Wall clock time and date at job start Tue Mar 31 2020 19:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46903 * 2 1 4 4 H 1.08992 * 109.47393 * 302.96412 * 3 2 1 5 5 C 1.53000 * 109.46914 * 182.96680 * 3 2 1 6 6 N 1.46494 * 109.47486 * 184.99910 * 5 3 2 7 7 C 1.34771 * 120.00296 * 179.97438 * 6 5 3 8 8 O 1.21568 * 119.99974 * 0.02562 * 7 6 5 9 9 C 1.47725 * 120.00045 * 180.02562 * 7 6 5 10 10 C 1.39647 * 120.11766 * 359.72129 * 9 7 6 11 11 C 1.37842 * 119.88231 * 179.78886 * 10 9 7 12 12 C 1.38656 * 120.11501 * 0.49270 * 11 10 9 13 13 F 1.35098 * 119.88019 * 179.71718 * 12 11 10 14 14 C 1.38657 * 120.24205 * 359.73981 * 12 11 10 15 15 C 1.37846 * 120.11310 * 0.02583 * 14 12 11 16 16 N 1.46897 * 109.47059 * 62.96796 * 3 2 1 17 17 C 1.46910 * 110.99843 * 65.52191 * 16 3 2 18 18 C 1.50707 * 109.46801 * 182.18224 * 17 16 3 19 19 O 1.21288 * 119.99782 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99756 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99857 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99869 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99933 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00165 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00047 * 359.97438 * 23 21 20 26 26 H 1.48491 * 109.47295 * 89.99891 * 25 23 21 27 27 H 1.48503 * 109.47211 * 210.00090 * 25 23 21 28 28 H 1.48503 * 109.47020 * 330.00057 * 25 23 21 29 29 H 1.08996 * 109.47542 * 54.77371 * 1 2 3 30 30 H 1.08999 * 109.47215 * 174.78019 * 1 2 3 31 31 H 1.09005 * 109.46836 * 294.77571 * 1 2 3 32 32 H 1.09002 * 109.46642 * 240.00238 * 2 1 3 33 33 H 1.08998 * 109.46922 * 120.00402 * 2 1 3 34 34 H 1.09005 * 109.47153 * 64.99620 * 5 3 2 35 35 H 1.09001 * 109.47149 * 305.00665 * 5 3 2 36 36 H 0.97003 * 119.99391 * 0.02562 * 6 5 3 37 37 H 1.07999 * 120.06121 * 0.02783 * 10 9 7 38 38 H 1.07995 * 119.94740 * 180.21012 * 11 10 9 39 39 H 1.07999 * 119.94401 * 179.97438 * 14 12 11 40 40 H 1.08000 * 120.05289 * 179.97438 * 15 14 12 41 41 H 1.00898 * 110.99784 * 189.46879 * 16 3 2 42 42 H 1.09001 * 109.46886 * 302.17708 * 17 16 3 43 43 H 1.08992 * 109.47254 * 62.17990 * 17 16 3 44 44 H 0.97006 * 119.99917 * 359.97438 * 20 18 17 45 45 H 0.97004 * 120.00379 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9714 -0.8621 5 6 3.5682 1.4431 -0.0747 6 7 4.0624 2.8169 0.0454 7 6 5.3870 3.0624 0.0070 8 8 6.1718 2.1437 -0.1279 9 6 5.8854 4.4477 0.1286 10 6 4.9859 5.5054 0.2778 11 6 5.4565 6.7957 0.3953 12 6 6.8198 7.0453 0.3553 13 9 7.2755 8.3124 0.4652 14 6 7.7171 5.9994 0.2025 15 6 7.2575 4.7048 0.0890 16 7 1.6097 2.1139 1.2337 17 6 2.2441 1.5075 2.4118 18 6 1.7388 2.1857 3.6592 19 8 0.9303 3.0858 3.5750 20 7 2.1862 1.7926 4.8682 21 6 1.7262 2.4091 6.0030 22 1 1.0057 3.2101 5.9281 23 6 2.1871 2.0035 7.2495 24 7 1.7466 2.5947 8.3373 25 14 3.4329 0.6175 7.3791 26 1 4.8062 1.1802 7.3304 27 1 3.2388 -0.1041 8.6624 28 1 3.2438 -0.3254 6.2475 29 1 -0.3634 0.5927 -0.8394 30 1 -0.3633 -1.0234 -0.0935 31 1 -0.3633 0.4307 0.9331 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8854 1.0250 -1.0300 35 1 3.9719 0.8393 0.7381 36 1 3.4362 3.5499 0.1534 37 1 3.9237 5.3125 0.3049 38 1 4.7620 7.6141 0.5140 39 1 8.7780 6.1994 0.1716 40 1 7.9572 3.8909 -0.0304 41 1 1.7984 3.1042 1.1910 42 1 1.9989 0.4462 2.4506 43 1 3.3252 1.6284 2.3450 44 1 2.8332 1.0728 4.9355 45 1 2.0685 2.3118 9.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665748388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:17 Heat of formation + Delta-G solvation = -85.950137 kcal Electronic energy + Delta-G solvation = -28847.282045 eV Core-core repulsion = 24586.329450 eV Total energy + Delta-G solvation = -4260.952595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.30002 -40.57564 -39.08662 -38.30864 -37.36429 -34.35606 -33.98391 -32.11966 -31.65905 -31.57675 -31.22126 -28.63212 -26.76282 -24.54915 -24.03942 -23.46245 -22.79226 -20.84630 -20.25529 -19.33948 -18.57672 -18.44317 -17.71014 -16.93258 -16.80630 -16.00098 -15.81186 -15.70172 -15.38997 -15.33506 -14.82094 -14.41872 -14.38086 -14.17926 -14.02821 -13.73723 -13.49903 -13.41275 -13.17886 -13.05854 -12.85965 -12.51966 -12.50346 -12.09349 -12.03529 -11.68318 -11.46859 -11.40954 -11.17004 -10.97623 -10.70595 -10.60270 -10.24590 -9.99623 -9.59052 -9.58494 -9.43594 -9.09163 -8.66412 -8.26089 -8.19105 -6.33187 -3.84647 0.31471 0.81393 2.45714 2.80624 3.01851 3.06342 3.14572 3.39669 3.70975 3.78225 4.01117 4.09183 4.25331 4.34736 4.44122 4.52576 4.67194 4.77088 4.88153 4.94618 5.01155 5.18567 5.24615 5.34425 5.39481 5.47104 5.50199 5.61775 5.65795 5.65978 5.72734 5.76397 5.82015 5.85414 5.89837 5.98452 6.09970 6.17912 6.37598 6.46167 6.95174 7.14268 7.39247 7.55542 7.90048 8.11939 8.57160 8.92670 9.40324 9.79877 10.79801 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007630 B = 0.003565 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.010645 B = 7853.029082 C =10058.481195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.091 0.909 5 C 0.079 3.921 6 N -0.724 5.724 7 C 0.562 3.438 8 O -0.535 6.535 9 C -0.147 4.147 10 C -0.053 4.053 11 C -0.158 4.158 12 C 0.125 3.875 13 F -0.134 7.134 14 C -0.163 4.163 15 C -0.030 4.030 16 N -0.652 5.652 17 C 0.039 3.961 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.589 5.589 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.043 3.957 24 N -0.880 5.880 25 Si 0.878 3.122 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.399 0.601 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.345 0.655 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 1.120 -20.690 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.109 0.891 5 C -0.046 4.046 6 N -0.377 5.377 7 C 0.350 3.650 8 O -0.413 6.413 9 C -0.151 4.151 10 C -0.072 4.072 11 C -0.177 4.177 12 C 0.105 3.895 13 F -0.113 7.113 14 C -0.181 4.181 15 C -0.049 4.049 16 N -0.283 5.283 17 C -0.093 4.093 18 C 0.236 3.764 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.160 4.160 24 N -0.520 5.520 25 Si 0.704 3.296 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.993 0.760 -20.527 22.041 hybrid contribution 1.723 -0.156 0.434 1.783 sum 9.716 0.604 -20.093 22.327 Atomic orbital electron populations 1.21624 0.94472 1.00673 1.03190 1.21503 0.97467 0.94137 1.02016 1.22014 0.90219 0.97404 0.93895 0.89075 1.22251 0.96592 0.82748 1.02999 1.45879 1.07082 1.10073 1.74640 1.18109 0.82226 0.88306 0.76373 1.90786 1.55584 1.45645 1.49255 1.20001 0.94603 0.93169 1.07299 1.21207 0.99865 0.91330 0.94802 1.21133 0.93955 0.98490 1.04091 1.17995 0.92706 0.79169 0.99624 1.91533 1.89614 1.37116 1.93011 1.21157 1.00520 0.91833 1.04618 1.21132 0.94487 0.96386 0.92914 1.60203 1.60837 1.07412 0.99888 1.21832 0.96688 1.00196 0.90592 1.19674 0.85930 0.86956 0.83877 1.90559 1.35743 1.32221 1.86212 1.42212 1.40557 1.33907 1.06200 1.19418 1.24540 1.17444 0.82003 0.86268 1.25026 0.97943 0.97943 0.95102 1.69617 1.43191 1.41298 0.97923 0.86703 0.82051 0.82282 0.78566 1.19643 1.20104 1.19467 0.93105 0.93482 0.90973 0.91695 0.91525 0.90793 0.90668 0.76505 0.84459 0.83735 0.83908 0.83568 0.83532 0.89100 0.93391 0.79744 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.71 37.16 0.36 -1.09 16 2 C -0.11 -1.06 5.28 -26.73 -0.14 -1.20 16 3 C 0.08 0.73 2.73 -67.72 -0.18 0.54 16 4 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 5 C 0.08 0.79 4.46 -4.04 -0.02 0.78 16 6 N -0.72 -7.29 5.26 -61.29 -0.32 -7.61 16 7 C 0.56 6.82 7.77 -12.39 -0.10 6.73 16 8 O -0.53 -8.16 16.34 5.31 0.09 -8.08 16 9 C -0.15 -1.55 5.87 -104.97 -0.62 -2.16 16 10 C -0.05 -0.47 9.54 -39.20 -0.37 -0.85 16 11 C -0.16 -1.39 10.01 -39.57 -0.40 -1.79 16 12 C 0.12 1.18 7.31 -39.27 -0.29 0.90 16 13 F -0.13 -1.36 17.26 2.25 0.04 -1.32 16 14 C -0.16 -1.43 10.01 -39.57 -0.40 -1.82 16 15 C -0.03 -0.30 9.59 -39.20 -0.38 -0.67 16 16 N -0.65 -8.48 5.38 -107.99 -0.58 -9.06 16 17 C 0.04 0.61 5.32 -4.97 -0.03 0.58 16 18 C 0.45 9.78 7.82 -10.98 -0.09 9.70 16 19 O -0.57 -14.44 15.83 5.55 0.09 -14.35 16 20 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 21 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 24 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 25 Si 0.88 19.44 27.74 -169.99 -4.71 14.72 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.67 6.36 -51.93 -0.33 0.34 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.87 6.69 -51.93 -0.35 0.52 16 36 H 0.40 3.34 5.26 -40.82 -0.21 3.13 16 37 H 0.14 0.94 6.40 -52.49 -0.34 0.60 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.15 1.36 7.65 -52.49 -0.40 0.96 16 41 H 0.34 4.46 7.24 -39.29 -0.28 4.17 16 42 H 0.09 1.29 6.30 -51.93 -0.33 0.97 16 43 H 0.05 0.70 6.41 -51.93 -0.33 0.36 16 44 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -33.99 377.12 -7.62 -41.61 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -5.73 Total: 15.07 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.88 Total: 2.02 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.18 Total: -55.36 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.17 Total: -22.43 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.99 -7.62 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665748388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.339 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds