Wall clock time and date at job start Tue Mar 31 2020 19:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47581 * 2 1 4 4 H 1.08998 * 110.00166 * 56.17978 * 3 2 1 5 5 C 1.54325 * 109.88491 * 295.08799 * 3 2 1 6 6 H 1.09010 * 110.86828 * 336.82253 * 5 3 2 7 7 N 1.46495 * 110.72071 * 100.02128 * 5 3 2 8 8 C 1.34779 * 120.00215 * 199.97697 * 7 5 3 9 9 O 1.21283 * 119.99983 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00454 * 180.02562 * 8 7 5 11 11 C 1.52991 * 109.47395 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47395 * 179.97438 * 11 10 8 13 13 C 1.33636 * 122.74939 * 124.99870 * 12 11 10 14 14 S 1.76199 * 107.92362 * 180.02562 * 13 12 11 15 15 C 1.70971 * 90.28252 * 359.97438 * 14 13 12 16 16 C 1.50700 * 124.91645 * 179.97438 * 15 14 13 17 17 N 1.29025 * 110.16804 * 0.24320 * 15 14 13 18 18 C 1.55156 * 102.94581 * 218.38802 * 5 3 2 19 19 C 1.54916 * 101.57917 * 35.50067 * 18 5 3 20 20 N 1.47022 * 109.88726 * 177.27833 * 3 2 1 21 21 C 1.36942 * 125.64611 * 298.39664 * 20 3 2 22 22 H 1.07998 * 120.00022 * 348.07169 * 21 20 3 23 23 C 1.38810 * 119.99515 * 168.07251 * 21 20 3 24 24 N 1.31615 * 120.00362 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99650 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47260 * 89.99808 * 25 23 21 27 27 H 1.48501 * 109.47122 * 210.00507 * 25 23 21 28 28 H 1.48503 * 109.47024 * 329.99934 * 25 23 21 29 29 H 1.08991 * 109.47683 * 185.49340 * 1 2 3 30 30 H 1.09001 * 109.46902 * 305.49851 * 1 2 3 31 31 H 1.09002 * 109.47019 * 65.49071 * 1 2 3 32 32 H 1.09005 * 109.46949 * 239.99957 * 2 1 3 33 33 H 1.09003 * 109.46948 * 120.00337 * 2 1 3 34 34 H 0.97004 * 119.99948 * 19.98148 * 7 5 3 35 35 H 1.09004 * 109.46519 * 60.00007 * 10 8 7 36 36 H 1.08998 * 109.46654 * 300.00512 * 10 8 7 37 37 H 1.09004 * 109.47635 * 59.99818 * 11 10 8 38 38 H 1.09007 * 109.47434 * 300.00033 * 11 10 8 39 39 H 1.08000 * 126.03878 * 359.96814 * 13 12 11 40 40 H 1.08998 * 109.47186 * 0.02562 * 16 15 14 41 41 H 1.08999 * 109.47136 * 120.02807 * 16 15 14 42 42 H 1.09004 * 109.47209 * 240.02762 * 16 15 14 43 43 H 1.08996 * 111.00674 * 153.57232 * 18 5 3 44 44 H 1.09000 * 111.00260 * 277.42667 * 18 5 3 45 45 H 1.09000 * 110.36818 * 81.82963 * 19 18 5 46 46 H 1.09003 * 110.36617 * 204.04366 * 19 18 5 47 47 H 0.97002 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6269 1.9840 0.8509 5 6 1.6349 2.1424 -1.3143 6 1 1.4544 1.4124 -2.1035 7 7 0.4540 2.9849 -1.1102 8 6 -0.2984 3.3575 -2.1645 9 8 0.0019 2.9950 -3.2822 10 6 -1.5130 4.2247 -1.9546 11 6 -2.1830 4.4989 -3.3024 12 6 -3.3979 5.3655 -3.0925 13 6 -3.5772 6.5258 -3.7308 14 16 -5.1119 7.2069 -3.1965 15 6 -5.3601 5.8634 -2.1686 16 6 -6.5604 5.6684 -1.2786 17 7 -4.3682 5.0434 -2.2610 18 6 2.8782 3.0104 -1.6434 19 6 4.0316 2.1007 -1.1514 20 7 3.5088 1.4535 0.0656 21 6 4.2658 0.9458 1.0877 22 1 3.7969 0.6654 2.0192 23 6 5.6358 0.7918 0.9262 24 7 6.2073 1.1341 -0.2090 25 14 6.6687 0.1000 2.3205 26 1 6.7388 -1.3783 2.1984 27 1 8.0389 0.6681 2.2506 28 1 6.0493 0.4604 3.6212 29 1 -0.3634 -1.0228 0.0984 30 1 -0.3633 0.5968 0.8367 31 1 -0.3633 0.4263 -0.9351 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.2135 3.2746 -0.2162 35 1 -1.2114 5.1682 -1.4997 36 1 -2.2157 3.7126 -1.2974 37 1 -2.4845 3.5551 -3.7571 38 1 -1.4803 5.0108 -3.9601 39 1 -2.9006 6.9683 -4.4468 40 1 -7.2395 6.5131 -1.3942 41 1 -7.0741 4.7484 -1.5578 42 1 -6.2359 5.6025 -0.2401 43 1 2.9547 3.1929 -2.7152 44 1 2.8572 3.9488 -1.0894 45 1 4.2722 1.3517 -1.9059 46 1 4.9124 2.6983 -0.9167 47 1 7.1648 1.0267 -0.3216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692016183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:55 Heat of formation + Delta-G solvation = -4.598949 kcal Electronic energy + Delta-G solvation = -26664.026192 eV Core-core repulsion = 22972.814425 eV Total energy + Delta-G solvation = -3691.211767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23463 -40.71213 -39.27871 -35.62036 -34.85651 -34.26779 -33.48549 -32.18843 -30.78734 -29.24706 -28.19597 -26.74685 -25.73190 -23.77691 -23.18755 -22.18231 -21.50433 -20.87216 -20.61467 -18.77685 -18.45739 -17.94507 -17.36708 -16.73942 -16.47802 -16.11457 -15.95097 -15.72042 -15.46455 -15.23504 -14.76725 -14.48020 -14.41652 -14.18794 -13.98476 -13.72755 -13.55241 -13.46703 -13.22223 -13.01165 -12.87686 -12.79246 -12.72784 -12.56725 -12.41745 -12.20353 -12.05465 -11.97937 -11.95330 -11.88359 -11.55645 -11.35173 -10.83691 -10.67854 -10.56613 -10.32405 -9.94874 -9.60299 -8.85026 -7.83910 -5.22192 -0.21133 0.46873 0.78957 1.46963 1.48658 1.57033 1.70498 1.77375 2.22274 2.52334 3.15633 3.34689 3.56119 3.80209 3.84986 3.92766 4.00733 4.10067 4.19758 4.24682 4.36559 4.39694 4.41702 4.54163 4.61649 4.64202 4.66801 4.70995 4.72357 4.76221 4.89500 4.98082 5.02993 5.06380 5.12402 5.17240 5.19462 5.30823 5.34043 5.46804 5.51180 5.57697 5.68912 5.72911 6.23644 6.63162 6.82149 7.09287 7.32609 7.77153 8.43622 9.26334 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.002048 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.878619 B =13671.519886 C =14088.028932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.158 3.842 4 H 0.053 0.947 5 C 0.157 3.843 6 H 0.074 0.926 7 N -0.704 5.704 8 C 0.515 3.485 9 O -0.583 6.583 10 C -0.117 4.117 11 C -0.023 4.023 12 C 0.058 3.942 13 C -0.268 4.268 14 S 0.146 5.854 15 C 0.039 3.961 16 C -0.077 4.077 17 N -0.499 5.499 18 C -0.141 4.141 19 C 0.179 3.821 20 N -0.614 5.614 21 C -0.230 4.230 22 H 0.084 0.916 23 C -0.066 4.066 24 N -0.951 5.951 25 Si 0.976 3.024 26 H -0.289 1.289 27 H -0.297 1.297 28 H -0.266 1.266 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.049 0.951 34 H 0.413 0.587 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.192 0.808 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.072 0.928 45 H -0.010 1.010 46 H 0.046 0.954 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.397 13.248 -2.664 30.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.051 3.949 4 H 0.071 0.929 5 C 0.051 3.949 6 H 0.092 0.908 7 N -0.355 5.355 8 C 0.303 3.697 9 O -0.463 6.463 10 C -0.157 4.157 11 C -0.064 4.064 12 C -0.073 4.073 13 C -0.407 4.407 14 S 0.401 5.599 15 C -0.238 4.238 16 C -0.137 4.137 17 N -0.215 5.215 18 C -0.180 4.180 19 C 0.054 3.946 20 N -0.339 5.339 21 C -0.359 4.359 22 H 0.101 0.899 23 C -0.259 4.259 24 N -0.600 5.600 25 Si 0.805 3.195 26 H -0.216 1.216 27 H -0.223 1.223 28 H -0.190 1.190 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.250 0.750 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.209 0.791 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.008 0.992 46 H 0.065 0.935 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -27.578 13.407 -3.289 30.840 hybrid contribution 2.084 -1.130 0.484 2.419 sum -25.494 12.277 -2.805 28.435 Atomic orbital electron populations 1.21647 0.93762 1.01943 1.01782 1.21901 0.96532 0.97629 1.00513 1.21260 0.84327 0.94563 0.94717 0.92950 1.21601 0.84354 0.91941 0.96966 0.90807 1.45896 1.26989 1.51820 1.10836 1.21165 0.84463 0.80158 0.83936 1.90690 1.72909 1.57508 1.25241 1.21485 0.93903 1.00563 0.99724 1.19811 0.91275 0.98492 0.96807 1.20267 0.96533 0.95124 0.95425 1.27120 1.03063 1.00617 1.09892 1.83818 1.15212 1.23998 1.36887 1.27645 0.99907 0.94263 1.02015 1.20591 0.90734 1.04759 0.97662 1.66058 1.02198 1.32376 1.20915 1.23221 0.95753 0.98683 1.00376 1.21188 0.94149 0.92393 0.86896 1.44711 1.00588 1.68362 1.20196 1.19326 0.89585 1.34198 0.92756 0.89864 1.25698 0.98391 1.02316 0.99542 1.70147 1.09712 1.54294 1.25827 0.85112 0.77712 0.77668 0.79050 1.21599 1.22329 1.19040 0.92279 0.91418 0.93286 0.94697 0.93189 0.75008 0.87242 0.87139 0.90922 0.89470 0.79081 0.88152 0.88969 0.88749 0.91693 0.90932 0.99185 0.93535 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.57 71.98 0.69 -2.98 16 2 C -0.13 -4.64 5.41 30.59 0.17 -4.47 16 3 C 0.16 6.17 2.94 45.34 0.13 6.31 16 4 H 0.05 1.90 7.68 -2.39 -0.02 1.88 16 5 C 0.16 5.60 1.92 46.18 0.09 5.69 16 6 H 0.07 2.94 7.34 -2.38 -0.02 2.92 16 7 N -0.70 -18.85 4.93 -436.91 -2.16 -21.01 16 8 C 0.51 13.96 7.83 87.66 0.69 14.65 16 9 O -0.58 -20.77 15.71 -3.04 -0.05 -20.82 16 10 C -0.12 -2.27 5.60 29.85 0.17 -2.10 16 11 C -0.02 -0.48 5.00 29.85 0.15 -0.33 16 12 C 0.06 1.11 6.08 41.52 0.25 1.37 16 13 C -0.27 -4.17 11.07 66.78 0.74 -3.44 16 14 S 0.15 1.79 23.17 -56.49 -1.31 0.48 16 15 C 0.04 0.58 7.39 88.52 0.65 1.24 16 16 C -0.08 -0.60 10.47 71.24 0.75 0.15 16 17 N -0.50 -9.90 10.34 -179.41 -1.85 -11.76 16 18 C -0.14 -5.60 6.77 31.99 0.22 -5.39 16 19 C 0.18 9.11 5.46 86.86 0.47 9.58 16 20 N -0.61 -30.92 3.13 -668.26 -2.09 -33.01 16 21 C -0.23 -12.56 9.77 84.03 0.82 -11.74 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 23 C -0.07 -3.77 5.47 84.86 0.46 -3.30 16 24 N -0.95 -57.55 10.47 21.65 0.23 -57.32 16 25 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.36 7.38 -2.39 -0.02 1.34 16 32 H 0.03 1.42 8.08 -2.38 -0.02 1.40 16 33 H 0.05 1.96 7.91 -2.39 -0.02 1.94 16 34 H 0.41 8.70 8.31 -92.71 -0.77 7.93 16 35 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.11 1.98 8.07 -2.39 -0.02 1.97 16 37 H 0.07 1.71 8.10 -2.38 -0.02 1.69 16 38 H 0.09 1.77 7.99 -2.38 -0.02 1.75 16 39 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.10 0.31 8.12 -2.39 -0.02 0.29 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 45 H -0.01 -0.56 8.11 -2.39 -0.02 -0.58 16 46 H 0.05 2.64 6.73 -2.39 -0.02 2.62 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -72.21 394.38 1.44 -70.77 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.19 Total: 19.80 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 6.45 Total: 5.23 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.87 Total: -123.10 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.31 Total: 0.48 kcal Total: -72.21 1.44 -70.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692016183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.171 kcal (2) G-P(sol) polarization free energy of solvation -72.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds