Wall clock time and date at job start Tue Mar 31 2020 21:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.49759 * 2 1 4 4 C 1.53034 * 109.49843 * 239.90159 * 2 1 3 5 5 C 1.53040 * 109.53949 * 301.40975 * 4 2 1 6 6 C 1.53193 * 109.31662 * 298.63979 * 5 4 2 7 7 N 1.46929 * 108.77614 * 54.62512 * 6 5 4 8 8 C 1.34773 * 120.62529 * 126.39352 * 7 6 5 9 9 O 1.21575 * 119.99908 * 186.46528 * 8 7 6 10 10 C 1.47689 * 120.00322 * 6.46708 * 8 7 6 11 11 C 1.39487 * 122.10779 * 188.43035 * 10 8 7 12 12 C 1.34995 * 111.68723 * 179.97438 * 11 10 8 13 13 S 1.71758 * 105.45307 * 359.97438 * 12 11 10 14 14 N 1.30610 * 122.10494 * 8.14068 * 10 8 7 15 15 C 1.46918 * 118.74162 * 306.39813 * 7 6 5 16 16 H 1.08995 * 109.70994 * 293.75228 * 15 7 6 17 17 C 1.53004 * 109.58771 * 173.39070 * 15 7 6 18 18 C 1.53000 * 109.47129 * 180.09665 * 17 15 7 19 19 C 1.52997 * 109.46986 * 180.60461 * 18 17 15 20 20 N 1.46498 * 109.47189 * 179.97438 * 19 18 17 21 21 C 1.36937 * 119.99935 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00473 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99928 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99961 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00211 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47071 * 90.00210 * 25 23 21 27 27 H 1.48498 * 109.47581 * 210.00620 * 25 23 21 28 28 H 1.48505 * 109.47207 * 330.00762 * 25 23 21 29 29 H 1.09002 * 109.47476 * 299.93641 * 1 2 3 30 30 H 1.08997 * 109.47438 * 59.93751 * 1 2 3 31 31 H 1.09007 * 109.47068 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46250 * 61.43285 * 4 2 1 33 33 H 1.09003 * 109.46211 * 181.40670 * 4 2 1 34 34 H 1.09000 * 109.49579 * 58.58792 * 5 4 2 35 35 H 1.09001 * 109.50063 * 178.65039 * 5 4 2 36 36 H 1.08998 * 109.58791 * 174.42000 * 6 5 4 37 37 H 1.09006 * 109.57927 * 294.70485 * 6 5 4 38 38 H 1.08003 * 124.15496 * 359.95833 * 11 10 8 39 39 H 1.08001 * 127.27566 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47253 * 300.09805 * 17 15 7 41 41 H 1.09004 * 109.46749 * 60.09774 * 17 15 7 42 42 H 1.09004 * 109.46922 * 300.60494 * 18 17 15 43 43 H 1.08997 * 109.47111 * 60.60827 * 18 17 15 44 44 H 1.08995 * 109.47383 * 300.00023 * 19 18 17 45 45 H 1.09003 * 109.47291 * 60.00128 * 19 18 17 46 46 H 0.97005 * 120.00125 * 0.02562 * 20 19 18 47 47 H 0.96996 * 119.99947 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7234 -1.2481 5 6 1.5030 -2.1562 -1.2653 6 6 2.0140 -2.9040 -0.0298 7 7 1.6516 -2.1377 1.1703 8 6 0.9744 -2.7212 2.1790 9 8 0.5778 -2.0511 3.1126 10 6 0.7141 -4.1747 2.1502 11 6 -0.1247 -4.7961 3.0753 12 6 -0.2128 -6.1251 2.8549 13 16 0.7852 -6.4299 1.4907 14 7 1.2505 -4.9584 1.2535 15 6 2.0413 -0.7234 1.2499 16 1 3.1272 -0.6436 1.2996 17 6 1.4228 -0.0903 2.4980 18 6 1.8283 1.3828 2.5769 19 6 1.2222 2.0120 3.8329 20 7 1.6110 3.4224 3.9088 21 6 1.1835 4.1951 4.9555 22 1 0.5602 3.7647 5.7252 23 6 1.5524 5.5314 5.0277 24 7 2.3125 6.0559 4.0898 25 14 0.9687 6.5856 6.4550 26 1 1.9558 6.5105 7.5619 27 1 0.8337 7.9949 6.0069 28 1 -0.3475 6.0894 6.9312 29 1 -0.3634 0.5128 0.8905 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6987 -0.1965 -2.1388 33 1 3.1305 -0.7450 -1.2349 34 1 0.4133 -2.1359 -1.2534 35 1 1.8476 -2.6633 -2.1665 36 1 1.5554 -3.8918 0.0150 37 1 3.0977 -3.0064 -0.0870 38 1 -0.6402 -4.2778 3.8704 39 1 -0.7897 -6.8445 3.4171 40 1 0.3368 -0.1658 2.4435 41 1 1.7794 -0.6134 3.3853 42 1 2.9148 1.4587 2.6205 43 1 1.4625 1.9081 1.6947 44 1 0.1358 1.9361 3.7893 45 1 1.5880 1.4867 4.7152 46 1 2.1712 3.8090 3.2176 47 1 2.5705 6.9896 4.1405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656619162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:45 Heat of formation + Delta-G solvation = 19.738953 kcal Electronic energy + Delta-G solvation = -27640.445786 eV Core-core repulsion = 23950.289389 eV Total energy + Delta-G solvation = -3690.156396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.19985 -40.22527 -38.58533 -37.28044 -35.35302 -34.46175 -33.14545 -32.45852 -31.04341 -28.90347 -27.55429 -26.98079 -25.50896 -24.72441 -23.41818 -22.31309 -21.98219 -20.88937 -19.64414 -19.37618 -19.11559 -17.98967 -17.22833 -16.88689 -16.55886 -16.53442 -15.81347 -15.58742 -15.37717 -15.34029 -15.07668 -14.86305 -14.78571 -14.34757 -14.21548 -14.14301 -13.69884 -13.44041 -13.23857 -13.04997 -12.89214 -12.76380 -12.55827 -12.49006 -12.20158 -12.09475 -12.07042 -11.90879 -11.78653 -11.65608 -11.40394 -11.30249 -11.02009 -10.94571 -10.67738 -10.10740 -9.80748 -9.48596 -9.03972 -7.97831 -5.27578 -0.46072 0.54048 0.74949 0.80654 1.44392 1.47493 1.56229 1.94222 2.15624 2.54148 3.34744 3.38659 3.73163 3.77033 3.82318 3.91807 3.97376 4.11633 4.18567 4.22735 4.30912 4.40069 4.54019 4.55326 4.59581 4.61966 4.68897 4.70740 4.77780 4.86655 4.89646 4.95514 5.02121 5.04170 5.08839 5.17178 5.21650 5.25351 5.28078 5.30483 5.44009 5.45062 5.48243 5.54994 5.76038 6.24757 6.37972 7.07396 7.30224 8.04985 8.31478 9.25975 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.002532 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.556290 B =11056.246082 C =12337.199858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.078 3.922 7 N -0.584 5.584 8 C 0.574 3.426 9 O -0.552 6.552 10 C 0.030 3.970 11 C -0.159 4.159 12 C -0.261 4.261 13 S 0.517 5.483 14 N -0.533 5.533 15 C 0.154 3.846 16 H 0.077 0.923 17 C -0.086 4.086 18 C -0.116 4.116 19 C 0.158 3.842 20 N -0.746 5.746 21 C -0.252 4.252 22 H 0.071 0.929 23 C -0.076 4.076 24 N -0.969 5.969 25 Si 0.978 3.022 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.271 1.271 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.070 0.930 38 H 0.163 0.837 39 H 0.219 0.781 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.011 0.989 45 H 0.009 0.991 46 H 0.375 0.625 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -32.916 -13.890 35.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.168 4.168 6 C -0.046 4.046 7 N -0.316 5.316 8 C 0.358 3.642 9 O -0.431 6.431 10 C -0.141 4.141 11 C -0.191 4.191 12 C -0.409 4.409 13 S 0.675 5.325 14 N -0.370 5.370 15 C 0.051 3.949 16 H 0.095 0.905 17 C -0.124 4.124 18 C -0.154 4.154 19 C 0.031 3.969 20 N -0.389 5.389 21 C -0.383 4.383 22 H 0.089 0.911 23 C -0.268 4.268 24 N -0.620 5.620 25 Si 0.806 3.194 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.196 1.196 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.159 0.841 37 H 0.089 0.911 38 H 0.181 0.819 39 H 0.236 0.764 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.029 0.971 45 H 0.027 0.973 46 H 0.207 0.793 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.210 -33.554 -14.810 36.744 hybrid contribution -0.801 2.420 2.139 3.327 sum -3.011 -31.134 -12.672 33.749 Atomic orbital electron populations 1.21814 0.95251 1.01301 1.01405 1.21541 0.96399 0.99755 0.94531 0.90131 1.21563 1.00895 0.95732 0.96765 1.21963 1.01055 0.95749 0.98076 1.22943 1.01369 0.97912 0.82354 1.48000 1.54229 1.10972 1.18357 1.17843 0.78303 0.85573 0.82456 1.90904 1.52433 1.62943 1.36772 1.21097 1.01855 0.95294 0.95898 1.21445 1.01083 0.94864 1.01695 1.27553 1.07269 0.99647 1.06479 1.80442 1.28665 1.06075 1.17357 1.72287 1.29496 1.07918 1.27294 1.21350 0.98570 0.79335 0.95613 0.90504 1.21849 1.01238 0.92482 0.96867 1.21750 1.00176 0.96327 0.97173 1.20673 0.96067 0.83948 0.96184 1.42597 1.61449 1.06901 1.27939 1.19651 1.24805 0.92361 1.01506 0.91138 1.25636 1.01234 0.98311 1.01641 1.69825 1.42266 1.13459 1.36459 0.85074 0.78124 0.77684 0.78485 1.21119 1.21594 1.19576 0.94125 0.91798 0.92973 0.90611 0.91108 0.92073 0.88593 0.84065 0.91127 0.81912 0.76437 0.91468 0.92026 0.92429 0.91700 0.97147 0.97330 0.79340 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.20 71.98 0.59 -2.86 16 2 C -0.10 -2.38 2.30 -10.72 -0.02 -2.40 16 3 H 0.08 2.00 6.78 -2.39 -0.02 1.99 16 4 C -0.11 -1.90 5.43 30.62 0.17 -1.74 16 5 C -0.13 -1.96 5.74 30.67 0.18 -1.78 16 6 C 0.08 1.39 6.00 86.36 0.52 1.91 16 7 N -0.58 -14.18 2.41 -798.57 -1.93 -16.11 16 8 C 0.57 15.92 7.59 86.74 0.66 16.58 16 9 O -0.55 -19.09 12.09 -3.95 -0.05 -19.14 16 10 C 0.03 0.65 6.49 42.12 0.27 0.92 16 11 C -0.16 -2.81 9.98 21.82 0.22 -2.59 16 12 C -0.26 -2.47 11.41 67.07 0.76 -1.70 16 13 S 0.52 4.41 23.20 -56.49 -1.31 3.10 16 14 N -0.53 -8.81 7.32 -75.28 -0.55 -9.36 16 15 C 0.15 4.07 2.72 44.98 0.12 4.20 16 16 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 17 C -0.09 -2.88 2.65 30.60 0.08 -2.80 16 18 C -0.12 -4.35 4.98 30.59 0.15 -4.20 16 19 C 0.16 7.44 6.26 86.38 0.54 7.98 16 20 N -0.75 -42.22 5.60 -343.46 -1.92 -44.15 16 21 C -0.25 -15.32 9.99 84.03 0.84 -14.48 16 22 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 24 N -0.97 -62.05 13.06 21.65 0.28 -61.77 16 25 Si 0.98 48.50 29.55 68.60 2.03 50.53 16 26 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 28 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 29 H 0.04 1.19 6.34 -2.39 -0.02 1.18 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.26 5.97 -2.38 -0.01 1.25 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.03 6.33 -2.39 -0.02 1.01 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.14 2.42 4.00 -56.91 -0.23 2.19 16 37 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.16 3.10 8.00 -2.91 -0.02 3.07 16 39 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 40 H 0.07 2.44 5.18 -2.39 -0.01 2.43 16 41 H 0.06 2.31 6.49 -2.39 -0.02 2.30 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.38 6.61 -2.39 -0.02 2.36 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.37 21.98 7.67 -92.70 -0.71 21.27 16 47 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -75.64 370.65 2.16 -73.48 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.06 Total: 30.55 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.54 Total: -7.14 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -4.12 Total: -131.38 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.31 Total: 3.10 kcal Total: -75.64 2.16 -73.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656619162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.220 kcal (2) G-P(sol) polarization free energy of solvation -75.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds