Wall clock time and date at job start Tue Mar 31 2020 19:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 N 1.46492 * 109.47086 * 179.97438 * 3 2 1 5 5 C 1.34779 * 120.00330 * 277.22134 * 4 3 2 6 6 O 1.21690 * 119.99943 * 177.25227 * 5 4 3 7 7 C 1.46686 * 119.99806 * 357.24594 * 5 4 3 8 8 S 1.76214 * 126.13077 * 7.72352 * 7 5 4 9 9 C 1.70951 * 90.31173 * 179.97438 * 8 7 5 10 10 N 1.29428 * 110.39098 * 0.34614 * 9 8 7 11 11 C 1.30941 * 117.36690 * 359.72527 * 10 9 8 12 12 C 1.50692 * 122.90344 * 179.97438 * 11 10 9 13 13 C 1.46505 * 119.99783 * 97.22239 * 4 3 2 14 14 C 1.53041 * 109.45780 * 240.06498 * 13 4 3 15 15 C 1.53194 * 109.31288 * 178.61463 * 14 13 4 16 16 N 1.46922 * 108.77621 * 54.63434 * 15 14 13 17 17 C 1.36932 * 120.63085 * 126.41311 * 16 15 14 18 18 H 1.08002 * 120.00159 * 324.58864 * 17 16 15 19 19 C 1.38814 * 120.00352 * 144.58626 * 17 16 15 20 20 N 1.31620 * 119.99542 * 4.12872 * 19 17 16 21 21 Si 1.86797 * 120.00544 * 184.12906 * 19 17 16 22 22 H 1.48501 * 109.46860 * 59.99660 * 21 19 17 23 23 H 1.48497 * 109.47350 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47208 * 300.00155 * 21 19 17 25 25 C 1.46923 * 118.74025 * 306.39617 * 16 15 14 26 26 C 1.53042 * 109.46228 * 120.00021 * 13 4 3 27 27 H 1.08997 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47058 * 299.99956 * 1 2 3 29 29 H 1.08999 * 109.47397 * 59.99879 * 1 2 3 30 30 H 1.08999 * 109.47377 * 240.00414 * 2 1 3 31 31 H 1.08999 * 109.47397 * 120.00121 * 2 1 3 32 32 H 1.08999 * 109.46656 * 59.99972 * 3 2 1 33 33 H 1.08999 * 109.47083 * 300.00313 * 3 2 1 34 34 H 1.07997 * 124.80141 * 180.11130 * 9 8 7 35 35 H 1.09004 * 109.47528 * 269.99916 * 12 11 10 36 36 H 1.09003 * 109.47559 * 30.00799 * 12 11 10 37 37 H 1.09007 * 109.46788 * 150.00318 * 12 11 10 38 38 H 1.08995 * 109.45013 * 0.03277 * 13 4 3 39 39 H 1.08999 * 109.49723 * 298.56652 * 14 13 4 40 40 H 1.08999 * 109.49972 * 58.66223 * 14 13 4 41 41 H 1.09000 * 109.58322 * 294.84980 * 15 14 13 42 42 H 1.08997 * 109.70453 * 174.49744 * 15 14 13 43 43 H 0.97003 * 120.00219 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58497 * 293.81822 * 25 16 15 45 45 H 1.09001 * 109.70578 * 173.46204 * 25 16 15 46 46 H 1.09002 * 109.49569 * 301.33687 * 26 13 4 47 47 H 1.08999 * 109.49764 * 61.39781 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1784 1.2960 1.1588 6 8 5.3942 1.2458 1.1535 7 6 3.4457 1.1971 2.4258 8 16 1.6984 1.0592 2.6075 9 6 1.8696 1.0128 4.3078 10 7 3.1178 1.1026 4.6380 11 6 3.9914 1.2025 3.6678 12 6 5.4745 1.3145 3.9100 13 6 4.2379 1.6019 -1.2578 14 6 5.1165 0.3715 -1.4953 15 6 5.8550 0.5260 -2.8286 16 7 6.5890 1.7986 -2.8180 17 6 7.9306 1.8325 -3.0899 18 1 8.5678 1.0227 -2.7664 19 6 8.4718 2.9077 -3.7814 20 7 7.7113 3.9322 -4.1045 21 14 10.2791 2.9005 -4.2533 22 1 10.5573 1.7340 -5.1291 23 1 10.6060 4.1536 -4.9800 24 1 11.1107 2.8078 -3.0265 25 6 5.8561 3.0343 -2.5105 26 6 5.1177 2.8518 -1.1808 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.0516 0.9250 5.0075 35 1 5.7498 2.3654 3.9996 36 1 5.7329 0.7913 4.8307 37 1 6.0138 0.8677 3.0746 38 1 3.5296 1.7064 -2.0797 39 1 5.8414 0.2805 -0.6864 40 1 4.4918 -0.5211 -1.5268 41 1 5.1351 0.5262 -3.6471 42 1 6.5555 -0.2989 -2.9585 43 1 8.0893 4.6834 -4.5880 44 1 5.1363 3.2391 -3.3030 45 1 6.5559 3.8660 -2.4286 46 1 4.4937 3.7245 -0.9883 47 1 5.8422 2.7376 -0.3744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690132981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:33 Heat of formation + Delta-G solvation = 38.961952 kcal Electronic energy + Delta-G solvation = -28438.173993 eV Core-core repulsion = 24748.851168 eV Total energy + Delta-G solvation = -3689.322825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55120 -39.57886 -36.95585 -36.22558 -33.58637 -32.15567 -31.78413 -30.16038 -29.58686 -28.16672 -26.41090 -25.20067 -24.76990 -22.89056 -22.19807 -21.80058 -20.67989 -19.44609 -18.74477 -18.04907 -16.84173 -16.65517 -16.11138 -15.49887 -15.20994 -14.89188 -14.65300 -14.39851 -13.93099 -13.70589 -13.60772 -13.53032 -13.19643 -12.96498 -12.78557 -12.65792 -12.50338 -12.45257 -12.22574 -11.90081 -11.68039 -11.45231 -11.38445 -11.14863 -11.04225 -10.81151 -10.72906 -10.31340 -10.11348 -10.00152 -9.76494 -9.72513 -9.60560 -9.40146 -9.23246 -8.88750 -8.45748 -8.28299 -6.48825 -5.72618 -3.24661 0.16931 1.10408 1.47835 2.41816 3.00751 3.23594 3.43210 3.47251 3.49062 4.03921 4.41622 4.53823 4.59856 4.69903 4.92360 4.96835 5.04319 5.13602 5.29341 5.41323 5.45056 5.46685 5.63677 5.68739 5.69448 5.74270 5.75722 5.79765 5.85816 5.86692 6.01686 6.15400 6.31451 6.38081 6.41666 6.58358 6.63952 6.80034 6.87509 7.03364 7.12845 7.40222 7.52085 7.62312 7.84986 7.86776 8.29261 8.59865 9.31089 9.90045 10.49540 11.33650 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.003398 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.820401 B = 8239.109970 C = 9254.712694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.151 4.151 3 C 0.097 3.903 4 N -0.604 5.604 5 C 0.592 3.408 6 O -0.501 6.501 7 C -0.297 4.297 8 S 0.196 5.804 9 C -0.012 4.012 10 N -0.479 5.479 11 C 0.142 3.858 12 C -0.094 4.094 13 C 0.163 3.837 14 C -0.147 4.147 15 C 0.151 3.849 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.062 0.938 19 C 0.008 3.992 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.173 3.827 26 C -0.156 4.156 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.196 0.804 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.015 0.985 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.012 0.988 45 H 0.102 0.898 46 H 0.043 0.957 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.423 -6.022 12.754 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C -0.029 4.029 4 N -0.336 5.336 5 C 0.378 3.622 6 O -0.378 6.378 7 C -0.420 4.420 8 S 0.452 5.548 9 C -0.306 4.306 10 N -0.194 5.194 11 C 0.004 3.996 12 C -0.152 4.152 13 C 0.062 3.938 14 C -0.187 4.187 15 C 0.024 3.976 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.080 0.920 19 C -0.190 4.190 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.046 3.954 26 C -0.196 4.196 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.212 0.788 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.030 0.970 45 H 0.120 0.880 46 H 0.061 0.939 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.488 -5.930 12.577 23.133 hybrid contribution 1.306 0.139 0.089 1.317 sum -17.182 -5.791 12.666 22.117 Atomic orbital electron populations 1.21727 0.94597 1.02286 1.01978 1.22182 0.96685 0.96797 1.03348 1.21986 0.80726 0.97448 1.02737 1.48210 1.05764 1.71975 1.07638 1.16716 0.86702 0.77265 0.81529 1.90802 1.12245 1.49228 1.85529 1.25735 0.96225 1.20591 0.99464 1.84593 1.03872 1.64972 1.01318 1.29173 0.97586 1.01520 1.02304 1.66227 1.00871 1.16087 1.36185 1.20734 0.98151 0.94920 0.85763 1.20717 0.86815 1.03474 1.04238 1.21215 0.93117 0.97401 0.82105 1.22482 0.99273 0.95004 1.01981 1.20857 0.94124 0.90298 0.92318 1.43962 1.05589 1.01043 1.80773 1.19121 0.83628 1.06492 1.28676 0.91988 1.25292 0.98153 0.97834 0.97724 1.69872 1.34796 1.07767 1.42734 0.86355 0.84979 0.76867 0.78485 1.20910 1.21635 1.20910 1.20921 0.94233 0.91381 0.88833 1.22698 0.98937 0.94151 1.03783 0.92075 0.92548 0.92152 0.90572 0.91261 0.90803 0.88623 0.78762 0.90225 0.90952 0.87636 0.90369 0.89772 0.93703 0.96748 0.92646 0.93563 0.96961 0.87977 0.93864 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.78 37.16 0.36 -0.57 16 2 C -0.15 -1.34 5.19 -26.73 -0.14 -1.47 16 3 C 0.10 1.00 4.96 -4.04 -0.02 0.98 16 4 N -0.60 -8.78 2.44 -167.59 -0.41 -9.19 16 5 C 0.59 9.55 6.98 -12.85 -0.09 9.46 16 6 O -0.50 -9.75 10.51 5.20 0.05 -9.70 16 7 C -0.30 -4.04 6.12 -37.09 -0.23 -4.27 16 8 S 0.20 1.78 14.71 -107.50 -1.58 0.19 16 9 C -0.01 -0.11 12.22 51.75 0.63 0.52 16 10 N -0.48 -6.15 10.50 -11.54 -0.12 -6.28 16 11 C 0.14 1.98 6.79 -83.90 -0.57 1.41 16 12 C -0.09 -1.26 9.80 36.00 0.35 -0.91 16 13 C 0.16 2.80 2.51 -67.88 -0.17 2.63 16 14 C -0.15 -2.75 5.27 -26.61 -0.14 -2.89 16 15 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 16 N -0.59 -15.18 3.00 -172.33 -0.52 -15.70 16 17 C -0.25 -7.02 9.55 -15.06 -0.14 -7.17 16 18 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 19 C 0.01 0.23 5.32 -17.43 -0.09 0.14 16 20 N -0.91 -26.37 10.62 55.49 0.59 -25.78 16 21 Si 0.90 22.07 29.56 -169.99 -5.02 17.05 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.17 4.21 5.26 -3.71 -0.02 4.19 16 26 C -0.16 -3.17 5.27 -26.61 -0.14 -3.31 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.30 7.18 -51.93 -0.37 -0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.67 6.14 -49.01 -0.30 0.37 16 32 H 0.07 0.71 4.39 -22.20 -0.10 0.61 16 33 H 0.10 0.89 7.77 -51.93 -0.40 0.48 16 34 H 0.20 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 1.61 5.86 -51.92 -0.30 1.31 16 38 H 0.08 1.25 7.70 -51.93 -0.40 0.85 16 39 H 0.08 1.79 6.12 -51.93 -0.32 1.48 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.10 2.83 5.92 -51.93 -0.31 2.53 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 1.78 6.30 -51.93 -0.33 1.45 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -32.29 366.97 -8.92 -41.22 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.02 Total: 0.69 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -0.43 Total: 1.96 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.46 Total: -56.94 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.05 Total: -9.70 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -1.58 Total: 0.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.29 -8.92 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690132981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.178 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds