Wall clock time and date at job start Tue Mar 31 2020 19:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46903 * 2 1 4 4 H 1.08992 * 109.47393 * 302.96412 * 3 2 1 5 5 C 1.53000 * 109.46914 * 182.96680 * 3 2 1 6 6 N 1.46494 * 109.47486 * 184.99910 * 5 3 2 7 7 C 1.34771 * 120.00296 * 179.97438 * 6 5 3 8 8 O 1.21568 * 119.99974 * 0.02562 * 7 6 5 9 9 C 1.47725 * 120.00045 * 180.02562 * 7 6 5 10 10 C 1.39647 * 120.11766 * 359.72129 * 9 7 6 11 11 C 1.37842 * 119.88231 * 179.78886 * 10 9 7 12 12 C 1.38656 * 120.11501 * 0.49270 * 11 10 9 13 13 F 1.35098 * 119.88019 * 179.71718 * 12 11 10 14 14 C 1.38657 * 120.24205 * 359.73981 * 12 11 10 15 15 C 1.37846 * 120.11310 * 0.02583 * 14 12 11 16 16 N 1.46897 * 109.47059 * 62.96796 * 3 2 1 17 17 C 1.46910 * 110.99843 * 65.52191 * 16 3 2 18 18 C 1.50707 * 109.46801 * 182.18224 * 17 16 3 19 19 O 1.21288 * 119.99782 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99756 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99857 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99869 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99933 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00165 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00047 * 359.97438 * 23 21 20 26 26 H 1.48491 * 109.47295 * 89.99891 * 25 23 21 27 27 H 1.48503 * 109.47211 * 210.00090 * 25 23 21 28 28 H 1.48503 * 109.47020 * 330.00057 * 25 23 21 29 29 H 1.08996 * 109.47542 * 54.77371 * 1 2 3 30 30 H 1.08999 * 109.47215 * 174.78019 * 1 2 3 31 31 H 1.09005 * 109.46836 * 294.77571 * 1 2 3 32 32 H 1.09002 * 109.46642 * 240.00238 * 2 1 3 33 33 H 1.08998 * 109.46922 * 120.00402 * 2 1 3 34 34 H 1.09005 * 109.47153 * 64.99620 * 5 3 2 35 35 H 1.09001 * 109.47149 * 305.00665 * 5 3 2 36 36 H 0.97003 * 119.99391 * 0.02562 * 6 5 3 37 37 H 1.07999 * 120.06121 * 0.02783 * 10 9 7 38 38 H 1.07995 * 119.94740 * 180.21012 * 11 10 9 39 39 H 1.07999 * 119.94401 * 179.97438 * 14 12 11 40 40 H 1.08000 * 120.05289 * 179.97438 * 15 14 12 41 41 H 1.00898 * 110.99784 * 189.46879 * 16 3 2 42 42 H 1.09001 * 109.46886 * 302.17708 * 17 16 3 43 43 H 1.08992 * 109.47254 * 62.17990 * 17 16 3 44 44 H 0.97006 * 119.99917 * 359.97438 * 20 18 17 45 45 H 0.97004 * 120.00379 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9714 -0.8621 5 6 3.5682 1.4431 -0.0747 6 7 4.0624 2.8169 0.0454 7 6 5.3870 3.0624 0.0070 8 8 6.1718 2.1437 -0.1279 9 6 5.8854 4.4477 0.1286 10 6 4.9859 5.5054 0.2778 11 6 5.4565 6.7957 0.3953 12 6 6.8198 7.0453 0.3553 13 9 7.2755 8.3124 0.4652 14 6 7.7171 5.9994 0.2025 15 6 7.2575 4.7048 0.0890 16 7 1.6097 2.1139 1.2337 17 6 2.2441 1.5075 2.4118 18 6 1.7388 2.1857 3.6592 19 8 0.9303 3.0858 3.5750 20 7 2.1862 1.7926 4.8682 21 6 1.7262 2.4091 6.0030 22 1 1.0057 3.2101 5.9281 23 6 2.1871 2.0035 7.2495 24 7 1.7466 2.5947 8.3373 25 14 3.4329 0.6175 7.3791 26 1 4.8062 1.1802 7.3304 27 1 3.2388 -0.1041 8.6624 28 1 3.2438 -0.3254 6.2475 29 1 -0.3634 0.5927 -0.8394 30 1 -0.3633 -1.0234 -0.0935 31 1 -0.3633 0.4307 0.9331 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8854 1.0250 -1.0300 35 1 3.9719 0.8393 0.7381 36 1 3.4362 3.5499 0.1534 37 1 3.9237 5.3125 0.3049 38 1 4.7620 7.6141 0.5140 39 1 8.7780 6.1994 0.1716 40 1 7.9572 3.8909 -0.0304 41 1 1.7984 3.1042 1.1910 42 1 1.9989 0.4462 2.4506 43 1 3.3252 1.6284 2.3450 44 1 2.8332 1.0728 4.9355 45 1 2.0685 2.3118 9.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665748388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:16 Heat of formation + Delta-G solvation = -111.310162 kcal Electronic energy + Delta-G solvation = -28848.381738 eV Core-core repulsion = 24586.329450 eV Total energy + Delta-G solvation = -4262.052288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.05617 -41.44660 -40.42923 -39.37737 -38.49718 -36.00651 -35.20397 -33.75616 -33.08188 -32.29477 -31.98638 -29.63480 -28.11657 -25.94610 -25.18320 -24.18485 -23.54816 -21.80851 -21.44316 -20.90249 -20.14969 -19.33435 -18.51077 -18.23324 -17.69903 -17.16296 -16.78666 -16.66163 -16.60971 -16.39343 -16.09372 -15.72229 -15.47122 -15.16175 -15.01356 -14.74760 -14.60112 -14.43975 -14.28663 -14.23903 -14.04185 -13.82056 -13.66453 -13.31959 -13.13335 -12.91573 -12.64396 -12.42362 -12.27833 -12.12171 -12.00019 -11.77806 -11.53839 -11.48725 -11.18225 -10.43019 -10.30801 -10.26816 -10.24378 -9.84098 -9.36920 -8.41746 -6.01648 -0.44996 0.12532 1.28542 1.32951 1.41447 1.62277 1.95406 1.99228 2.20967 2.62358 2.72917 3.06986 3.15109 3.39991 3.56171 3.59003 3.72793 3.79457 4.01605 4.10809 4.12081 4.19396 4.27699 4.36295 4.43138 4.56106 4.64656 4.69964 4.75151 4.81649 4.95657 4.96826 5.00735 5.03589 5.13842 5.22366 5.28509 5.40838 5.51556 5.61804 5.67658 5.89808 6.01606 6.31590 6.38688 6.59125 6.88338 7.03323 7.40134 7.95837 8.75680 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007630 B = 0.003565 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.010645 B = 7853.029082 C =10058.481195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.086 3.914 4 H 0.112 0.888 5 C 0.083 3.917 6 N -0.715 5.715 7 C 0.561 3.439 8 O -0.572 6.572 9 C -0.162 4.162 10 C -0.052 4.052 11 C -0.161 4.161 12 C 0.114 3.886 13 F -0.139 7.139 14 C -0.159 4.159 15 C -0.038 4.038 16 N -0.663 5.663 17 C 0.058 3.942 18 C 0.452 3.548 19 O -0.607 6.607 20 N -0.594 5.594 21 C -0.325 4.325 22 H 0.059 0.941 23 C -0.011 4.011 24 N -0.933 5.933 25 Si 0.957 3.043 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.234 1.234 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.407 0.593 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.147 0.853 41 H 0.345 0.655 42 H 0.111 0.889 43 H 0.065 0.935 44 H 0.386 0.614 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.954 -0.630 -22.644 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.024 4.024 4 H 0.130 0.870 5 C -0.043 4.043 6 N -0.368 5.368 7 C 0.349 3.651 8 O -0.452 6.452 9 C -0.165 4.165 10 C -0.071 4.071 11 C -0.179 4.179 12 C 0.094 3.906 13 F -0.118 7.118 14 C -0.178 4.178 15 C -0.057 4.057 16 N -0.295 5.295 17 C -0.074 4.074 18 C 0.239 3.761 19 O -0.491 6.491 20 N -0.235 5.235 21 C -0.454 4.454 22 H 0.077 0.923 23 C -0.210 4.210 24 N -0.574 5.574 25 Si 0.778 3.222 26 H -0.185 1.185 27 H -0.199 1.199 28 H -0.157 1.157 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.245 0.755 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.129 0.871 43 H 0.083 0.917 44 H 0.221 0.779 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.347 -0.987 -22.518 24.401 hybrid contribution 1.178 0.513 0.960 1.603 sum 10.524 -0.474 -21.558 23.995 Atomic orbital electron populations 1.21580 0.95198 1.01120 1.01801 1.21538 0.96690 0.93875 1.02990 1.22066 0.90001 0.97672 0.92676 0.87012 1.22242 0.96436 0.82465 1.03124 1.45846 1.06695 1.10582 1.73666 1.18346 0.82474 0.88514 0.75759 1.90763 1.56505 1.46725 1.51228 1.20040 0.95214 0.92826 1.08464 1.21398 1.00647 0.90915 0.94119 1.21370 0.94088 0.99003 1.03476 1.18205 0.93262 0.79121 1.00006 1.91520 1.89714 1.37458 1.93108 1.21337 1.01537 0.91208 1.03708 1.21229 0.94460 0.96838 0.93182 1.60191 1.61214 1.07682 1.00397 1.21655 0.97308 1.00353 0.88094 1.20905 0.84209 0.85793 0.85159 1.90541 1.37366 1.34057 1.87124 1.42075 1.41389 1.34547 1.05526 1.19007 1.24644 1.17310 0.84467 0.92256 1.26007 1.00123 1.01001 0.93877 1.69790 1.45179 1.43553 0.98835 0.85472 0.78505 0.78519 0.79745 1.18537 1.19899 1.15706 0.92286 0.92610 0.94092 0.89240 0.92063 0.89799 0.91764 0.75488 0.82591 0.82130 0.81984 0.83520 0.83523 0.87118 0.91683 0.77852 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.71 71.98 0.70 -1.82 16 2 C -0.11 -1.74 5.28 30.59 0.16 -1.57 16 3 C 0.09 1.38 2.73 44.92 0.12 1.50 16 4 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 5 C 0.08 1.41 4.46 86.38 0.39 1.80 16 6 N -0.72 -12.81 5.26 -466.10 -2.45 -15.27 16 7 C 0.56 12.80 7.77 86.75 0.67 13.47 16 8 O -0.57 -16.84 16.34 -3.93 -0.06 -16.91 16 9 C -0.16 -3.22 5.87 -20.09 -0.12 -3.33 16 10 C -0.05 -0.85 9.54 22.52 0.21 -0.63 16 11 C -0.16 -2.60 10.01 22.28 0.22 -2.37 16 12 C 0.11 2.02 7.31 22.47 0.16 2.19 16 13 F -0.14 -2.68 17.26 44.97 0.78 -1.91 16 14 C -0.16 -2.60 10.01 22.28 0.22 -2.38 16 15 C -0.04 -0.71 9.59 22.52 0.22 -0.50 16 16 N -0.66 -15.89 5.38 -495.57 -2.66 -18.56 16 17 C 0.06 1.67 5.32 85.56 0.46 2.12 16 18 C 0.45 19.51 7.82 87.66 0.69 20.19 16 19 O -0.61 -31.74 15.83 -3.05 -0.05 -31.79 16 20 N -0.59 -27.64 5.09 -306.99 -1.56 -29.20 16 21 C -0.33 -18.81 10.16 84.04 0.85 -17.96 16 22 H 0.06 4.07 7.39 -2.91 -0.02 4.04 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.93 -56.00 13.96 21.66 0.30 -55.69 16 25 Si 0.96 39.21 27.74 68.60 1.90 41.11 16 26 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.23 -8.15 6.52 99.48 0.65 -7.51 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 1.00 7.85 -2.38 -0.02 0.98 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.03 6.36 -2.39 -0.02 1.01 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.06 1.29 6.69 -2.39 -0.02 1.27 16 36 H 0.41 5.87 5.26 -92.71 -0.49 5.38 16 37 H 0.16 1.81 6.40 -2.91 -0.02 1.79 16 38 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.15 2.67 7.65 -2.91 -0.02 2.65 16 41 H 0.35 8.30 7.24 -89.70 -0.65 7.65 16 42 H 0.11 2.81 6.30 -2.39 -0.02 2.80 16 43 H 0.07 1.70 6.41 -2.39 -0.02 1.68 16 44 H 0.39 15.28 5.76 -92.70 -0.53 14.74 16 45 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -78.18 377.12 0.95 -77.23 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.67 Total: 40.44 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.43 Total: 10.55 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -6.38 Total: -118.72 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.11 Total: -48.69 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.11 kcal Total: -78.18 0.95 -77.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665748388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.083 kcal (2) G-P(sol) polarization free energy of solvation -78.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds