Wall clock time and date at job start Tue Mar 31 2020 19:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47301 * 2 1 4 4 H 1.09001 * 109.47134 * 54.99742 * 3 2 1 5 5 C 1.52991 * 109.47546 * 174.99986 * 3 2 1 6 6 N 1.46508 * 109.47153 * 175.00087 * 5 3 2 7 7 C 1.34780 * 119.99707 * 180.02562 * 6 5 3 8 8 O 1.21586 * 120.00237 * 359.97438 * 7 6 5 9 9 C 1.47598 * 119.99928 * 179.97438 * 7 6 5 10 10 C 1.39736 * 120.06950 * 179.97438 * 9 7 6 11 11 C 1.37695 * 119.96912 * 179.97438 * 10 9 7 12 12 C 1.39066 * 120.10244 * 0.02562 * 11 10 9 13 13 N 1.39553 * 119.93386 * 179.97438 * 12 11 10 14 14 C 1.34770 * 119.99755 * 24.87572 * 13 12 11 15 15 C 1.50703 * 119.99874 * 185.52823 * 14 13 12 16 16 O 1.21284 * 120.00320 * 5.52349 * 14 13 12 17 17 C 1.39305 * 120.13400 * 0.02562 * 12 11 10 18 18 F 1.35100 * 119.98599 * 180.02562 * 17 12 11 19 19 C 1.37878 * 120.02908 * 359.70694 * 17 12 11 20 20 N 1.46502 * 109.47084 * 295.00262 * 3 2 1 21 21 C 1.36938 * 120.00261 * 84.99090 * 20 3 2 22 22 H 1.08000 * 119.99543 * 0.02562 * 21 20 3 23 23 C 1.38809 * 119.99995 * 179.97438 * 21 20 3 24 24 N 1.31621 * 120.00244 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99928 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47023 * 90.00486 * 25 23 21 27 27 H 1.48502 * 109.47221 * 210.00466 * 25 23 21 28 28 H 1.48499 * 109.47092 * 330.00597 * 25 23 21 29 29 H 1.08999 * 109.47472 * 300.00003 * 1 2 3 30 30 H 1.09001 * 109.46749 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47290 * 59.99945 * 1 2 3 32 32 H 1.09001 * 109.47290 * 120.00055 * 2 1 3 33 33 H 1.08999 * 109.47472 * 239.99997 * 2 1 3 34 34 H 1.09001 * 109.47385 * 294.99545 * 5 3 2 35 35 H 1.09002 * 109.47364 * 55.00012 * 5 3 2 36 36 H 0.97001 * 120.00123 * 359.97438 * 6 5 3 37 37 H 1.08002 * 120.01254 * 359.97438 * 10 9 7 38 38 H 1.07996 * 119.94668 * 180.02562 * 11 10 9 39 39 H 0.97003 * 120.00153 * 204.87139 * 13 12 11 40 40 H 1.09004 * 109.47008 * 359.97438 * 15 14 13 41 41 H 1.09000 * 109.47529 * 119.99933 * 15 14 13 42 42 H 1.09001 * 109.46784 * 239.99958 * 15 14 13 43 43 H 1.08001 * 120.04840 * 180.29774 * 19 17 12 44 44 H 0.96996 * 119.99845 * 265.00033 * 20 3 2 45 45 H 0.97001 * 119.99950 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 7 4.0629 2.8169 0.0060 7 6 5.3856 3.0631 0.0858 8 8 6.1654 2.1461 0.2577 9 6 5.8876 4.4458 -0.0354 10 6 7.2587 4.7027 0.0477 11 6 7.7248 5.9933 -0.0662 12 6 6.8330 7.0421 -0.2633 13 7 7.3092 8.3488 -0.3777 14 6 8.5709 8.5721 -0.7957 15 6 9.1262 9.9730 -0.8007 16 8 9.2594 7.6455 -1.1678 17 6 5.4653 6.7910 -0.3458 18 9 4.6017 7.8120 -0.5379 19 6 4.9930 5.5001 -0.2380 20 7 1.6524 2.0975 -1.2518 21 6 0.4155 2.6734 -1.3689 22 1 -0.2741 2.6450 -0.5381 23 6 0.0485 3.2945 -2.5548 24 7 0.8891 3.3294 -3.5670 25 14 -1.6385 4.0807 -2.7142 26 1 -1.5659 5.4999 -2.2832 27 1 -2.0834 4.0153 -4.1295 28 1 -2.6073 3.3519 -1.8566 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8498 1.0378 1.0961 35 1 3.9954 0.8312 -0.6659 36 1 3.4409 3.5484 -0.1316 37 1 7.9524 3.8892 0.2012 38 1 8.7845 6.1914 -0.0023 39 1 6.7321 9.0965 -0.1565 40 1 8.3677 10.6659 -0.4363 41 1 10.0020 10.0191 -0.1534 42 1 9.4105 10.2475 -1.8166 43 1 3.9331 5.3045 -0.3067 44 1 2.2718 2.1231 -1.9978 45 1 0.6325 3.7631 -4.3958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567990704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:30 Heat of formation + Delta-G solvation = -103.408387 kcal Electronic energy + Delta-G solvation = -28781.439444 eV Core-core repulsion = 24519.729802 eV Total energy + Delta-G solvation = -4261.709642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.07934 -41.77986 -40.95199 -39.12195 -38.19466 -36.07605 -35.33009 -34.16890 -32.32545 -31.65943 -31.47303 -30.17768 -29.00781 -25.86213 -25.14328 -24.34506 -23.39019 -22.07978 -21.57551 -21.24255 -19.76048 -19.21083 -18.64516 -18.23842 -17.66133 -17.19665 -17.01092 -16.73022 -16.55436 -16.36100 -16.15192 -15.66102 -15.51462 -15.46893 -15.00463 -14.66133 -14.63155 -14.29330 -14.17808 -13.88298 -13.67876 -13.61711 -13.27248 -13.04515 -12.99913 -12.85222 -12.77048 -12.73471 -12.36840 -12.11115 -11.86305 -11.80882 -11.62391 -11.32890 -11.24656 -10.95952 -10.84350 -10.11947 -10.06349 -9.31411 -8.96659 -7.86446 -5.13587 -0.52781 -0.00530 1.28095 1.50241 1.51854 1.58580 1.74508 1.86082 2.16450 2.60183 2.60995 2.90734 3.43519 3.47542 3.61313 3.72265 3.89866 3.92746 3.98241 4.05721 4.30396 4.39586 4.45468 4.49593 4.58525 4.59216 4.64525 4.74903 4.82616 4.88007 4.89199 5.02501 5.10914 5.12071 5.13886 5.19539 5.22542 5.44833 5.57851 5.62914 5.65930 5.74195 6.19987 6.33378 6.50657 6.91146 7.12799 7.41556 8.13262 8.38085 9.36238 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.002989 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.747785 B = 9366.700146 C =11178.949393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.163 3.837 4 H 0.061 0.939 5 C 0.121 3.879 6 N -0.704 5.704 7 C 0.557 3.443 8 O -0.576 6.576 9 C -0.136 4.136 10 C -0.044 4.044 11 C -0.120 4.120 12 C 0.147 3.853 13 N -0.659 5.659 14 C 0.508 3.492 15 C -0.160 4.160 16 O -0.563 6.563 17 C 0.055 3.945 18 F -0.133 7.133 19 C -0.092 4.092 20 N -0.728 5.728 21 C -0.214 4.214 22 H 0.081 0.919 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.957 3.043 26 H -0.290 1.290 27 H -0.306 1.306 28 H -0.271 1.271 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.410 0.590 37 H 0.149 0.851 38 H 0.163 0.837 39 H 0.431 0.569 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.146 0.854 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.159 12.358 11.253 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.355 5.355 7 C 0.345 3.655 8 O -0.458 6.458 9 C -0.140 4.140 10 C -0.064 4.064 11 C -0.140 4.140 12 C 0.049 3.951 13 N -0.305 5.305 14 C 0.300 3.700 15 C -0.219 4.219 16 O -0.441 6.441 17 C 0.033 3.967 18 F -0.112 7.112 19 C -0.113 4.113 20 N -0.369 5.369 21 C -0.346 4.346 22 H 0.099 0.901 23 C -0.264 4.264 24 N -0.618 5.618 25 Si 0.788 3.212 26 H -0.217 1.217 27 H -0.233 1.233 28 H -0.196 1.196 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.247 0.753 37 H 0.166 0.834 38 H 0.181 0.819 39 H 0.271 0.729 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.164 0.836 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.988 11.246 11.172 21.142 hybrid contribution -1.747 1.006 -0.985 2.244 sum 12.241 12.252 10.187 20.093 Atomic orbital electron populations 1.21698 0.95968 1.00572 1.01810 1.21983 0.96619 0.97261 1.01122 1.20739 0.90784 0.93428 0.89566 0.92101 1.21656 0.94496 0.82322 1.01868 1.45920 1.06900 1.11052 1.71630 1.18285 0.82408 0.88453 0.76339 1.90727 1.56647 1.46548 1.51858 1.19683 0.94621 0.92123 1.07570 1.21304 0.93756 0.97366 0.93975 1.21297 1.01319 0.90460 1.00899 1.18015 0.90489 0.87374 0.99210 1.43684 1.15608 1.05909 1.65289 1.22060 0.79933 0.93970 0.74082 1.21938 1.04133 0.88982 1.06819 1.90712 1.59283 1.47202 1.46897 1.17107 0.85899 0.84927 1.08737 1.91506 1.69043 1.57496 1.93114 1.21250 1.01250 0.90470 0.98284 1.42595 1.15825 1.66101 1.12357 1.19486 0.92480 1.25208 0.97442 0.90124 1.25357 1.00854 1.03546 0.96687 1.69810 1.36789 1.50947 1.04292 0.85376 0.81270 0.78554 0.76001 1.21741 1.23325 1.19586 0.93153 0.92909 0.93297 0.90533 0.93611 0.89670 0.92807 0.75289 0.83378 0.81945 0.72910 0.87224 0.86677 0.87313 0.83592 0.79608 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.18 71.98 0.66 -4.09 16 2 C -0.13 -4.14 5.61 30.59 0.17 -3.96 16 3 C 0.16 5.72 2.59 44.99 0.12 5.83 16 4 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 5 C 0.12 3.95 5.23 86.37 0.45 4.40 16 6 N -0.70 -23.43 5.34 -466.19 -2.49 -25.92 16 7 C 0.56 19.07 7.76 86.71 0.67 19.74 16 8 O -0.58 -22.51 16.34 -3.99 -0.07 -22.57 16 9 C -0.14 -4.04 5.88 -20.08 -0.12 -4.16 16 10 C -0.04 -1.20 9.58 22.50 0.22 -0.98 16 11 C -0.12 -2.94 8.69 22.34 0.19 -2.74 16 12 C 0.15 3.37 6.44 38.37 0.25 3.62 16 13 N -0.66 -10.46 5.29 -303.32 -1.60 -12.06 16 14 C 0.51 8.13 7.74 87.66 0.68 8.81 16 15 C -0.16 -0.83 10.39 71.24 0.74 -0.09 16 16 O -0.56 -14.14 14.24 -3.04 -0.04 -14.18 16 17 C 0.06 1.40 7.29 22.44 0.16 1.56 16 18 F -0.13 -3.31 16.79 44.97 0.76 -2.55 16 19 C -0.09 -2.59 9.51 22.55 0.21 -2.38 16 20 N -0.73 -32.56 4.51 -322.95 -1.46 -34.02 16 21 C -0.21 -10.61 7.75 84.03 0.65 -9.96 16 22 H 0.08 3.83 7.32 -2.91 -0.02 3.81 16 23 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 24 N -0.97 -56.58 13.06 21.65 0.28 -56.30 16 25 Si 0.96 44.20 29.55 68.60 2.03 46.23 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.98 5.99 -2.39 -0.01 1.97 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.41 13.71 6.16 -92.71 -0.57 13.14 16 37 H 0.15 3.87 7.64 -2.91 -0.02 3.85 16 38 H 0.16 3.92 5.77 -2.91 -0.02 3.91 16 39 H 0.43 4.11 8.28 -92.71 -0.77 3.34 16 40 H 0.11 -0.05 7.92 -2.38 -0.02 -0.07 16 41 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.15 4.14 6.39 -2.91 -0.02 4.12 16 44 H 0.37 18.70 7.80 -92.71 -0.72 17.98 16 45 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -69.39 380.38 1.94 -67.45 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -1.00 Total: 41.73 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.53 Total: 12.19 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -5.27 Total: -128.29 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.11 Total: -36.76 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.76 Total: -2.55 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.39 1.94 -67.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567990704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.954 kcal (2) G-P(sol) polarization free energy of solvation -69.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds