.9926 5.5010 0.2281 20 7 1.6526 2.0973 1.2519 21 6 0.4158 2.6734 1.3689 22 1 -0.2741 2.6446 0.5385 23 6 0.0487 3.2944 2.5549 24 7 0.8897 3.3299 3.5668 25 14 -1.6386 4.0796 2.7148 26 1 -2.6864 3.0471 2.5112 27 1 -1.7833 4.6706 4.0695 28 1 -1.7879 5.1448 1.6910 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8500 1.0376 -1.0960 35 1 3.9955 0.8310 0.6658 36 1 3.4415 3.5477 0.1353 37 1 7.9526 3.8889 -0.2021 38 1 8.7848 6.1912 -0.0003 39 1 6.7906 9.0143 0.8532 40 1 9.2206 10.2177 1.1145 41 1 10.0168 10.1481 -0.4758 42 1 8.3709 10.8114 -0.3326 43 1 3.9321 5.3064 0.2888 44 1 2.2721 2.1230 1.9978 45 1 0.6331 3.7635 4.3956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567990703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:27 Heat of formation + Delta-G solvation = -103.638751 kcal Electronic energy + Delta-G solvation = -28767.555541 eV Core-core repulsion = 24505.835910 eV Total energy + Delta-G solvation = -4261.719631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.07679 -41.77630 -40.94966 -39.11980 -38.19309 -36.06769 -35.32807 -34.16615 -32.31656 -31.65455 -31.47022 -30.17734 -29.00808 -25.85910 -25.14095 -24.34326 -23.39001 -22.07240 -21.57097 -21.23676 -19.75783 -19.20605 -18.63627 -18.24046 -17.65967 -17.22685 -16.94444 -16.78579 -16.53775 -16.35000 -16.15225 -15.66414 -15.50778 -15.45912 -14.99448 -14.64821 -14.62996 -14.29964 -14.17920 -13.85422 -13.68348 -13.62454 -13.29334 -13.06134 -12.95760 -12.84706 -12.75944 -12.73282 -12.37080 -12.13374 -11.87497 -11.80975 -11.62255 -11.32542 -11.24425 -10.95238 -10.83303 -10.11834 -10.06210 -9.30956 -8.96164 -7.85901 -5.12947 -0.52393 -0.00254 1.28648 1.51672 1.52514 1.57751 1.75857 1.85007 2.16204 2.60621 2.61663 2.90061 3.43675 3.47741 3.61393 3.72371 3.89948 3.92861 3.98272 4.05781 4.30173 4.39531 4.49178 4.49643 4.58397 4.59429 4.64342 4.74846 4.82655 4.88135 4.89288 5.03189 5.11022 5.13034 5.13790 5.19730 5.22381 5.44837 5.57740 5.63012 5.66178 5.73950 6.19755 6.34020 6.50712 6.91286 7.12845 7.42242 8.13638 8.38861 9.36591 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.002954 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.054248 B = 9477.311657 C =11316.196225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.163 3.837 4 H 0.060 0.940 5 C 0.121 3.879 6 N -0.704 5.704 7 C 0.557 3.443 8 O -0.576 6.576 9 C -0.136 4.136 10 C -0.044 4.044 11 C -0.120 4.120 12 C 0.148 3.852 13 N -0.660 5.660 14 C 0.508 3.492 15 C -0.163 4.163 16 O -0.561 6.561 17 C 0.055 3.945 18 F -0.133 7.133 19 C -0.092 4.092 20 N -0.727 5.727 21 C -0.217 4.217 22 H 0.080 0.920 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.957 3.043 26 H -0.284 1.284 27 H -0.304 1.304 28 H -0.279 1.279 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.410 0.590 37 H 0.148 0.852 38 H 0.163 0.837 39 H 0.431 0.569 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.147 0.853 44 H 0.373 0.627 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.380 12.067 -7.842 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.078 0.922 5 C -0.003 4.003 6 N -0.355 5.355 7 C 0.345 3.655 8 O -0.458 6.458 9 C -0.140 4.140 10 C -0.064 4.064 11 C -0.140 4.140 12 C 0.050 3.950 13 N -0.306 5.306 14 C 0.300 3.700 15 C -0.222 4.222 16 O -0.439 6.439 17 C 0.033 3.967 18 F -0.111 7.111 19 C -0.112 4.112 20 N -0.368 5.368 21 C -0.348 4.348 22 H 0.097 0.903 23 C -0.263 4.263 24 N -0.617 5.617 25 Si 0.788 3.212 26 H -0.210 1.210 27 H -0.231 1.231 28 H -0.205 1.205 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.247 0.753 37 H 0.166 0.834 38 H 0.180 0.820 39 H 0.270 0.730 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.164 0.836 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.161 11.051 -8.485 19.866 hybrid contribution -1.747 0.957 1.167 2.308 sum 12.414 12.008 -7.318 18.758 Atomic orbital electron populations 1.21697 0.95984 1.00571 1.01797 1.21985 0.96609 0.97262 1.01126 1.20733 0.90786 0.93423 0.89578 0.92229 1.21651 0.94492 0.82339 1.01852 1.45919 1.06920 1.11076 1.71589 1.18289 0.82404 0.88461 0.76334 1.90728 1.56654 1.46566 1.51843 1.19684 0.94651 0.92107 1.07571 1.21302 0.93832 0.97320 0.93948 1.21297 1.01256 0.89995 1.01466 1.18002 0.90256 0.86894 0.99845 1.43594 1.22957 1.09025 1.55024 1.22035 0.79146 0.92034 0.76770 1.21995 1.03589 0.89842 1.06747 1.90706 1.60374 1.54031 1.38798 1.17106 0.85517 0.85046 1.09004 1.91504 1.69015 1.57493 1.93135 1.21247 1.01226 0.90515 0.98260 1.42571 1.15805 1.66119 1.12322 1.19444 0.92499 1.25408 0.97490 0.90255 1.25345 1.00811 1.03479 0.96672 1.69800 1.36745 1.50911 1.04278 0.85453 0.81217 0.78524 0.76015 1.21022 1.23073 1.20507 0.92910 0.93284 0.93182 0.90593 0.93536 0.89803 0.92679 0.75285 0.83396 0.81969 0.72950 0.86319 0.88166 0.86520 0.83584 0.79542 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.13 -4.14 5.61 30.59 0.17 -3.97 16 3 C 0.16 5.73 2.59 44.99 0.12 5.85 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 3.96 5.23 86.38 0.45 4.41 16 6 N -0.70 -23.45 5.34 -466.20 -2.49 -25.94 16 7 C 0.56 19.07 7.76 86.72 0.67 19.75 16 8 O -0.58 -22.53 16.34 -4.00 -0.07 -22.59 16 9 C -0.14 -4.05 5.88 -20.08 -0.12 -4.16 16 10 C -0.04 -1.20 9.58 22.51 0.22 -0.98 16 11 C -0.12 -2.94 8.69 22.34 0.19 -2.75 16 12 C 0.15 3.38 6.44 38.37 0.25 3.63 16 13 N -0.66 -10.40 5.29 -303.34 -1.60 -12.00 16 14 C 0.51 7.91 7.74 87.66 0.68 8.59 16 15 C -0.16 -0.80 10.32 71.23 0.74 -0.07 16 16 O -0.56 -13.65 14.23 -3.04 -0.04 -13.70 16 17 C 0.06 1.40 7.29 22.44 0.16 1.56 16 18 F -0.13 -3.29 16.79 44.97 0.76 -2.53 16 19 C -0.09 -2.58 9.51 22.55 0.21 -2.37 16 20 N -0.73 -32.40 4.50 -322.94 -1.45 -33.85 16 21 C -0.22 -10.70 7.75 84.03 0.65 -10.05 16 22 H 0.08 3.77 7.32 -2.91 -0.02 3.75 16 23 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 24 N -0.97 -55.94 13.06 21.65 0.28 -55.66 16 25 Si 0.96 43.96 29.55 68.60 2.03 45.99 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.99 5.99 -2.39 -0.01 1.98 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.41 13.73 6.15 -92.71 -0.57 13.16 16 37 H 0.15 3.87 7.64 -2.91 -0.02 3.85 16 38 H 0.16 3.92 5.77 -2.91 -0.02 3.90 16 39 H 0.43 4.23 8.44 -92.70 -0.78 3.45 16 40 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.10 0.55 8.12 -2.38 -0.02 0.53 16 42 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.15 4.13 6.39 -2.91 -0.02 4.11 16 44 H 0.37 18.57 7.80 -92.71 -0.72 17.85 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -68.45 380.65 1.92 -66.54 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -1.01 Total: 41.74 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.52 Total: 12.02 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -5.26 Total: -127.46 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.11 Total: -36.29 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.76 Total: -2.53 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.45 1.92 -66.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567990703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.103 kcal (2) G-P(sol) polarization free energy of solvation -68.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds