Wall clock time and date at job start Tue Mar 31 2020 19:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47332 * 2 1 4 4 N 1.46501 * 109.47301 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99541 * 270.63892 * 4 3 2 6 6 O 1.21685 * 119.99407 * 185.85559 * 5 4 3 7 7 C 1.46679 * 119.99982 * 5.85063 * 5 4 3 8 8 S 1.76214 * 126.13503 * 7.43908 * 7 5 4 9 9 C 1.70941 * 90.31492 * 179.97438 * 8 7 5 10 10 N 1.29431 * 110.39639 * 359.97438 * 9 8 7 11 11 C 1.30942 * 117.35828 * 359.73172 * 10 9 8 12 12 C 1.50700 * 122.90322 * 180.30739 * 11 10 9 13 13 C 1.52998 * 109.47104 * 270.19001 * 12 11 10 14 14 C 1.46497 * 120.00136 * 90.63726 * 4 3 2 15 15 H 1.08994 * 110.88547 * 356.12031 * 14 4 3 16 16 C 1.55152 * 111.00376 * 120.00205 * 14 4 3 17 17 C 1.54321 * 102.94506 * 153.57368 * 16 14 4 18 18 N 1.47028 * 107.27131 * 337.80768 * 17 16 14 19 19 C 1.36927 * 125.64788 * 178.95936 * 18 17 16 20 20 H 1.08007 * 119.99720 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00376 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00221 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00386 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46937 * 60.00004 * 23 21 19 25 25 H 1.48500 * 109.47199 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47174 * 300.00455 * 23 21 19 27 27 C 1.47420 * 108.70005 * 358.93786 * 18 17 16 28 28 H 1.08994 * 109.46938 * 60.00254 * 1 2 3 29 29 H 1.09002 * 109.46637 * 300.00070 * 1 2 3 30 30 H 1.08996 * 109.46886 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46945 * 119.99777 * 2 1 3 32 32 H 1.08999 * 109.47336 * 239.99741 * 2 1 3 33 33 H 1.09004 * 109.46923 * 299.99791 * 3 2 1 34 34 H 1.08999 * 109.47122 * 59.99610 * 3 2 1 35 35 H 1.08006 * 124.80520 * 179.97438 * 9 8 7 36 36 H 1.09001 * 109.47434 * 30.19429 * 12 11 10 37 37 H 1.08998 * 109.47020 * 150.19266 * 12 11 10 38 38 H 1.09008 * 109.47100 * 60.00187 * 13 12 11 39 39 H 1.08994 * 109.47563 * 179.97438 * 13 12 11 40 40 H 1.09001 * 109.47324 * 300.00496 * 13 12 11 41 41 H 1.09001 * 110.72056 * 271.93909 * 16 14 4 42 42 H 1.09007 * 110.72387 * 35.03140 * 16 14 4 43 43 H 1.09002 * 109.88022 * 97.22306 * 17 16 14 44 44 H 1.08995 * 109.88459 * 218.23252 * 17 16 14 45 45 H 0.96992 * 120.00633 * 179.97438 * 22 21 19 46 46 H 1.09001 * 110.36931 * 265.29181 * 27 18 17 47 47 H 1.08998 * 110.36954 * 142.96930 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1794 1.4293 1.1663 6 8 5.3915 1.5368 1.1698 7 6 3.4522 1.2855 2.4320 8 16 1.7341 0.9365 2.6094 9 6 1.8926 0.9736 4.3110 10 7 3.1180 1.2233 4.6446 11 6 3.9831 1.3905 3.6760 12 6 5.4416 1.6795 3.9219 13 6 5.6548 3.1923 4.0044 14 6 4.2371 1.4568 -1.2695 15 1 3.5511 1.3974 -2.1145 16 6 5.1423 2.7124 -1.3752 17 6 6.2653 2.2498 -2.3273 18 7 6.3049 0.7810 -2.2745 19 6 7.1516 -0.0207 -2.9923 20 1 7.1019 -1.0940 -2.8820 21 6 8.0736 0.5457 -3.8616 22 7 8.1345 1.8537 -3.9956 23 14 9.2292 -0.5481 -4.8402 24 1 8.4356 -1.4597 -5.7032 25 1 10.1097 0.2953 -5.6880 26 1 10.0612 -1.3494 -3.9071 27 6 5.2824 0.3146 -1.3204 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.0845 0.8116 5.0092 36 1 5.7506 1.2173 4.8594 37 1 6.0356 1.2731 3.1033 38 1 5.0608 3.5989 4.8231 39 1 6.7095 3.4015 4.1827 40 1 5.3458 3.6546 3.0669 41 1 4.5923 3.5493 -1.8055 42 1 5.5466 2.9798 -0.3988 43 1 6.0483 2.5785 -3.3437 44 1 7.2206 2.6607 -2.0010 45 1 8.7790 2.2496 -4.6027 46 1 5.7243 0.1606 -0.3360 47 1 4.8213 -0.6059 -1.6784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691853492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:28 Heat of formation + Delta-G solvation = 47.256964 kcal Electronic energy + Delta-G solvation = -28437.669645 eV Core-core repulsion = 24748.706520 eV Total energy + Delta-G solvation = -3688.963126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59249 -39.58303 -36.77247 -36.18316 -33.56222 -32.99715 -31.91424 -30.05142 -28.95284 -27.43384 -26.51966 -25.66343 -24.39816 -23.28485 -22.35895 -21.60132 -20.07978 -19.99852 -18.65016 -18.08362 -16.87046 -16.82621 -16.22148 -15.38978 -15.11663 -15.02705 -14.52232 -14.41238 -14.19370 -13.98364 -13.93212 -13.54736 -13.38670 -13.08467 -12.66945 -12.36178 -12.25420 -12.23406 -11.92249 -11.90448 -11.69071 -11.59428 -11.28909 -11.16624 -10.88945 -10.85467 -10.80031 -10.66379 -10.28528 -10.07709 -9.93538 -9.71161 -9.60950 -9.38782 -9.16447 -8.87528 -8.54914 -8.36157 -6.71261 -5.62749 -2.95514 0.17642 1.11749 1.49291 2.43006 2.98302 3.24198 3.45579 3.49778 3.51117 4.03329 4.43038 4.57000 4.60665 4.73128 4.89135 4.96381 5.02447 5.15405 5.31516 5.41056 5.41870 5.45433 5.49725 5.52904 5.56178 5.63818 5.76370 5.79519 5.82763 5.89013 5.96957 6.04316 6.06290 6.20450 6.25689 6.39867 6.50728 6.61279 6.66083 6.75431 7.17987 7.44121 7.58379 7.64197 7.74837 7.91185 8.27909 8.34987 9.30326 9.90660 10.57444 11.48833 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003622 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.117305 B = 7729.062018 C = 8827.090015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.153 4.153 3 C 0.096 3.904 4 N -0.599 5.599 5 C 0.590 3.410 6 O -0.493 6.493 7 C -0.294 4.294 8 S 0.196 5.804 9 C -0.012 4.012 10 N -0.477 5.477 11 C 0.146 3.854 12 C -0.065 4.065 13 C -0.135 4.135 14 C 0.134 3.866 15 H 0.094 0.906 16 C -0.155 4.155 17 C 0.186 3.814 18 N -0.600 5.600 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.128 3.872 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.196 0.804 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.252 0.748 46 H 0.044 0.956 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.113 0.416 14.149 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C -0.029 4.029 4 N -0.331 5.331 5 C 0.376 3.624 6 O -0.369 6.369 7 C -0.418 4.418 8 S 0.453 5.547 9 C -0.306 4.306 10 N -0.191 5.191 11 C 0.008 3.992 12 C -0.104 4.104 13 C -0.193 4.193 14 C 0.031 3.969 15 H 0.112 0.888 16 C -0.194 4.194 17 C 0.061 3.939 18 N -0.327 5.327 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.001 3.999 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.212 0.788 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.056 0.357 13.916 23.599 hybrid contribution 1.114 -0.423 -0.241 1.215 sum -17.942 -0.065 13.675 22.559 Atomic orbital electron populations 1.21724 0.94597 1.02318 1.01924 1.22197 0.96670 0.96933 1.03473 1.21989 0.80350 0.97509 1.03082 1.47802 1.05816 1.73311 1.06153 1.16722 0.86684 0.77504 0.81484 1.90840 1.12408 1.48019 1.85639 1.25737 0.97136 1.19510 0.99391 1.84657 1.05843 1.62810 1.01342 1.29136 0.97842 1.01554 1.02036 1.66209 1.01144 1.15470 1.36250 1.20726 0.97824 0.94889 0.85722 1.20489 0.87721 0.98014 1.04223 1.21587 1.01816 0.94251 1.01645 1.22460 0.93360 0.98717 0.82402 0.88833 1.23278 0.98263 0.95704 1.02157 1.21045 0.94023 0.83494 0.95385 1.44290 1.38864 1.02135 1.47435 1.18989 1.10537 0.89327 1.16442 0.90645 1.24774 0.99613 0.95927 1.00122 1.69954 1.38378 1.08305 1.40374 0.86210 0.80661 0.79220 0.79729 1.21264 1.21630 1.21224 1.21838 0.89535 0.93508 0.95034 0.92174 0.92583 0.92042 0.91041 0.90346 0.88875 0.90371 0.78751 0.90539 0.87122 0.93168 0.91743 0.92505 0.92727 0.90441 0.93800 0.93885 0.93798 0.93880 0.95004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.76 37.16 0.36 -0.58 16 2 C -0.15 -1.39 5.24 -26.73 -0.14 -1.53 16 3 C 0.10 0.98 4.88 -4.04 -0.02 0.96 16 4 N -0.60 -8.76 2.56 -165.20 -0.42 -9.19 16 5 C 0.59 9.55 6.88 -12.85 -0.09 9.47 16 6 O -0.49 -9.69 10.32 5.20 0.05 -9.64 16 7 C -0.29 -3.99 6.20 -37.10 -0.23 -4.22 16 8 S 0.20 1.77 14.57 -107.50 -1.57 0.20 16 9 C -0.01 -0.11 12.22 51.75 0.63 0.52 16 10 N -0.48 -6.06 10.50 -11.53 -0.12 -6.18 16 11 C 0.15 2.03 6.04 -83.89 -0.51 1.52 16 12 C -0.06 -0.90 5.84 -27.88 -0.16 -1.06 16 13 C -0.14 -1.72 9.89 37.16 0.37 -1.35 16 14 C 0.13 2.38 3.54 -65.78 -0.23 2.15 16 15 H 0.09 1.54 7.91 -51.93 -0.41 1.13 16 16 C -0.15 -3.10 6.32 -24.90 -0.16 -3.26 16 17 C 0.19 4.71 5.37 -3.06 -0.02 4.70 16 18 N -0.60 -15.99 3.39 -170.07 -0.58 -16.57 16 19 C -0.22 -6.48 10.28 -15.07 -0.15 -6.63 16 20 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -27.76 10.31 55.49 0.57 -27.19 16 23 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.13 2.81 6.58 -2.53 -0.02 2.80 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.30 7.24 -51.93 -0.38 -0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.70 5.94 -41.25 -0.25 0.45 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.84 7.97 -51.93 -0.41 0.42 16 34 H 0.08 0.72 4.65 -24.60 -0.11 0.61 16 35 H 0.20 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 1.77 5.87 -51.93 -0.30 1.46 16 38 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.63 6.05 -51.92 -0.31 1.32 16 43 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 44 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.04 1.03 5.74 -51.93 -0.30 0.73 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -33.72 370.81 -8.98 -42.70 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.02 Total: -0.49 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.46 Total: 3.15 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.55 Total: -59.13 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.05 Total: -9.64 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.57 Total: 0.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.72 -8.98 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691853492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.953 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds