Wall clock time and date at job start Tue Mar 31 2020 19:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47280 * 2 1 4 4 N 1.46497 * 109.47242 * 119.99898 * 2 1 3 5 5 C 1.46495 * 120.00325 * 294.74886 * 4 2 1 6 6 C 1.53002 * 109.47130 * 262.71819 * 5 4 2 7 7 N 1.46496 * 109.47315 * 173.22521 * 6 5 4 8 8 C 1.46503 * 120.00069 * 97.93405 * 7 6 5 9 9 C 1.36934 * 119.99986 * 277.93571 * 7 6 5 10 10 H 1.07999 * 120.00485 * 32.06233 * 9 7 6 11 11 C 1.38819 * 119.99957 * 212.06854 * 9 7 6 12 12 N 1.31613 * 119.99914 * 6.22915 * 11 9 7 13 13 Si 1.86802 * 119.99957 * 186.23072 * 11 9 7 14 14 H 1.48496 * 109.46812 * 90.00047 * 13 11 9 15 15 H 1.48498 * 109.46906 * 209.99584 * 13 11 9 16 16 H 1.48500 * 109.47047 * 329.99817 * 13 11 9 17 17 C 1.34774 * 119.99792 * 114.74346 * 4 2 1 18 18 O 1.21691 * 120.00368 * 3.90712 * 17 4 2 19 19 C 1.46689 * 120.00122 * 183.90092 * 17 4 2 20 20 S 1.76214 * 126.12746 * 351.48911 * 19 17 4 21 21 C 1.70952 * 90.31081 * 179.97438 * 20 19 17 22 22 N 1.29424 * 110.39388 * 359.97438 * 21 20 19 23 23 C 1.30937 * 117.36266 * 0.02562 * 22 21 20 24 24 C 1.50704 * 122.90432 * 179.97438 * 23 22 21 25 25 C 1.53005 * 117.49828 * 8.64097 * 24 23 22 26 26 C 1.53004 * 117.49664 * 300.02008 * 24 23 22 27 27 H 1.09007 * 109.46888 * 300.00121 * 1 2 3 28 28 H 1.08996 * 109.46926 * 59.99612 * 1 2 3 29 29 H 1.08993 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46839 * 240.00247 * 2 1 3 31 31 H 1.08998 * 109.47413 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47476 * 299.99795 * 3 2 1 33 33 H 1.09000 * 109.47564 * 59.99846 * 3 2 1 34 34 H 1.08998 * 109.47212 * 22.71262 * 5 4 2 35 35 H 1.08994 * 109.47340 * 142.71843 * 5 4 2 36 36 H 1.09007 * 109.46792 * 293.22474 * 6 5 4 37 37 H 1.08996 * 109.47279 * 53.22100 * 6 5 4 38 38 H 1.08999 * 109.47134 * 95.63766 * 8 7 6 39 39 H 1.09003 * 109.47016 * 215.64281 * 8 7 6 40 40 H 1.09004 * 109.47075 * 335.63251 * 8 7 6 41 41 H 0.96998 * 120.00117 * 180.02562 * 12 11 9 42 42 H 1.08007 * 124.80004 * 179.97438 * 21 20 19 43 43 H 1.09002 * 115.55368 * 154.35507 * 24 23 22 44 44 H 1.08999 * 117.49798 * 0.02562 * 25 24 23 45 45 H 1.08995 * 117.49557 * 145.02936 * 25 24 23 46 46 H 1.08999 * 117.49928 * 214.97992 * 26 24 23 47 47 H 1.09003 * 117.49847 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7618 -0.1266 2.5236 6 6 2.9865 0.6649 2.9869 7 7 2.6737 1.3612 4.2372 8 6 3.0758 0.7793 5.5202 9 6 2.0053 2.5560 4.2068 10 1 1.2808 2.7499 3.4297 11 6 2.2590 3.5180 5.1749 12 7 3.2266 3.3339 6.0479 13 14 1.2272 5.0739 5.2384 14 1 0.0529 4.8533 6.1203 15 1 2.0467 6.1898 5.7754 16 1 0.7616 5.4153 3.8702 17 6 2.7036 -1.8448 1.0753 18 8 2.9783 -2.2766 -0.0288 19 6 3.1183 -2.5806 2.2746 20 16 2.9967 -2.0101 3.9374 21 6 3.6799 -3.4730 4.4991 22 7 3.9460 -4.2576 3.5048 23 6 3.6633 -3.8226 2.3026 24 6 3.9213 -4.6316 1.0575 25 6 4.3496 -6.0893 1.2383 26 6 5.3661 -5.0456 0.7709 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.8977 0.5360 2.4761 35 1 1.5626 -0.9334 3.2289 36 1 3.8201 -0.0182 3.1501 37 1 3.2582 1.3937 2.2233 38 1 4.0266 1.2111 5.8329 39 1 2.3150 0.9935 6.2708 40 1 3.1850 -0.2998 5.4114 41 1 3.4036 4.0060 6.7245 42 1 3.8635 -3.7091 5.5369 43 1 3.2866 -4.3954 0.2034 44 1 4.4443 -6.4632 2.2577 45 1 3.9966 -6.8124 0.5031 46 1 5.6818 -5.0822 -0.2718 47 1 6.1300 -4.7325 1.4826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571615240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:39 Heat of formation + Delta-G solvation = 54.430830 kcal Electronic energy + Delta-G solvation = -28392.448559 eV Core-core repulsion = 24703.796515 eV Total energy + Delta-G solvation = -3688.652044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62008 -40.64325 -38.15882 -37.41290 -36.90282 -34.25045 -33.03601 -31.26185 -29.87661 -28.09678 -27.85944 -27.11593 -25.39750 -24.24343 -23.29435 -23.16276 -22.55848 -20.92028 -19.55175 -19.44680 -18.63846 -17.73018 -17.55104 -16.96476 -16.55120 -16.41694 -15.78435 -15.59186 -15.48322 -15.26221 -15.10168 -14.95855 -14.64362 -14.37891 -14.01860 -13.96442 -13.42510 -13.24330 -13.15015 -12.99244 -12.90401 -12.80455 -12.63267 -12.48838 -12.38321 -12.21455 -11.99852 -11.92525 -11.86329 -11.72635 -11.60352 -11.30557 -10.97471 -10.64013 -10.40507 -10.29093 -9.91639 -9.49907 -8.62490 -7.78838 -5.39924 -0.73016 0.29010 0.70387 1.39234 1.50173 1.51947 1.59186 1.85271 2.02932 2.52974 3.01545 3.18890 3.34798 3.37170 3.72159 3.82308 3.87973 3.97479 4.02251 4.10970 4.15237 4.28514 4.33054 4.37086 4.48136 4.53242 4.61228 4.74862 4.75954 4.80149 4.88370 4.89859 4.93087 4.97645 5.09757 5.11106 5.22811 5.28222 5.31485 5.31813 5.38474 5.54606 5.71909 5.75277 6.21516 6.39596 6.64659 6.98564 7.18946 7.84044 8.33112 9.21326 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.004117 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.017196 B = 6800.171704 C = 8291.287650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.594 5.594 5 C 0.088 3.912 6 C 0.135 3.865 7 N -0.604 5.604 8 C 0.174 3.826 9 C -0.264 4.264 10 H 0.072 0.928 11 C -0.038 4.038 12 N -0.932 5.932 13 Si 0.961 3.039 14 H -0.285 1.285 15 H -0.300 1.300 16 H -0.267 1.267 17 C 0.594 3.406 18 O -0.556 6.556 19 C -0.338 4.338 20 S 0.252 5.748 21 C -0.008 4.008 22 N -0.496 5.496 23 C 0.166 3.834 24 C -0.113 4.113 25 C -0.147 4.147 26 C -0.152 4.152 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.010 0.990 39 H 0.018 0.982 40 H 0.036 0.964 41 H 0.249 0.751 42 H 0.231 0.769 43 H 0.123 0.877 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 -12.940 -7.995 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.030 3.970 3 C -0.214 4.214 4 N -0.326 5.326 5 C -0.039 4.039 6 C 0.006 3.994 7 N -0.328 5.328 8 C 0.029 3.971 9 C -0.394 4.394 10 H 0.090 0.910 11 C -0.234 4.234 12 N -0.577 5.577 13 Si 0.789 3.211 14 H -0.212 1.212 15 H -0.227 1.227 16 H -0.191 1.191 17 C 0.383 3.617 18 O -0.438 6.438 19 C -0.462 4.462 20 S 0.511 5.489 21 C -0.300 4.300 22 N -0.210 5.210 23 C 0.026 3.974 24 C -0.134 4.134 25 C -0.184 4.184 26 C -0.190 4.190 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.247 0.753 43 H 0.141 0.859 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.347 -12.645 -7.703 14.991 hybrid contribution -0.108 0.729 0.012 0.738 sum -2.455 -11.916 -7.691 14.393 Atomic orbital electron populations 1.22106 0.93309 1.02249 1.03536 1.21227 0.95294 0.93255 0.87215 1.22161 1.00925 0.94974 1.03380 1.47986 1.54190 1.22150 1.08230 1.22635 1.01867 0.97595 0.81761 1.21400 0.94042 0.94750 0.89162 1.43853 1.66892 1.21605 1.00406 1.20764 0.97911 0.91934 0.86532 1.19382 1.15629 0.91854 1.12520 0.90987 1.25926 0.98041 1.00173 0.99304 1.70140 1.32144 1.35595 1.19864 0.85373 0.77866 0.79667 0.78150 1.21219 1.22652 1.19122 1.16932 0.77355 0.80419 0.87019 1.90705 1.57515 1.68656 1.26903 1.25667 1.19257 1.01956 0.99311 1.85781 1.53393 1.14226 0.95457 1.29836 0.98952 0.96832 1.04392 1.66139 1.21444 1.35289 0.98168 1.19900 0.93888 0.90510 0.93071 1.20763 1.01124 0.97203 0.94308 1.23026 1.01727 0.90172 1.03490 1.22942 0.90505 1.02735 1.02843 0.92278 0.89157 0.92822 0.88783 0.93521 0.89209 0.92490 0.88451 0.90713 0.93503 0.93484 0.97197 0.96341 0.94636 0.94218 0.75298 0.85904 0.88219 0.86555 0.86914 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.26 71.98 0.67 -2.66 16 2 C 0.13 3.46 3.22 44.99 0.14 3.60 16 3 C -0.16 -4.00 8.05 71.98 0.58 -3.42 16 4 N -0.59 -18.01 2.39 -802.54 -1.92 -19.92 16 5 C 0.09 2.81 4.34 86.38 0.37 3.18 16 6 C 0.13 5.05 4.96 86.38 0.43 5.48 16 7 N -0.60 -27.03 2.91 -726.92 -2.12 -29.14 16 8 C 0.17 7.60 8.96 127.77 1.15 8.74 16 9 C -0.26 -13.03 9.52 84.04 0.80 -12.23 16 10 H 0.07 3.40 7.84 -2.91 -0.02 3.38 16 11 C -0.04 -1.97 5.25 84.86 0.45 -1.53 16 12 N -0.93 -51.73 10.93 21.65 0.24 -51.49 16 13 Si 0.96 42.02 29.56 68.60 2.03 44.05 16 14 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 C 0.59 19.83 7.56 86.45 0.65 20.48 16 18 O -0.56 -20.24 13.78 -4.32 -0.06 -20.30 16 19 C -0.34 -10.72 6.19 23.88 0.15 -10.58 16 20 S 0.25 7.02 12.73 -56.49 -0.72 6.30 16 21 C -0.01 -0.18 12.22 130.60 1.60 1.41 16 22 N -0.50 -14.12 9.80 -190.40 -1.87 -15.99 16 23 C 0.17 5.08 6.41 42.10 0.27 5.35 16 24 C -0.11 -3.15 5.36 -11.54 -0.06 -3.21 16 25 C -0.15 -3.19 10.09 30.60 0.31 -2.89 16 26 C -0.15 -3.57 10.23 30.60 0.31 -3.26 16 27 H 0.06 1.33 6.93 -2.38 -0.02 1.31 16 28 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 2.59 6.91 -2.39 -0.02 2.57 16 31 H 0.05 1.31 7.87 -2.39 -0.02 1.29 16 32 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.06 1.64 6.79 -2.39 -0.02 1.62 16 34 H 0.10 3.12 6.43 -2.39 -0.02 3.11 16 35 H 0.08 2.34 4.33 -21.51 -0.09 2.24 16 36 H 0.05 1.74 5.80 -6.75 -0.04 1.70 16 37 H 0.05 1.87 6.16 -2.39 -0.01 1.85 16 38 H 0.01 0.49 7.15 -2.39 -0.02 0.47 16 39 H 0.02 0.85 7.79 -2.39 -0.02 0.83 16 40 H 0.04 1.26 4.70 -8.53 -0.04 1.22 16 41 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 42 H 0.23 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.12 3.72 6.37 -2.39 -0.02 3.71 16 44 H 0.10 2.26 7.74 -2.39 -0.02 2.24 16 45 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -62.18 373.07 4.25 -57.93 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.85 Total: 20.09 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 7.81 Total: 8.48 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -5.66 Total: -116.54 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.06 Total: -20.30 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 7.02 SS G_CDS: -0.72 Total: 6.30 kcal Total: -62.18 4.25 -57.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571615240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.361 kcal (2) G-P(sol) polarization free energy of solvation -62.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds