Wall clock time and date at job start Tue Mar 31 2020 19:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47332 * 2 1 4 4 N 1.46501 * 109.47301 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99541 * 270.63892 * 4 3 2 6 6 O 1.21685 * 119.99407 * 185.85559 * 5 4 3 7 7 C 1.46679 * 119.99982 * 5.85063 * 5 4 3 8 8 S 1.76214 * 126.13503 * 7.43908 * 7 5 4 9 9 C 1.70941 * 90.31492 * 179.97438 * 8 7 5 10 10 N 1.29431 * 110.39639 * 359.97438 * 9 8 7 11 11 C 1.30942 * 117.35828 * 359.73172 * 10 9 8 12 12 C 1.50700 * 122.90322 * 180.30739 * 11 10 9 13 13 C 1.52998 * 109.47104 * 270.19001 * 12 11 10 14 14 C 1.46497 * 120.00136 * 90.63726 * 4 3 2 15 15 H 1.08994 * 110.88547 * 356.12031 * 14 4 3 16 16 C 1.55152 * 111.00376 * 120.00205 * 14 4 3 17 17 C 1.54321 * 102.94506 * 153.57368 * 16 14 4 18 18 N 1.47028 * 107.27131 * 337.80768 * 17 16 14 19 19 C 1.36927 * 125.64788 * 178.95936 * 18 17 16 20 20 H 1.08007 * 119.99720 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00376 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00221 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00386 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46937 * 60.00004 * 23 21 19 25 25 H 1.48500 * 109.47199 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47174 * 300.00455 * 23 21 19 27 27 C 1.47420 * 108.70005 * 358.93786 * 18 17 16 28 28 H 1.08994 * 109.46938 * 60.00254 * 1 2 3 29 29 H 1.09002 * 109.46637 * 300.00070 * 1 2 3 30 30 H 1.08996 * 109.46886 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46945 * 119.99777 * 2 1 3 32 32 H 1.08999 * 109.47336 * 239.99741 * 2 1 3 33 33 H 1.09004 * 109.46923 * 299.99791 * 3 2 1 34 34 H 1.08999 * 109.47122 * 59.99610 * 3 2 1 35 35 H 1.08006 * 124.80520 * 179.97438 * 9 8 7 36 36 H 1.09001 * 109.47434 * 30.19429 * 12 11 10 37 37 H 1.08998 * 109.47020 * 150.19266 * 12 11 10 38 38 H 1.09008 * 109.47100 * 60.00187 * 13 12 11 39 39 H 1.08994 * 109.47563 * 179.97438 * 13 12 11 40 40 H 1.09001 * 109.47324 * 300.00496 * 13 12 11 41 41 H 1.09001 * 110.72056 * 271.93909 * 16 14 4 42 42 H 1.09007 * 110.72387 * 35.03140 * 16 14 4 43 43 H 1.09002 * 109.88022 * 97.22306 * 17 16 14 44 44 H 1.08995 * 109.88459 * 218.23252 * 17 16 14 45 45 H 0.96992 * 120.00633 * 179.97438 * 22 21 19 46 46 H 1.09001 * 110.36931 * 265.29181 * 27 18 17 47 47 H 1.08998 * 110.36954 * 142.96930 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1794 1.4293 1.1663 6 8 5.3915 1.5368 1.1698 7 6 3.4522 1.2855 2.4320 8 16 1.7341 0.9365 2.6094 9 6 1.8926 0.9736 4.3110 10 7 3.1180 1.2233 4.6446 11 6 3.9831 1.3905 3.6760 12 6 5.4416 1.6795 3.9219 13 6 5.6548 3.1923 4.0044 14 6 4.2371 1.4568 -1.2695 15 1 3.5511 1.3974 -2.1145 16 6 5.1423 2.7124 -1.3752 17 6 6.2653 2.2498 -2.3273 18 7 6.3049 0.7810 -2.2745 19 6 7.1516 -0.0207 -2.9923 20 1 7.1019 -1.0940 -2.8820 21 6 8.0736 0.5457 -3.8616 22 7 8.1345 1.8537 -3.9956 23 14 9.2292 -0.5481 -4.8402 24 1 8.4356 -1.4597 -5.7032 25 1 10.1097 0.2953 -5.6880 26 1 10.0612 -1.3494 -3.9071 27 6 5.2824 0.3146 -1.3204 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.0845 0.8116 5.0092 36 1 5.7506 1.2173 4.8594 37 1 6.0356 1.2731 3.1033 38 1 5.0608 3.5989 4.8231 39 1 6.7095 3.4015 4.1827 40 1 5.3458 3.6546 3.0669 41 1 4.5923 3.5493 -1.8055 42 1 5.5466 2.9798 -0.3988 43 1 6.0483 2.5785 -3.3437 44 1 7.2206 2.6607 -2.0010 45 1 8.7790 2.2496 -4.6027 46 1 5.7243 0.1606 -0.3360 47 1 4.8213 -0.6059 -1.6784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691853492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:27 Heat of formation + Delta-G solvation = 25.586606 kcal Electronic energy + Delta-G solvation = -28438.609343 eV Core-core repulsion = 24748.706520 eV Total energy + Delta-G solvation = -3689.902823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73685 -40.65501 -38.44939 -37.32144 -34.81561 -34.30415 -33.37268 -31.45035 -30.62277 -29.01171 -27.39174 -26.91467 -26.12435 -24.30478 -23.51542 -22.54604 -21.99572 -21.34858 -19.61905 -19.28081 -18.75019 -17.97492 -17.21657 -16.79251 -16.44661 -16.30870 -15.99129 -15.73527 -15.40649 -15.24570 -14.90726 -14.74430 -14.54308 -14.34471 -14.16319 -13.76639 -13.67442 -13.49320 -13.10474 -12.98581 -12.90740 -12.77563 -12.72639 -12.47805 -12.32505 -12.09213 -12.07018 -12.01117 -11.90030 -11.84441 -11.79283 -11.60288 -10.71600 -10.71016 -10.41355 -10.33625 -9.81092 -9.54313 -8.86771 -7.84355 -5.20524 -0.72142 0.26091 0.67377 1.44021 1.45901 1.48736 1.54791 1.81230 2.11761 2.50346 3.20173 3.32533 3.44742 3.69664 3.78758 3.86978 3.95871 4.03910 4.10143 4.14746 4.22011 4.32079 4.37110 4.44615 4.51856 4.56352 4.59698 4.68124 4.72686 4.90612 4.92952 4.95316 4.99848 5.02694 5.08163 5.19874 5.21022 5.27688 5.33985 5.42159 5.49846 5.62718 5.66851 5.74512 6.18626 6.30652 6.68741 7.07983 7.10459 7.76196 8.41927 9.25821 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003622 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.117305 B = 7729.062018 C = 8827.090015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.151 4.151 3 C 0.088 3.912 4 N -0.596 5.596 5 C 0.585 3.415 6 O -0.541 6.541 7 C -0.335 4.335 8 S 0.279 5.721 9 C -0.003 4.003 10 N -0.506 5.506 11 C 0.140 3.860 12 C -0.066 4.066 13 C -0.126 4.126 14 C 0.156 3.844 15 H 0.119 0.881 16 C -0.140 4.140 17 C 0.196 3.804 18 N -0.621 5.621 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.981 3.019 24 H -0.272 1.272 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.126 3.874 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.020 0.980 44 H -0.005 1.005 45 H 0.247 0.753 46 H 0.023 0.977 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.923 -0.380 14.935 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.191 4.191 3 C -0.035 4.035 4 N -0.327 5.327 5 C 0.373 3.627 6 O -0.421 6.421 7 C -0.459 4.459 8 S 0.537 5.463 9 C -0.295 4.295 10 N -0.221 5.221 11 C 0.001 3.999 12 C -0.106 4.106 13 C -0.184 4.184 14 C 0.052 3.948 15 H 0.137 0.863 16 C -0.179 4.179 17 C 0.071 3.929 18 N -0.347 5.347 19 C -0.374 4.374 20 H 0.097 0.903 21 C -0.257 4.257 22 N -0.600 5.600 23 Si 0.809 3.191 24 H -0.197 1.197 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.000 4.000 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.254 0.746 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.013 0.987 45 H 0.056 0.944 46 H 0.041 0.959 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -22.952 -0.462 14.720 27.271 hybrid contribution 2.219 -0.221 -0.399 2.265 sum -20.733 -0.683 14.321 25.208 Atomic orbital electron populations 1.21720 0.92050 1.03223 1.03154 1.22177 0.98732 0.95582 1.02564 1.22360 0.77284 0.98925 1.04889 1.47776 1.07601 1.72849 1.04462 1.17142 0.86384 0.76514 0.82650 1.90821 1.14672 1.50030 1.86529 1.25544 1.00592 1.21857 0.97880 1.84188 1.01036 1.60821 1.00218 1.29910 0.97652 0.98475 1.03504 1.66256 1.02272 1.17478 1.36063 1.20701 0.97876 0.94950 0.86390 1.20386 0.88437 0.98477 1.03302 1.21505 1.02351 0.93581 1.00993 1.22070 0.92848 0.95019 0.84855 0.86323 1.23058 0.97140 0.97648 1.00061 1.20753 0.93823 0.83187 0.95144 1.44587 1.39745 1.02603 1.47802 1.19400 1.11327 0.89970 1.16743 0.90290 1.25668 1.01303 0.97362 1.01407 1.70189 1.38896 1.10003 1.40885 0.85124 0.78397 0.77466 0.78152 1.19719 1.21783 1.20774 1.21896 0.89706 0.95537 0.92851 0.91251 0.91071 0.91365 0.91861 0.91545 0.86693 0.88981 0.74617 0.89776 0.90055 0.91947 0.91203 0.94352 0.89798 0.91821 0.96202 0.98655 0.94357 0.95920 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.76 71.98 0.70 -0.51 16 2 C -0.15 -2.26 5.24 30.60 0.16 -2.10 16 3 C 0.09 1.54 4.88 86.38 0.42 1.96 16 4 N -0.60 -16.81 2.56 -794.79 -2.04 -18.84 16 5 C 0.58 19.18 6.88 86.45 0.59 19.77 16 6 O -0.54 -22.61 10.32 -4.30 -0.04 -22.66 16 7 C -0.33 -8.82 6.20 23.88 0.15 -8.67 16 8 S 0.28 4.03 14.57 -56.49 -0.82 3.21 16 9 C 0.00 -0.04 12.22 130.60 1.60 1.55 16 10 N -0.51 -11.87 10.50 -190.40 -2.00 -13.87 16 11 C 0.14 3.84 6.04 42.09 0.25 4.09 16 12 C -0.07 -1.92 5.84 29.85 0.17 -1.74 16 13 C -0.13 -3.34 9.89 71.98 0.71 -2.63 16 14 C 0.16 5.49 3.54 46.38 0.16 5.65 16 15 H 0.12 3.62 7.91 -2.39 -0.02 3.61 16 16 C -0.14 -5.71 6.32 31.78 0.20 -5.51 16 17 C 0.20 10.49 5.37 86.73 0.47 10.96 16 18 N -0.62 -34.37 3.39 -691.99 -2.35 -36.72 16 19 C -0.25 -14.60 10.28 84.03 0.86 -13.73 16 20 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 21 C -0.06 -3.83 5.49 84.86 0.47 -3.37 16 22 N -0.95 -59.61 10.31 21.65 0.22 -59.38 16 23 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 26 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 27 C 0.13 5.70 6.58 86.86 0.57 6.27 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.38 7.24 -2.39 -0.02 0.37 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 1.05 5.94 -9.17 -0.05 1.00 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.58 7.97 -2.38 -0.02 1.56 16 34 H 0.09 1.35 4.65 -19.76 -0.09 1.26 16 35 H 0.24 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.08 2.84 5.87 -2.39 -0.01 2.83 16 38 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.06 2.80 6.05 -2.38 -0.01 2.79 16 43 H 0.02 1.14 7.38 -2.39 -0.02 1.12 16 44 H 0.00 -0.30 7.50 -2.39 -0.02 -0.32 16 45 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.02 1.15 5.74 -2.39 -0.01 1.13 16 47 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -79.30 370.81 3.35 -75.96 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.85 Total: 10.78 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 7.50 Total: 12.01 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -6.16 Total: -128.82 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.04 Total: -22.66 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -0.82 Total: 3.21 kcal Total: -79.30 3.35 -75.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691853492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.543 kcal (2) G-P(sol) polarization free energy of solvation -79.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds