Wall clock time and date at job start Tue Mar 31 2020 19:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47581 * 2 1 4 4 H 1.08998 * 110.00166 * 56.17978 * 3 2 1 5 5 C 1.54325 * 109.88491 * 295.08799 * 3 2 1 6 6 H 1.09010 * 110.86828 * 336.82253 * 5 3 2 7 7 N 1.46495 * 110.72071 * 100.02128 * 5 3 2 8 8 C 1.34779 * 120.00215 * 199.97697 * 7 5 3 9 9 O 1.21283 * 119.99983 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00454 * 180.02562 * 8 7 5 11 11 C 1.52991 * 109.47395 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47395 * 179.97438 * 11 10 8 13 13 C 1.33636 * 122.74939 * 124.99870 * 12 11 10 14 14 S 1.76199 * 107.92362 * 180.02562 * 13 12 11 15 15 C 1.70971 * 90.28252 * 359.97438 * 14 13 12 16 16 C 1.50700 * 124.91645 * 179.97438 * 15 14 13 17 17 N 1.29025 * 110.16804 * 0.24320 * 15 14 13 18 18 C 1.55156 * 102.94581 * 218.38802 * 5 3 2 19 19 C 1.54916 * 101.57917 * 35.50067 * 18 5 3 20 20 N 1.47022 * 109.88726 * 177.27833 * 3 2 1 21 21 C 1.36942 * 125.64611 * 298.39664 * 20 3 2 22 22 H 1.07998 * 120.00022 * 348.07169 * 21 20 3 23 23 C 1.38810 * 119.99515 * 168.07251 * 21 20 3 24 24 N 1.31615 * 120.00362 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99650 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47260 * 89.99808 * 25 23 21 27 27 H 1.48501 * 109.47122 * 210.00507 * 25 23 21 28 28 H 1.48503 * 109.47024 * 329.99934 * 25 23 21 29 29 H 1.08991 * 109.47683 * 185.49340 * 1 2 3 30 30 H 1.09001 * 109.46902 * 305.49851 * 1 2 3 31 31 H 1.09002 * 109.47019 * 65.49071 * 1 2 3 32 32 H 1.09005 * 109.46949 * 239.99957 * 2 1 3 33 33 H 1.09003 * 109.46948 * 120.00337 * 2 1 3 34 34 H 0.97004 * 119.99948 * 19.98148 * 7 5 3 35 35 H 1.09004 * 109.46519 * 60.00007 * 10 8 7 36 36 H 1.08998 * 109.46654 * 300.00512 * 10 8 7 37 37 H 1.09004 * 109.47635 * 59.99818 * 11 10 8 38 38 H 1.09007 * 109.47434 * 300.00033 * 11 10 8 39 39 H 1.08000 * 126.03878 * 359.96814 * 13 12 11 40 40 H 1.08998 * 109.47186 * 0.02562 * 16 15 14 41 41 H 1.08999 * 109.47136 * 120.02807 * 16 15 14 42 42 H 1.09004 * 109.47209 * 240.02762 * 16 15 14 43 43 H 1.08996 * 111.00674 * 153.57232 * 18 5 3 44 44 H 1.09000 * 111.00260 * 277.42667 * 18 5 3 45 45 H 1.09000 * 110.36818 * 81.82963 * 19 18 5 46 46 H 1.09003 * 110.36617 * 204.04366 * 19 18 5 47 47 H 0.97002 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6269 1.9840 0.8509 5 6 1.6349 2.1424 -1.3143 6 1 1.4544 1.4124 -2.1035 7 7 0.4540 2.9849 -1.1102 8 6 -0.2984 3.3575 -2.1645 9 8 0.0019 2.9950 -3.2822 10 6 -1.5130 4.2247 -1.9546 11 6 -2.1830 4.4989 -3.3024 12 6 -3.3979 5.3655 -3.0925 13 6 -3.5772 6.5258 -3.7308 14 16 -5.1119 7.2069 -3.1965 15 6 -5.3601 5.8634 -2.1686 16 6 -6.5604 5.6684 -1.2786 17 7 -4.3682 5.0434 -2.2610 18 6 2.8782 3.0104 -1.6434 19 6 4.0316 2.1007 -1.1514 20 7 3.5088 1.4535 0.0656 21 6 4.2658 0.9458 1.0877 22 1 3.7969 0.6654 2.0192 23 6 5.6358 0.7918 0.9262 24 7 6.2073 1.1341 -0.2090 25 14 6.6687 0.1000 2.3205 26 1 6.7388 -1.3783 2.1984 27 1 8.0389 0.6681 2.2506 28 1 6.0493 0.4604 3.6212 29 1 -0.3634 -1.0228 0.0984 30 1 -0.3633 0.5968 0.8367 31 1 -0.3633 0.4263 -0.9351 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.2135 3.2746 -0.2162 35 1 -1.2114 5.1682 -1.4997 36 1 -2.2157 3.7126 -1.2974 37 1 -2.4845 3.5551 -3.7571 38 1 -1.4803 5.0108 -3.9601 39 1 -2.9006 6.9683 -4.4468 40 1 -7.2395 6.5131 -1.3942 41 1 -7.0741 4.7484 -1.5578 42 1 -6.2359 5.6025 -0.2401 43 1 2.9547 3.1929 -2.7152 44 1 2.8572 3.9488 -1.0894 45 1 4.2722 1.3517 -1.9059 46 1 4.9124 2.6983 -0.9167 47 1 7.1648 1.0267 -0.3216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692016183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:56 Heat of formation + Delta-G solvation = 15.516272 kcal Electronic energy + Delta-G solvation = -26663.153930 eV Core-core repulsion = 22972.814425 eV Total energy + Delta-G solvation = -3690.339506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34682 -39.58800 -37.71336 -34.14560 -33.92733 -32.73591 -31.83712 -31.31971 -29.04700 -28.57377 -26.74131 -25.40770 -24.17038 -22.77282 -22.01252 -20.47840 -20.07134 -19.98255 -19.36059 -17.79398 -16.89181 -16.77352 -15.96496 -15.59209 -15.29700 -15.14468 -14.73936 -14.14896 -14.08756 -13.86512 -13.73433 -13.53876 -13.33809 -13.09302 -12.81706 -12.66801 -12.57674 -12.03284 -11.97297 -11.90893 -11.69542 -11.61442 -11.16472 -11.11806 -10.87640 -10.83616 -10.57934 -10.42055 -10.24894 -10.06713 -9.93391 -9.73957 -9.70998 -9.62662 -9.52623 -8.97643 -8.62839 -8.53046 -6.81753 -5.73234 -3.09714 0.40079 1.04276 1.40714 2.46933 2.87123 3.38653 3.42175 3.45711 3.47175 3.73613 4.48150 4.56179 4.78741 4.83623 4.94393 4.99030 5.05699 5.11184 5.28211 5.35106 5.37636 5.44980 5.53286 5.54966 5.57147 5.76613 5.78191 5.83297 5.86796 5.90397 6.03990 6.08361 6.25806 6.35377 6.43804 6.48955 6.60711 6.71557 6.77092 6.96583 7.17536 7.45407 7.54589 7.60888 7.79287 7.81400 8.27618 8.48437 9.19209 9.80281 10.47386 11.37697 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.002048 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.878619 B =13671.519886 C =14088.028932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.091 0.909 7 N -0.715 5.715 8 C 0.512 3.488 9 O -0.546 6.546 10 C -0.132 4.132 11 C -0.027 4.027 12 C 0.076 3.924 13 C -0.259 4.259 14 S 0.106 5.894 15 C 0.050 3.950 16 C -0.077 4.077 17 N -0.469 5.469 18 C -0.156 4.156 19 C 0.172 3.828 20 N -0.595 5.595 21 C -0.226 4.226 22 H 0.076 0.924 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.911 3.089 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.178 0.822 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.025 0.975 46 H 0.079 0.921 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 11.939 -4.067 27.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.109 0.891 7 N -0.365 5.365 8 C 0.298 3.702 9 O -0.424 6.424 10 C -0.173 4.173 11 C -0.068 4.068 12 C -0.055 4.055 13 C -0.398 4.398 14 S 0.361 5.639 15 C -0.228 4.228 16 C -0.137 4.137 17 N -0.184 5.184 18 C -0.195 4.195 19 C 0.047 3.953 20 N -0.319 5.319 21 C -0.354 4.354 22 H 0.093 0.907 23 C -0.203 4.203 24 N -0.565 5.565 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.195 0.805 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.097 0.903 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -24.596 12.080 -4.727 27.807 hybrid contribution 1.273 -0.768 0.960 1.770 sum -23.323 11.311 -3.767 26.193 Atomic orbital electron populations 1.21765 0.97203 1.00488 1.00964 1.22014 0.93625 0.99172 1.02339 1.21067 0.86982 0.93339 0.93334 0.94751 1.22080 0.83630 0.92386 0.98512 0.89112 1.46099 1.28273 1.52419 1.09708 1.20540 0.84070 0.80706 0.84864 1.90694 1.71879 1.56132 1.23647 1.21555 0.95817 1.00580 0.99310 1.19925 0.90810 0.99041 0.97005 1.20352 0.96411 0.94495 0.94286 1.26847 1.02005 1.00848 1.10068 1.83970 1.16690 1.25239 1.38041 1.27083 0.99679 0.94225 1.01809 1.20437 0.91567 1.03609 0.98063 1.66055 1.01366 1.31129 1.19898 1.23416 0.96809 0.99029 1.00292 1.21487 0.93402 0.92975 0.87451 1.44466 0.98369 1.68337 1.20767 1.18955 0.89126 1.35387 0.91932 0.90652 1.24874 0.97013 1.01201 0.97163 1.69927 1.10057 1.52643 1.23832 0.86143 0.79753 0.78793 0.81199 1.21555 1.21702 1.20676 0.93710 0.93449 0.93268 0.92388 0.91797 0.76872 0.89227 0.88205 0.89231 0.89347 0.80475 0.90305 0.89330 0.89260 0.91940 0.92147 0.95727 0.90273 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.57 37.16 0.36 -1.83 16 2 C -0.13 -2.46 5.41 -26.74 -0.14 -2.61 16 3 C 0.16 3.20 2.94 -66.95 -0.20 3.00 16 4 H 0.03 0.67 7.68 -51.93 -0.40 0.27 16 5 C 0.14 2.51 1.92 -66.10 -0.13 2.38 16 6 H 0.09 1.80 7.34 -51.92 -0.38 1.42 16 7 N -0.71 -10.30 4.93 -52.03 -0.26 -10.56 16 8 C 0.51 7.36 7.83 -10.98 -0.09 7.27 16 9 O -0.55 -9.85 15.71 5.55 0.09 -9.77 16 10 C -0.13 -1.43 5.60 -27.89 -0.16 -1.58 16 11 C -0.03 -0.30 5.00 -27.89 -0.14 -0.43 16 12 C 0.08 0.79 6.08 -84.23 -0.51 0.28 16 13 C -0.26 -2.25 11.07 29.12 0.32 -1.93 16 14 S 0.11 0.78 23.17 -107.50 -2.49 -1.71 16 15 C 0.05 0.43 7.39 -13.46 -0.10 0.33 16 16 C -0.08 -0.39 10.47 36.01 0.38 -0.01 16 17 N -0.47 -5.05 10.34 -8.06 -0.08 -5.13 16 18 C -0.16 -3.09 6.77 -24.58 -0.17 -3.25 16 19 C 0.17 4.19 5.46 -2.53 -0.01 4.18 16 20 N -0.59 -14.75 3.13 -162.57 -0.51 -15.26 16 21 C -0.23 -6.12 9.77 -15.06 -0.15 -6.26 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 24 N -0.92 -26.71 10.47 55.49 0.58 -26.13 16 25 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.74 7.38 -51.93 -0.38 0.35 16 32 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 33 H 0.06 1.27 7.91 -51.93 -0.41 0.86 16 34 H 0.40 4.82 8.31 -40.82 -0.34 4.48 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.09 0.93 7.99 -51.93 -0.41 0.51 16 39 H 0.18 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.08 0.24 8.12 -51.93 -0.42 -0.18 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 46 H 0.08 2.14 6.73 -51.93 -0.35 1.79 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -32.31 394.38 -10.29 -42.60 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.71 Total: 3.89 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.83 Total: -0.73 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.27 Total: -57.08 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.49 Total: -1.71 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.31 -10.29 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692016183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.112 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds