Wall clock time and date at job start Tue Mar 31 2020 19:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47325 * 2 1 4 4 H 1.09003 * 109.46713 * 304.99927 * 3 2 1 5 5 N 1.46503 * 109.46863 * 64.99925 * 3 2 1 6 6 C 1.34769 * 119.99991 * 275.00067 * 5 3 2 7 7 O 1.21592 * 120.00375 * 359.97438 * 6 5 3 8 8 N 1.34781 * 120.00142 * 180.02562 * 6 5 3 9 9 C 1.46495 * 120.00117 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47186 * 179.97438 * 9 8 6 11 11 O 1.21300 * 119.99951 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00127 * 179.97438 * 10 9 8 13 13 C 1.37102 * 119.99764 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00375 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99663 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99864 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99811 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47105 * 90.00036 * 17 15 13 19 19 H 1.48504 * 109.47148 * 210.00441 * 17 15 13 20 20 H 1.48509 * 109.47278 * 330.00186 * 17 15 13 21 21 C 1.50696 * 109.47170 * 185.00122 * 3 2 1 22 22 C 1.38270 * 119.98583 * 279.72523 * 21 3 2 23 23 C 1.38225 * 120.05340 * 180.27491 * 22 21 3 24 24 C 1.38218 * 120.02313 * 359.97438 * 23 22 21 25 25 C 1.50702 * 120.01214 * 179.97438 * 24 23 22 26 26 C 1.38436 * 119.97406 * 0.02562 * 24 23 22 27 27 F 1.35106 * 120.02572 * 179.97438 * 26 24 23 28 28 C 1.38175 * 119.99088 * 100.00031 * 21 3 2 29 29 H 1.09000 * 109.47042 * 59.99737 * 1 2 3 30 30 H 1.08995 * 109.46907 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46683 * 300.00266 * 1 2 3 32 32 H 1.09004 * 109.47272 * 239.99904 * 2 1 3 33 33 H 1.09000 * 109.47042 * 120.00263 * 2 1 3 34 34 H 0.96999 * 119.99933 * 95.00460 * 5 3 2 35 35 H 0.96999 * 119.99781 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47407 * 300.00038 * 9 8 6 37 37 H 1.08997 * 109.47545 * 59.99714 * 9 8 6 38 38 H 0.97000 * 120.00102 * 359.97438 * 12 10 9 39 39 H 0.97009 * 119.99564 * 180.02562 * 16 15 13 40 40 H 1.08003 * 119.97471 * 0.27217 * 22 21 3 41 41 H 1.08000 * 119.99048 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46894 * 270.02239 * 25 24 23 43 43 H 1.08998 * 109.47081 * 30.02295 * 25 24 23 44 44 H 1.09001 * 109.47152 * 150.02259 * 25 24 23 45 45 H 1.08001 * 120.00487 * 359.74696 * 28 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4353 2.6643 1.3670 7 8 -0.3411 2.6326 0.4317 8 7 0.0788 3.2673 2.5185 9 6 -1.2441 3.8840 2.6434 10 6 -1.3910 4.4836 4.0182 11 8 -0.4800 4.4041 4.8150 12 7 -2.5343 5.1092 4.3619 13 6 -2.6681 5.6542 5.6128 14 1 -1.8573 5.5826 6.3226 15 6 -3.8466 6.2996 5.9670 16 7 -4.8329 6.3871 5.1031 17 14 -4.0286 7.0428 7.6710 18 1 -3.5559 8.4503 7.6502 19 1 -5.4566 7.0061 8.0771 20 1 -3.2181 6.2627 8.6405 21 6 3.5420 1.4442 -0.1239 22 6 4.3274 1.2085 0.9894 23 6 5.7052 1.2154 0.8785 24 6 6.2993 1.4575 -0.3458 25 6 7.8015 1.4656 -0.4663 26 6 5.5139 1.6937 -1.4610 27 9 6.0935 1.9310 -2.6582 28 6 4.1337 1.6870 -1.3487 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.2720 2.1231 1.9978 35 1 0.6986 3.2936 3.2642 36 1 -1.3529 4.6661 1.8920 37 1 -2.0136 3.1268 2.4936 38 1 -3.2624 5.1738 3.7243 39 1 -5.6555 6.8380 5.3503 40 1 3.8641 1.0189 1.9464 41 1 6.3178 1.0316 1.7488 42 1 8.1746 2.4745 -0.2904 43 1 8.2288 0.7864 0.2714 44 1 8.0875 1.1417 -1.4670 45 1 3.5199 1.8715 -2.2179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682373680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:07 Heat of formation + Delta-G solvation = -119.106942 kcal Electronic energy + Delta-G solvation = -28164.469584 eV Core-core repulsion = 23902.079202 eV Total energy + Delta-G solvation = -4262.390382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.92760 -41.55151 -40.44693 -39.84936 -37.18093 -36.17196 -35.22673 -33.67862 -33.36076 -33.04721 -31.53612 -29.60669 -28.58289 -26.43789 -25.64343 -24.00323 -22.89996 -22.19866 -21.38720 -21.23702 -20.11134 -19.68476 -18.40025 -17.65156 -17.32729 -17.04971 -17.00141 -16.71014 -16.64859 -16.42119 -16.05234 -15.88815 -15.39657 -15.32875 -14.89690 -14.59154 -14.47031 -14.32940 -14.20135 -13.91382 -13.81723 -13.53176 -13.47938 -13.29094 -12.92331 -12.88343 -12.62953 -12.44470 -12.39890 -12.39214 -12.11959 -11.84023 -11.75263 -11.55472 -11.27003 -10.53276 -10.29672 -10.08879 -9.92510 -9.80544 -9.53054 -8.49708 -5.99699 0.08038 0.19359 1.37452 1.43291 1.54944 1.63303 1.91990 2.17981 2.29476 2.53883 3.04970 3.16994 3.17694 3.37230 3.51722 3.74711 3.89701 4.06558 4.13064 4.18121 4.24025 4.34119 4.41508 4.48614 4.49826 4.65174 4.68432 4.74738 4.78765 4.93204 5.04244 5.06523 5.11745 5.19013 5.20677 5.33264 5.33671 5.37774 5.40064 5.53668 5.62039 5.89087 5.93225 5.98444 6.49759 7.05023 7.05821 7.45084 7.59013 7.96392 8.67136 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.001971 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.281306 B =14204.699708 C =14972.032974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.209 3.791 4 H 0.082 0.918 5 N -0.727 5.727 6 C 0.707 3.293 7 O -0.617 6.617 8 N -0.726 5.726 9 C 0.144 3.856 10 C 0.434 3.566 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.336 4.336 14 H 0.087 0.913 15 C -0.012 4.012 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.271 1.271 19 H -0.273 1.273 20 H -0.269 1.269 21 C -0.071 4.071 22 C -0.116 4.116 23 C -0.086 4.086 24 C -0.123 4.123 25 C -0.115 4.115 26 C 0.077 3.923 27 F -0.147 7.147 28 C -0.145 4.145 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.407 0.593 35 H 0.409 0.591 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.399 0.601 39 H 0.279 0.721 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.719 -13.088 -11.234 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.104 3.896 4 H 0.100 0.900 5 N -0.384 5.384 6 C 0.407 3.593 7 O -0.498 6.498 8 N -0.383 5.383 9 C 0.015 3.985 10 C 0.221 3.779 11 O -0.512 6.512 12 N -0.196 5.196 13 C -0.465 4.465 14 H 0.105 0.895 15 C -0.213 4.213 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.194 1.194 21 C -0.072 4.072 22 C -0.135 4.135 23 C -0.104 4.104 24 C -0.124 4.124 25 C -0.172 4.172 26 C 0.058 3.942 27 F -0.126 7.126 28 C -0.164 4.164 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.245 0.755 35 H 0.246 0.754 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.165 0.835 41 H 0.179 0.821 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 20.416 -13.061 -11.589 26.864 hybrid contribution -0.319 0.724 0.624 1.008 sum 20.097 -12.337 -10.965 26.006 Atomic orbital electron populations 1.21726 0.95826 1.00571 1.01631 1.21928 0.95786 0.94654 1.03626 1.19648 0.89462 0.94008 0.86467 0.89963 1.45050 1.15120 1.60690 1.17555 1.15828 0.82749 0.78238 0.82466 1.90908 1.52929 1.66256 1.39693 1.44693 1.17671 1.60200 1.15757 1.20546 0.85664 0.98342 0.93924 1.20453 0.83576 0.83786 0.90091 1.90467 1.41510 1.65032 1.54152 1.41845 1.14582 1.48628 1.14542 1.19728 1.01628 1.33804 0.91335 0.89543 1.26135 0.94403 0.97269 1.03480 1.69685 1.05887 1.43107 1.36951 0.84867 0.77751 0.78461 0.76900 1.19619 1.19737 1.19396 1.19624 0.94362 0.99788 0.93438 1.21262 0.93892 0.99512 0.98808 1.21234 0.94655 0.97600 0.96897 1.20301 0.97875 1.01629 0.92601 1.20802 0.88954 1.03732 1.03698 1.17697 0.91290 1.04156 0.81067 1.91461 1.84876 1.92173 1.44099 1.21037 0.93000 1.03069 0.99299 0.93638 0.92508 0.94354 0.89631 0.90430 0.75542 0.75359 0.89206 0.89075 0.76726 0.91123 0.83467 0.82105 0.90213 0.88929 0.91654 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.51 71.98 0.61 -2.61 16 2 C -0.12 -2.12 5.59 30.60 0.17 -1.95 16 3 C 0.21 4.01 2.46 44.24 0.11 4.12 16 4 H 0.08 1.91 7.44 -2.39 -0.02 1.89 16 5 N -0.73 -15.50 4.98 -461.41 -2.30 -17.79 16 6 C 0.71 20.98 7.13 179.06 1.28 22.26 16 7 O -0.62 -21.89 13.48 -4.01 -0.05 -21.95 16 8 N -0.73 -22.94 5.53 -482.31 -2.67 -25.61 16 9 C 0.14 5.17 6.15 85.63 0.53 5.70 16 10 C 0.43 19.72 7.85 87.66 0.69 20.40 16 11 O -0.62 -31.58 15.24 -3.09 -0.05 -31.63 16 12 N -0.56 -27.91 5.29 -306.97 -1.62 -29.53 16 13 C -0.34 -18.35 9.68 84.04 0.81 -17.53 16 14 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 15 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 16 N -0.92 -48.55 13.05 21.66 0.28 -48.26 16 17 Si 1.00 41.53 29.55 68.60 2.03 43.56 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 C -0.07 -1.15 4.95 -19.87 -0.10 -1.25 16 22 C -0.12 -1.48 9.05 22.27 0.20 -1.28 16 23 C -0.09 -0.98 9.70 22.26 0.22 -0.76 16 24 C -0.12 -1.74 5.89 -19.82 -0.12 -1.86 16 25 C -0.12 -1.16 9.84 71.24 0.70 -0.46 16 26 C 0.08 1.38 7.24 22.37 0.16 1.54 16 27 F -0.15 -2.94 16.48 44.97 0.74 -2.20 16 28 C -0.14 -2.52 9.65 22.31 0.22 -2.30 16 29 H 0.04 1.17 7.84 -2.39 -0.02 1.15 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 1.07 5.64 -2.39 -0.01 1.06 16 32 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.41 6.74 6.87 -92.71 -0.64 6.10 16 35 H 0.41 12.57 7.45 -92.71 -0.69 11.88 16 36 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.40 19.14 7.90 -92.71 -0.73 18.40 16 39 H 0.28 13.86 8.31 -92.70 -0.77 13.08 16 40 H 0.15 1.33 6.91 -2.91 -0.02 1.31 16 41 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 43 H 0.09 0.56 8.09 -2.39 -0.02 0.54 16 44 H 0.06 0.72 7.64 -2.39 -0.02 0.70 16 45 H 0.14 2.25 8.04 -2.91 -0.02 2.23 16 Total: -1.00 -67.06 380.32 1.30 -65.75 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -1.00 Total: 43.83 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 5.95 Total: 23.84 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -6.31 Total: -121.20 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.10 Total: -53.58 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.74 Total: -2.20 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -67.06 1.30 -65.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682373680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.355 kcal (2) G-P(sol) polarization free energy of solvation -67.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds