Wall clock time and date at job start Tue Mar 31 2020 19:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 N 1.46492 * 109.47086 * 179.97438 * 3 2 1 5 5 C 1.34779 * 120.00330 * 277.22134 * 4 3 2 6 6 O 1.21690 * 119.99943 * 177.25227 * 5 4 3 7 7 C 1.46686 * 119.99806 * 357.24594 * 5 4 3 8 8 S 1.76214 * 126.13077 * 7.72352 * 7 5 4 9 9 C 1.70951 * 90.31173 * 179.97438 * 8 7 5 10 10 N 1.29428 * 110.39098 * 0.34614 * 9 8 7 11 11 C 1.30941 * 117.36690 * 359.72527 * 10 9 8 12 12 C 1.50692 * 122.90344 * 179.97438 * 11 10 9 13 13 C 1.46505 * 119.99783 * 97.22239 * 4 3 2 14 14 C 1.53041 * 109.45780 * 240.06498 * 13 4 3 15 15 C 1.53194 * 109.31288 * 178.61463 * 14 13 4 16 16 N 1.46922 * 108.77621 * 54.63434 * 15 14 13 17 17 C 1.36932 * 120.63085 * 126.41311 * 16 15 14 18 18 H 1.08002 * 120.00159 * 324.58864 * 17 16 15 19 19 C 1.38814 * 120.00352 * 144.58626 * 17 16 15 20 20 N 1.31620 * 119.99542 * 4.12872 * 19 17 16 21 21 Si 1.86797 * 120.00544 * 184.12906 * 19 17 16 22 22 H 1.48501 * 109.46860 * 59.99660 * 21 19 17 23 23 H 1.48497 * 109.47350 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47208 * 300.00155 * 21 19 17 25 25 C 1.46923 * 118.74025 * 306.39617 * 16 15 14 26 26 C 1.53042 * 109.46228 * 120.00021 * 13 4 3 27 27 H 1.08997 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47058 * 299.99956 * 1 2 3 29 29 H 1.08999 * 109.47397 * 59.99879 * 1 2 3 30 30 H 1.08999 * 109.47377 * 240.00414 * 2 1 3 31 31 H 1.08999 * 109.47397 * 120.00121 * 2 1 3 32 32 H 1.08999 * 109.46656 * 59.99972 * 3 2 1 33 33 H 1.08999 * 109.47083 * 300.00313 * 3 2 1 34 34 H 1.07997 * 124.80141 * 180.11130 * 9 8 7 35 35 H 1.09004 * 109.47528 * 269.99916 * 12 11 10 36 36 H 1.09003 * 109.47559 * 30.00799 * 12 11 10 37 37 H 1.09007 * 109.46788 * 150.00318 * 12 11 10 38 38 H 1.08995 * 109.45013 * 0.03277 * 13 4 3 39 39 H 1.08999 * 109.49723 * 298.56652 * 14 13 4 40 40 H 1.08999 * 109.49972 * 58.66223 * 14 13 4 41 41 H 1.09000 * 109.58322 * 294.84980 * 15 14 13 42 42 H 1.08997 * 109.70453 * 174.49744 * 15 14 13 43 43 H 0.97003 * 120.00219 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58497 * 293.81822 * 25 16 15 45 45 H 1.09001 * 109.70578 * 173.46204 * 25 16 15 46 46 H 1.09002 * 109.49569 * 301.33687 * 26 13 4 47 47 H 1.08999 * 109.49764 * 61.39781 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1784 1.2960 1.1588 6 8 5.3942 1.2458 1.1535 7 6 3.4457 1.1971 2.4258 8 16 1.6984 1.0592 2.6075 9 6 1.8696 1.0128 4.3078 10 7 3.1178 1.1026 4.6380 11 6 3.9914 1.2025 3.6678 12 6 5.4745 1.3145 3.9100 13 6 4.2379 1.6019 -1.2578 14 6 5.1165 0.3715 -1.4953 15 6 5.8550 0.5260 -2.8286 16 7 6.5890 1.7986 -2.8180 17 6 7.9306 1.8325 -3.0899 18 1 8.5678 1.0227 -2.7664 19 6 8.4718 2.9077 -3.7814 20 7 7.7113 3.9322 -4.1045 21 14 10.2791 2.9005 -4.2533 22 1 10.5573 1.7340 -5.1291 23 1 10.6060 4.1536 -4.9800 24 1 11.1107 2.8078 -3.0265 25 6 5.8561 3.0343 -2.5105 26 6 5.1177 2.8518 -1.1808 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.0516 0.9250 5.0075 35 1 5.7498 2.3654 3.9996 36 1 5.7329 0.7913 4.8307 37 1 6.0138 0.8677 3.0746 38 1 3.5296 1.7064 -2.0797 39 1 5.8414 0.2805 -0.6864 40 1 4.4918 -0.5211 -1.5268 41 1 5.1351 0.5262 -3.6471 42 1 6.5555 -0.2989 -2.9585 43 1 8.0893 4.6834 -4.5880 44 1 5.1363 3.2391 -3.3030 45 1 6.5559 3.8660 -2.4286 46 1 4.4937 3.7245 -0.9883 47 1 5.8422 2.7376 -0.3744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690132981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:32 Heat of formation + Delta-G solvation = 19.061451 kcal Electronic energy + Delta-G solvation = -28439.036943 eV Core-core repulsion = 24748.851168 eV Total energy + Delta-G solvation = -3690.185775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69220 -40.61419 -38.59552 -37.35136 -35.08544 -33.54529 -32.83992 -31.81353 -31.34503 -29.32989 -27.45009 -26.65834 -25.83120 -24.37038 -23.83133 -22.81089 -21.91051 -21.00534 -19.69162 -19.31247 -18.56123 -17.73690 -17.18596 -16.90980 -16.50360 -16.21402 -15.79214 -15.49097 -15.44891 -15.27445 -14.88694 -14.77217 -14.46104 -14.35531 -14.13277 -13.99336 -13.70989 -13.44393 -13.32278 -13.05200 -12.92939 -12.77051 -12.64821 -12.57719 -12.43400 -12.28489 -12.12745 -11.96956 -11.82325 -11.81910 -11.43676 -11.33124 -10.76137 -10.55166 -10.41433 -10.34767 -9.82989 -9.49296 -8.54529 -7.86172 -5.41650 -0.72962 0.24906 0.65353 1.44877 1.45516 1.47689 1.54320 1.86857 2.11921 2.49896 3.21137 3.28591 3.44217 3.71494 3.79426 3.92474 3.98295 4.07623 4.15166 4.22093 4.31361 4.33733 4.51008 4.54450 4.57630 4.64298 4.70306 4.75699 4.81339 4.84477 4.88979 4.94734 4.98345 5.07766 5.16553 5.19741 5.26103 5.30297 5.44410 5.48672 5.58180 5.62388 5.66980 5.83002 6.34014 6.46834 6.66582 7.10709 7.18678 7.86618 8.39671 9.17263 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.003398 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.820401 B = 8239.109970 C = 9254.712694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C 0.089 3.911 4 N -0.601 5.601 5 C 0.585 3.415 6 O -0.548 6.548 7 C -0.337 4.337 8 S 0.279 5.721 9 C -0.004 4.004 10 N -0.509 5.509 11 C 0.132 3.868 12 C -0.091 4.091 13 C 0.173 3.827 14 C -0.133 4.133 15 C 0.149 3.851 16 N -0.611 5.611 17 C -0.268 4.268 18 H 0.056 0.944 19 C -0.041 4.041 20 N -0.931 5.931 21 Si 0.968 3.032 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.281 1.281 25 C 0.181 3.819 26 C -0.141 4.141 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.237 0.763 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.028 0.972 42 H 0.050 0.950 43 H 0.251 0.749 44 H 0.005 0.995 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.859 -6.921 13.444 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.187 4.187 3 C -0.035 4.035 4 N -0.332 5.332 5 C 0.374 3.626 6 O -0.428 6.428 7 C -0.460 4.460 8 S 0.537 5.463 9 C -0.297 4.297 10 N -0.224 5.224 11 C -0.007 4.007 12 C -0.150 4.150 13 C 0.071 3.929 14 C -0.173 4.173 15 C 0.023 3.977 16 N -0.335 5.335 17 C -0.398 4.398 18 H 0.074 0.926 19 C -0.237 4.237 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.215 1.215 24 H -0.207 1.207 25 C 0.055 3.945 26 C -0.181 4.181 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.253 0.747 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.023 0.977 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.995 -6.854 13.273 26.588 hybrid contribution 2.262 0.393 -0.066 2.297 sum -19.734 -6.461 13.207 24.608 Atomic orbital electron populations 1.21726 0.92207 1.03239 1.03057 1.22151 0.98600 0.95215 1.02696 1.22338 0.77838 0.99072 1.04222 1.48116 1.07492 1.71458 1.06135 1.17115 0.86418 0.76436 0.82666 1.90787 1.14420 1.51178 1.86378 1.25574 0.99714 1.22719 0.98028 1.84107 0.99007 1.63046 1.00134 1.29940 0.97470 0.98475 1.03802 1.66273 1.02008 1.18099 1.36065 1.20761 0.98320 0.95144 0.86469 1.20597 0.87561 1.03154 1.03700 1.20901 0.93108 0.94765 0.84154 1.22260 0.98985 0.97050 0.99006 1.20977 0.94171 0.88267 0.94269 1.44201 1.05328 1.02658 1.81313 1.19376 0.85160 1.06490 1.28817 0.92647 1.25998 1.02275 0.97505 0.97923 1.70057 1.36313 1.08041 1.43218 0.85355 0.80139 0.76937 0.78061 1.20011 1.21457 1.20733 1.20638 0.93281 0.90019 0.90538 1.22407 0.98741 0.96791 1.00123 0.91245 0.91281 0.91294 0.91234 0.92070 0.89750 0.86757 0.74666 0.90564 0.89821 0.90022 0.88088 0.92787 0.90800 0.95426 0.93188 0.93941 0.97680 0.91921 0.92337 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.78 71.98 0.70 -0.47 16 2 C -0.15 -2.10 5.19 30.60 0.16 -1.94 16 3 C 0.09 1.56 4.96 86.38 0.43 1.99 16 4 N -0.60 -16.72 2.44 -802.35 -1.96 -18.68 16 5 C 0.59 19.03 6.98 86.45 0.60 19.63 16 6 O -0.55 -22.54 10.51 -4.32 -0.05 -22.58 16 7 C -0.34 -8.89 6.12 23.88 0.15 -8.75 16 8 S 0.28 4.08 14.71 -56.49 -0.83 3.25 16 9 C 0.00 -0.06 12.22 130.60 1.60 1.53 16 10 N -0.51 -12.18 10.50 -190.41 -2.00 -14.18 16 11 C 0.13 3.65 6.79 42.09 0.29 3.94 16 12 C -0.09 -2.60 9.80 71.23 0.70 -1.90 16 13 C 0.17 5.82 2.51 45.02 0.11 5.93 16 14 C -0.13 -4.95 5.27 30.67 0.16 -4.79 16 15 C 0.15 6.47 6.52 86.36 0.56 7.03 16 16 N -0.61 -32.42 3.00 -699.12 -2.10 -34.51 16 17 C -0.27 -15.62 9.55 84.03 0.80 -14.82 16 18 H 0.06 3.22 7.83 -2.91 -0.02 3.20 16 19 C -0.04 -2.39 5.32 84.86 0.45 -1.94 16 20 N -0.93 -55.79 10.62 21.65 0.23 -55.56 16 21 Si 0.97 46.45 29.56 68.60 2.03 48.47 16 22 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 25 C 0.18 9.17 5.26 86.36 0.45 9.63 16 26 C -0.14 -5.87 5.27 30.67 0.16 -5.71 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.38 7.18 -2.39 -0.02 0.37 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 0.98 6.14 -4.24 -0.03 0.96 16 32 H 0.09 1.30 4.39 -21.29 -0.09 1.20 16 33 H 0.11 1.65 7.77 -2.39 -0.02 1.63 16 34 H 0.24 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 2.73 5.86 -2.38 -0.01 2.71 16 38 H 0.10 2.99 7.70 -2.39 -0.02 2.97 16 39 H 0.05 2.38 6.12 -2.39 -0.01 2.37 16 40 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.06 3.66 5.92 -2.39 -0.01 3.65 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.05 2.25 6.30 -2.39 -0.02 2.23 16 Total: -1.00 -74.89 366.97 3.53 -71.36 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.88 Total: 13.07 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 7.33 Total: 9.36 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -5.82 Total: -122.93 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -0.83 Total: 3.25 kcal Total: -74.89 3.53 -71.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690132981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.421 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds