Wall clock time and date at job start Tue Mar 31 2020 19:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47263 * 302.70284 * 3 2 1 5 5 C 1.34778 * 119.99950 * 98.25300 * 4 3 2 6 6 O 1.21549 * 119.99732 * 186.24569 * 5 4 3 7 7 C 1.47856 * 120.00001 * 6.25581 * 5 4 3 8 8 C 1.39645 * 120.48885 * 330.17306 * 7 5 4 9 9 N 1.31706 * 120.87701 * 180.02562 * 8 7 5 10 10 C 1.31788 * 122.03612 * 0.02562 * 9 8 7 11 11 C 1.39600 * 120.88453 * 359.97438 * 10 9 8 12 12 C 1.43197 * 120.48857 * 180.02562 * 11 10 9 13 13 C 8.28391 * 127.15856 * 22.12888 * 2 1 3 14 14 C 1.39710 * 119.02233 * 0.02562 * 11 10 9 15 15 C 1.46500 * 119.99936 * 278.25808 * 4 3 2 16 16 C 1.53048 * 109.46307 * 60.02687 * 15 4 3 17 17 C 1.53195 * 109.31280 * 178.60005 * 16 15 4 18 18 N 1.46925 * 108.76490 * 54.65332 * 17 16 15 19 19 C 1.36930 * 120.62846 * 126.40284 * 18 17 16 20 20 H 1.08007 * 120.00448 * 327.15033 * 19 18 17 21 21 C 1.38813 * 120.00138 * 147.15015 * 19 18 17 22 22 N 1.31618 * 119.99935 * 341.77056 * 21 19 18 23 23 Si 1.86801 * 120.00239 * 161.77930 * 21 19 18 24 24 H 1.48493 * 109.47567 * 89.99707 * 23 21 19 25 25 H 1.48500 * 109.46880 * 210.00068 * 23 21 19 26 26 H 1.48500 * 109.46795 * 329.99727 * 23 21 19 27 27 C 1.46922 * 118.74173 * 306.38566 * 18 17 16 28 28 C 1.53041 * 109.46117 * 299.97156 * 15 4 3 29 29 H 4.40643 * 5.51372 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46477 * 182.70671 * 3 2 1 31 31 H 1.08992 * 109.47087 * 62.70584 * 3 2 1 32 32 H 1.07992 * 119.56297 * 359.97438 * 8 7 5 33 33 H 1.08002 * 119.55580 * 180.02562 * 10 9 8 34 34 H 9.33120 * 127.47476 * 21.65408 * 2 1 3 35 35 H 1.08001 * 120.92113 * 179.97438 * 14 11 10 36 36 H 1.09004 * 109.46338 * 180.02562 * 15 4 3 37 37 H 1.08995 * 109.49249 * 298.56491 * 16 15 4 38 38 H 1.09004 * 109.49384 * 58.65995 * 16 15 4 39 39 H 1.09005 * 109.59732 * 294.86498 * 17 16 15 40 40 H 1.09000 * 109.69607 * 174.50559 * 17 16 15 41 41 H 0.97000 * 120.00387 * 179.97438 * 22 21 19 42 42 H 1.09004 * 109.58645 * 293.81799 * 27 18 17 43 43 H 1.09002 * 109.70518 * 173.46621 * 27 18 17 44 44 H 1.09004 * 109.49482 * 301.33408 * 28 15 4 45 45 H 1.08996 * 109.49897 * 61.43738 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7453 1.1622 5 6 3.5179 -2.0303 1.0258 6 8 3.8151 -2.6833 2.0069 7 6 3.5769 -2.6455 -0.3175 8 6 2.7170 -2.2175 -1.3311 9 7 2.7626 -2.7605 -2.5302 10 6 3.6111 -3.7233 -2.8298 11 6 4.5066 -4.2116 -1.8766 12 6 5.4253 -5.2577 -2.2115 13 6 6.1776 -6.1157 -2.4869 14 6 4.4932 -3.6645 -0.5911 15 6 3.2068 -0.0947 2.4728 16 6 1.8085 0.3661 2.8910 17 6 1.8821 1.0146 4.2770 18 7 2.8860 2.0869 4.2444 19 6 2.5651 3.3555 4.6478 20 1 1.5667 3.7360 4.4901 21 6 3.5230 4.1525 5.2594 22 7 4.6031 3.6049 5.7751 23 14 3.2792 6.0023 5.3507 24 1 2.5546 6.3450 6.6007 25 1 4.6021 6.6768 5.3446 26 1 2.4870 6.4555 4.1793 27 6 4.2409 1.7721 3.7711 28 6 4.1408 1.1149 2.3909 29 1 -1.0499 0.0001 0.0003 30 1 3.0088 1.0274 0.0485 31 1 3.0095 -0.4704 -0.9132 32 1 2.0046 -1.4315 -1.1290 33 1 3.6143 -4.1396 -3.8263 34 1 6.8512 -6.8828 -2.7326 35 1 5.1722 -4.0194 0.1701 36 1 3.5918 -0.8011 3.2083 37 1 1.4336 1.0916 2.1691 38 1 1.1379 -0.4925 2.9263 39 1 2.1702 0.2666 5.0157 40 1 0.9100 1.4319 4.5394 41 1 5.2726 4.1618 6.2021 42 1 4.7214 1.0860 4.4686 43 1 4.8267 2.6884 3.6979 44 1 5.1305 0.7892 2.0705 45 1 3.7437 1.8333 1.6739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671492425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:26 Heat of formation + Delta-G solvation = 150.565864 kcal Electronic energy + Delta-G solvation = -28521.294101 eV Core-core repulsion = 24701.366834 eV Total energy + Delta-G solvation = -3819.927267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.28537 -40.65527 -39.03524 -37.39079 -35.46981 -34.78790 -33.70835 -33.45035 -32.07923 -31.68750 -31.09581 -28.53284 -27.24129 -25.66572 -25.26231 -23.93431 -23.62523 -21.74873 -20.92682 -20.08615 -19.16286 -18.78363 -18.50795 -18.12943 -17.57358 -17.12591 -16.81940 -16.40427 -15.94161 -15.69557 -15.44403 -15.27003 -15.05588 -14.79536 -14.79318 -14.62440 -14.32560 -14.24757 -14.04988 -13.26303 -13.08122 -12.98891 -12.74659 -12.64571 -12.57050 -12.22970 -12.06861 -11.99705 -11.82612 -11.62536 -11.55208 -11.42604 -11.25489 -11.11889 -10.98095 -10.59810 -10.57380 -9.97158 -9.86302 -8.66762 -7.89698 -5.39140 -0.66320 -0.27214 1.31699 1.42384 1.47366 1.48843 1.58812 1.68250 1.76897 1.96856 2.21956 2.50855 2.77724 3.05817 3.20960 3.26254 3.37897 3.42579 3.57855 3.63006 3.64247 3.81226 3.99813 4.02211 4.07168 4.24416 4.32029 4.37957 4.43301 4.61416 4.69058 4.71175 4.78993 4.80711 4.95743 4.99752 5.01560 5.06155 5.11062 5.27450 5.33725 5.37604 5.40472 5.60867 5.66685 6.12979 6.39416 6.46992 6.61495 6.63729 6.83778 7.13084 7.81203 8.37903 9.17209 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.002683 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.181461 B =10434.044825 C =11065.992116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.252 4.252 3 C 0.185 3.815 4 N -0.587 5.587 5 C 0.564 3.436 6 O -0.568 6.568 7 C -0.188 4.188 8 C 0.115 3.885 9 N -0.486 5.486 10 C 0.148 3.852 11 C -0.040 4.040 12 C -0.209 4.209 13 C -0.116 4.116 14 C -0.008 4.008 15 C 0.156 3.844 16 C -0.116 4.116 17 C 0.144 3.856 18 N -0.605 5.605 19 C -0.267 4.267 20 H 0.066 0.934 21 C -0.044 4.044 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.267 1.267 27 C 0.186 3.814 28 C -0.130 4.130 29 H 0.249 0.751 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.196 0.804 33 H 0.196 0.804 34 H 0.265 0.735 35 H 0.144 0.856 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.006 0.994 40 H 0.061 0.939 41 H 0.251 0.749 42 H -0.006 1.006 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -15.111 -21.675 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.253 4.253 3 C 0.064 3.936 4 N -0.317 5.317 5 C 0.353 3.647 6 O -0.448 6.448 7 C -0.194 4.194 8 C -0.041 4.041 9 N -0.194 5.194 10 C -0.010 4.010 11 C -0.042 4.042 12 C -0.209 4.209 13 C -0.132 4.132 14 C -0.034 4.034 15 C 0.053 3.947 16 C -0.156 4.156 17 C 0.018 3.982 18 N -0.329 5.329 19 C -0.397 4.397 20 H 0.084 0.916 21 C -0.241 4.241 22 N -0.578 5.578 23 Si 0.793 3.207 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.192 1.192 27 C 0.059 3.941 28 C -0.170 4.170 29 H 0.265 0.735 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.212 0.788 33 H 0.213 0.787 34 H 0.281 0.719 35 H 0.162 0.838 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.586 -15.045 -21.694 26.527 hybrid contribution 0.743 0.619 1.582 1.854 sum -1.843 -14.426 -20.113 24.820 Atomic orbital electron populations 1.25775 0.96695 0.97295 0.96524 1.23290 0.95017 1.03379 1.03583 1.19367 0.84624 0.99962 0.89605 1.48003 1.62583 1.10890 1.10177 1.18426 0.76372 0.81443 0.88478 1.90776 1.51047 1.62073 1.40879 1.20735 1.02411 1.01305 0.94915 1.24332 0.96044 0.96514 0.87245 1.67927 1.21619 1.09895 1.19923 1.23694 0.87335 0.89870 1.00052 1.16912 0.97314 0.96080 0.93920 1.19758 0.99427 0.97723 1.04022 1.25881 0.95720 0.95966 0.95656 1.21821 0.94762 0.90773 0.96054 1.20923 0.96751 0.93800 0.83205 1.22154 0.95294 0.99847 0.98275 1.20999 0.93162 0.89991 0.94035 1.44254 1.08122 1.06060 1.74418 1.19413 0.98066 0.89955 1.32239 0.91638 1.25930 0.98234 1.02864 0.97025 1.70204 1.12289 1.35417 1.39866 0.85317 0.76695 0.80496 0.78147 1.21167 1.21903 1.19175 1.20422 0.86450 0.96914 0.90288 1.22329 0.98705 0.96468 0.99465 0.73508 0.86878 0.84697 0.78809 0.78684 0.71899 0.83811 0.90887 0.90851 0.91796 0.97605 0.92041 0.94012 0.98815 0.92958 0.91546 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 19.25 74.32 1.43 -1.24 16 2 C -0.25 -5.46 9.30 31.13 0.29 -5.17 16 3 C 0.19 4.10 5.11 84.58 0.43 4.54 16 4 N -0.59 -16.90 2.42 -811.53 -1.97 -18.87 16 5 C 0.56 17.36 7.47 86.79 0.65 18.01 16 6 O -0.57 -21.89 16.11 -3.87 -0.06 -21.95 16 7 C -0.19 -4.64 5.58 -20.03 -0.11 -4.75 16 8 C 0.11 2.41 8.67 85.05 0.74 3.15 16 9 N -0.49 -9.58 10.33 -193.76 -2.00 -11.58 16 10 C 0.15 2.45 10.90 85.03 0.93 3.38 16 11 C -0.04 -0.76 5.73 -21.35 -0.12 -0.88 16 12 C -0.21 -3.42 13.27 30.02 0.40 -3.03 16 13 C -0.12 -1.23 19.25 74.32 1.43 0.20 16 14 C -0.01 -0.18 9.45 22.99 0.22 0.03 16 15 C 0.16 5.45 2.48 45.02 0.11 5.56 16 16 C -0.12 -4.02 4.56 30.68 0.14 -3.88 16 17 C 0.14 6.16 6.52 86.36 0.56 6.72 16 18 N -0.61 -30.40 2.96 -699.08 -2.07 -32.47 16 19 C -0.27 -14.53 9.52 84.03 0.80 -13.73 16 20 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 21 C -0.04 -2.46 4.84 84.86 0.41 -2.05 16 22 N -0.93 -55.48 11.65 21.65 0.25 -55.23 16 23 Si 0.97 44.31 29.59 68.60 2.03 46.34 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 27 C 0.19 8.96 5.29 86.36 0.46 9.42 16 28 C -0.13 -4.80 5.28 30.67 0.16 -4.63 16 29 H 0.25 2.70 7.80 -4.42 -0.03 2.67 16 30 H 0.11 2.42 6.52 -2.38 -0.02 2.40 16 31 H 0.14 2.48 4.07 -2.40 -0.01 2.47 16 32 H 0.20 3.81 3.14 -2.91 -0.01 3.80 16 33 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.26 0.32 7.80 -4.42 -0.03 0.29 16 35 H 0.14 3.37 7.98 -2.91 -0.02 3.34 16 36 H 0.07 2.98 6.92 -2.38 -0.02 2.96 16 37 H 0.07 2.46 6.58 -2.39 -0.02 2.45 16 38 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 40 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 42 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 43 H 0.05 2.79 6.48 -2.39 -0.02 2.78 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.07 2.51 6.79 -2.39 -0.02 2.49 16 Total: -1.00 -72.80 375.72 6.12 -66.68 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.02 Total: 15.45 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 8.92 Total: 11.63 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -5.79 Total: -118.15 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.80 6.12 -66.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671492425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.245 kcal (2) G-P(sol) polarization free energy of solvation -72.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds