Wall clock time and date at job start Tue Mar 31 2020 19:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 H 1.09004 * 109.46717 * 55.00343 * 3 2 1 5 5 N 1.46498 * 109.47408 * 295.00229 * 3 2 1 6 6 C 1.34778 * 120.00418 * 84.99469 * 5 3 2 7 7 O 1.21589 * 119.99311 * 0.02562 * 6 5 3 8 8 N 1.34768 * 120.00287 * 180.02562 * 6 5 3 9 9 C 1.46500 * 120.00002 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47055 * 179.97438 * 9 8 6 11 11 O 1.21293 * 120.00269 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00244 * 180.02562 * 10 9 8 13 13 C 1.37094 * 120.00292 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00078 * 0.02562 * 13 12 10 15 15 C 1.38951 * 119.99936 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99895 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99959 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47425 * 89.99812 * 17 15 13 19 19 H 1.48504 * 109.46722 * 209.99829 * 17 15 13 20 20 H 1.48497 * 109.47136 * 329.99293 * 17 15 13 21 21 C 1.50700 * 109.47394 * 174.99702 * 3 2 1 22 22 C 1.38262 * 119.98980 * 260.00469 * 21 3 2 23 23 C 1.38227 * 120.05195 * 180.02562 * 22 21 3 24 24 C 1.38219 * 120.02402 * 0.25898 * 23 22 21 25 25 C 1.50699 * 120.00977 * 179.74165 * 24 23 22 26 26 C 1.38438 * 119.97312 * 359.48405 * 24 23 22 27 27 F 1.35104 * 120.02404 * 180.25480 * 26 24 23 28 28 C 1.38177 * 119.98533 * 80.02240 * 21 3 2 29 29 H 1.08993 * 109.47554 * 299.99641 * 1 2 3 30 30 H 1.09000 * 109.47519 * 60.00309 * 1 2 3 31 31 H 1.09008 * 109.47199 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47187 * 240.00523 * 2 1 3 33 33 H 1.09000 * 109.47519 * 119.99691 * 2 1 3 34 34 H 0.97007 * 119.99781 * 265.00515 * 5 3 2 35 35 H 0.97005 * 119.99853 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46792 * 299.99665 * 9 8 6 37 37 H 1.09002 * 109.47165 * 59.99987 * 9 8 6 38 38 H 0.97003 * 119.99765 * 359.97438 * 12 10 9 39 39 H 0.96997 * 119.99874 * 180.02562 * 16 15 13 40 40 H 1.07999 * 119.97792 * 359.97438 * 22 21 3 41 41 H 1.08002 * 119.98464 * 179.97438 * 23 22 21 42 42 H 1.09006 * 109.46673 * 90.00104 * 25 24 23 43 43 H 1.09006 * 109.46707 * 209.99462 * 25 24 23 44 44 H 1.08995 * 109.47488 * 329.99993 * 25 24 23 45 45 H 1.07999 * 120.01221 * 0.02562 * 28 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6524 2.0976 -1.2517 6 6 0.4350 2.6644 -1.3670 7 8 -0.3413 2.6325 -0.4317 8 7 0.0783 3.2666 -2.5187 9 6 -1.2447 3.8832 -2.6436 10 6 -1.3916 4.4830 -4.0184 11 8 -0.4805 4.4036 -4.8152 12 7 -2.5348 5.1085 -4.3622 13 6 -2.6682 5.6545 -5.6126 14 1 -1.8573 5.5831 -6.3223 15 6 -3.8471 6.2989 -5.9671 16 7 -3.9752 6.8219 -7.1659 17 14 -5.2499 6.4218 -4.7397 18 1 -5.1019 7.6653 -3.9417 19 1 -6.5436 6.4522 -5.4682 20 1 -5.2195 5.2456 -3.8338 21 6 3.5418 1.4444 0.1239 22 6 4.1339 1.6873 1.3495 23 6 5.5113 1.6899 1.4645 24 6 6.2986 1.4549 0.3530 25 6 7.8004 1.4635 0.4776 26 6 5.7068 1.2063 -0.8736 27 9 6.4753 0.9713 -1.9597 28 6 4.3268 1.2038 -0.9875 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2719 2.1232 -1.9978 35 1 0.6979 3.2923 -3.2646 36 1 -2.0141 3.1260 -2.4931 37 1 -1.3532 4.6658 -1.8927 38 1 -3.2633 5.1723 -3.7248 39 1 -4.7980 7.2720 -7.4132 40 1 3.5197 1.8761 2.2176 41 1 5.9727 1.8802 2.4223 42 1 8.1512 0.4586 0.7126 43 1 8.2411 1.7913 -0.4640 44 1 8.0950 2.1467 1.2741 45 1 3.8641 1.0147 -1.9449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672525728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:04 Heat of formation + Delta-G solvation = -114.123410 kcal Electronic energy + Delta-G solvation = -28307.337438 eV Core-core repulsion = 24045.163158 eV Total energy + Delta-G solvation = -4262.174280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.92434 -41.56177 -40.52999 -39.92605 -37.20446 -36.22806 -35.25685 -33.85399 -33.56810 -33.10736 -31.54783 -29.68828 -28.67905 -26.32501 -25.60125 -24.01583 -22.86254 -22.05922 -21.47385 -21.36827 -20.57366 -19.68760 -18.26205 -17.78812 -17.36697 -17.09418 -17.03375 -16.71511 -16.66539 -16.58617 -16.06236 -15.81289 -15.36808 -15.11391 -14.90030 -14.63709 -14.44704 -14.38493 -14.28564 -14.20618 -13.98102 -13.72611 -13.51633 -13.27933 -12.97194 -12.92516 -12.63118 -12.44436 -12.39252 -12.32887 -11.99943 -11.84805 -11.78909 -11.57679 -11.26883 -10.64737 -10.33697 -10.27467 -9.90839 -9.84955 -9.51032 -8.45314 -6.07330 0.08922 0.20013 1.31525 1.34521 1.44200 1.61088 1.79830 2.16550 2.20885 2.54341 2.80777 3.11014 3.17015 3.30651 3.51999 3.71718 3.88883 4.00690 4.07762 4.16682 4.20734 4.32500 4.41356 4.47305 4.51058 4.63289 4.69438 4.74284 4.78339 4.94006 5.04622 5.07601 5.10620 5.18651 5.20905 5.30282 5.36294 5.38816 5.48591 5.54388 5.62088 5.88576 5.89655 5.94618 6.49319 6.78622 7.00446 7.29033 7.56047 7.79140 8.71150 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.002138 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.776330 B =13096.004936 C =14009.420116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.209 3.791 4 H 0.095 0.905 5 N -0.733 5.733 6 C 0.709 3.291 7 O -0.612 6.612 8 N -0.731 5.731 9 C 0.141 3.859 10 C 0.445 3.555 11 O -0.616 6.616 12 N -0.578 5.578 13 C -0.331 4.331 14 H 0.062 0.938 15 C -0.010 4.010 16 N -0.926 5.926 17 Si 0.960 3.040 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.232 1.232 21 C -0.072 4.072 22 C -0.110 4.110 23 C -0.086 4.086 24 C -0.124 4.124 25 C -0.116 4.116 26 C 0.075 3.925 27 F -0.149 7.149 28 C -0.150 4.150 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.403 0.597 35 H 0.407 0.593 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.392 0.608 39 H 0.281 0.719 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.338 -13.859 23.345 32.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.104 3.896 4 H 0.113 0.887 5 N -0.389 5.389 6 C 0.409 3.591 7 O -0.492 6.492 8 N -0.388 5.388 9 C 0.012 3.988 10 C 0.232 3.768 11 O -0.502 6.502 12 N -0.218 5.218 13 C -0.460 4.460 14 H 0.080 0.920 15 C -0.210 4.210 16 N -0.566 5.566 17 Si 0.780 3.220 18 H -0.181 1.181 19 H -0.199 1.199 20 H -0.155 1.155 21 C -0.073 4.073 22 C -0.129 4.129 23 C -0.104 4.104 24 C -0.125 4.125 25 C -0.172 4.172 26 C 0.056 3.944 27 F -0.128 7.128 28 C -0.169 4.169 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.239 0.761 35 H 0.244 0.756 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.228 0.772 39 H 0.091 0.909 40 H 0.171 0.829 41 H 0.181 0.819 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.110 0.890 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.130 -13.825 23.448 32.162 hybrid contribution -0.315 0.395 -1.390 1.479 sum 16.815 -13.430 22.058 30.816 Atomic orbital electron populations 1.21721 0.95586 1.00554 1.01798 1.21943 0.96008 0.94840 1.03403 1.19751 0.89313 0.93939 0.86561 0.88667 1.45175 1.15245 1.60744 1.17727 1.15773 0.82662 0.78170 0.82453 1.90897 1.52690 1.66198 1.39438 1.44763 1.17807 1.60433 1.15815 1.20672 0.85915 0.98938 0.93255 1.20574 0.83101 0.82826 0.90268 1.90527 1.41514 1.63811 1.54323 1.41918 1.15226 1.50856 1.13806 1.19018 1.02467 1.34004 0.90483 0.91959 1.26090 1.00749 0.95316 0.98809 1.69783 1.28932 1.36717 1.21185 0.85432 0.77288 0.80761 0.78567 1.18056 1.19873 1.15502 1.19699 0.94120 0.99735 0.93756 1.21360 0.95403 0.98787 0.97314 1.21250 0.92903 0.97662 0.98601 1.20310 0.98558 1.01673 0.91975 1.20801 0.88945 1.03850 1.03607 1.17757 0.88846 1.04207 0.83633 1.91465 1.75483 1.92206 1.53639 1.20975 0.91729 1.03655 1.00522 0.92993 0.94516 0.92704 0.91539 0.89086 0.76067 0.75601 0.88033 0.87930 0.77199 0.90942 0.82919 0.81927 0.89845 0.92055 0.89003 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 71.98 0.61 -2.34 16 2 C -0.12 -2.03 5.59 30.59 0.17 -1.86 16 3 C 0.21 3.68 2.46 44.25 0.11 3.79 16 4 H 0.10 1.86 7.44 -2.38 -0.02 1.84 16 5 N -0.73 -15.51 4.98 -461.41 -2.30 -17.81 16 6 C 0.71 19.86 7.13 179.06 1.28 21.14 16 7 O -0.61 -19.73 13.48 -4.00 -0.05 -19.79 16 8 N -0.73 -22.10 5.53 -482.30 -2.67 -24.77 16 9 C 0.14 4.56 6.15 85.63 0.53 5.08 16 10 C 0.44 19.34 7.85 87.66 0.69 20.03 16 11 O -0.62 -31.80 15.24 -3.07 -0.05 -31.85 16 12 N -0.58 -26.54 5.09 -306.98 -1.56 -28.10 16 13 C -0.33 -18.81 10.16 84.04 0.85 -17.96 16 14 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 15 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 16 N -0.93 -54.59 13.96 21.66 0.30 -54.28 16 17 Si 0.96 38.09 27.74 68.60 1.90 39.99 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 21 C -0.07 -1.10 4.95 -19.87 -0.10 -1.19 16 22 C -0.11 -1.30 9.67 22.27 0.22 -1.08 16 23 C -0.09 -0.90 9.70 22.26 0.22 -0.69 16 24 C -0.12 -1.72 5.89 -19.82 -0.12 -1.84 16 25 C -0.12 -1.15 9.83 71.24 0.70 -0.45 16 26 C 0.07 1.34 7.24 22.37 0.16 1.50 16 27 F -0.15 -3.11 16.48 44.97 0.74 -2.36 16 28 C -0.15 -2.51 9.04 22.31 0.20 -2.31 16 29 H 0.05 1.19 7.84 -2.39 -0.02 1.17 16 30 H 0.04 0.96 5.65 -2.39 -0.01 0.95 16 31 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.40 7.45 6.88 -92.70 -0.64 6.81 16 35 H 0.41 12.57 7.45 -92.70 -0.69 11.87 16 36 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.39 15.07 5.76 -92.71 -0.53 14.54 16 39 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.15 1.17 8.04 -2.91 -0.02 1.15 16 41 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.06 0.73 7.65 -2.38 -0.02 0.71 16 44 H 0.09 0.56 8.09 -2.39 -0.02 0.54 16 45 H 0.14 2.13 6.91 -2.91 -0.02 2.11 16 Total: -1.00 -74.13 377.22 1.44 -72.69 By element: Atomic # 1 Polarization: 45.38 SS G_CDS: -0.86 Total: 44.52 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 5.99 Total: 21.76 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -6.23 Total: -124.96 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.10 Total: -51.64 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.74 Total: -2.36 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -74.13 1.44 -72.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672525728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.433 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds