Wall clock time and date at job start Tue Mar 31 2020 21:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.49846 * 2 1 4 4 C 1.53035 * 109.52374 * 239.92107 * 2 1 3 5 5 C 1.53043 * 109.53619 * 301.39330 * 4 2 1 6 6 C 1.53187 * 109.31603 * 298.64009 * 5 4 2 7 7 N 1.46920 * 108.77632 * 54.63198 * 6 5 4 8 8 C 1.34774 * 120.63113 * 126.37245 * 7 6 5 9 9 O 1.21628 * 120.00189 * 188.88215 * 8 7 6 10 10 C 1.47266 * 120.00104 * 8.88546 * 8 7 6 11 11 C 1.35212 * 123.14421 * 187.66022 * 10 8 7 12 12 S 1.70941 * 108.82856 * 179.97438 * 11 10 8 13 13 C 1.70775 * 91.12759 * 0.02562 * 12 11 10 14 14 N 1.28644 * 110.56035 * 359.76503 * 13 12 11 15 15 C 1.46923 * 118.74016 * 306.39279 * 7 6 5 16 16 H 1.08999 * 109.70623 * 293.75247 * 15 7 6 17 17 C 1.53003 * 109.58916 * 173.39876 * 15 7 6 18 18 C 1.52996 * 109.46975 * 178.27895 * 17 15 7 19 19 C 1.53005 * 109.46849 * 176.12303 * 18 17 15 20 20 N 1.46499 * 109.47270 * 179.97438 * 19 18 17 21 21 C 1.36940 * 120.00394 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99249 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00423 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99567 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00250 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47420 * 270.00652 * 25 23 21 27 27 H 1.48496 * 109.47087 * 150.00118 * 25 23 21 28 28 H 1.48503 * 109.46534 * 30.00555 * 25 23 21 29 29 H 1.09003 * 109.46998 * 299.93524 * 1 2 3 30 30 H 1.08997 * 109.47463 * 59.93451 * 1 2 3 31 31 H 1.08994 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46737 * 61.41519 * 4 2 1 33 33 H 1.09000 * 109.45832 * 181.39485 * 4 2 1 34 34 H 1.09000 * 109.49528 * 58.59387 * 5 4 2 35 35 H 1.09001 * 109.50045 * 178.68189 * 5 4 2 36 36 H 1.09001 * 109.58579 * 174.42196 * 6 5 4 37 37 H 1.09007 * 109.58501 * 294.84585 * 6 5 4 38 38 H 1.08001 * 125.58453 * 359.96183 * 11 10 8 39 39 H 1.08005 * 124.71733 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.47372 * 58.27144 * 17 15 7 41 41 H 1.09007 * 109.46555 * 298.27736 * 17 15 7 42 42 H 1.09001 * 109.47728 * 56.12179 * 18 17 15 43 43 H 1.09002 * 109.47428 * 296.11445 * 18 17 15 44 44 H 1.09000 * 109.47507 * 59.99198 * 19 18 17 45 45 H 1.09006 * 109.46995 * 299.99341 * 19 18 17 46 46 H 0.97002 * 119.99961 * 359.97438 * 20 19 18 47 47 H 0.96993 * 120.00125 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0415 -0.7229 -1.2481 5 6 1.5044 -2.1559 -1.2657 6 6 2.0153 -2.9037 -0.0303 7 7 1.6522 -2.1380 1.1698 8 6 0.9747 -2.7218 2.1780 9 8 0.5392 -2.0453 3.0902 10 6 0.7616 -4.1790 2.1753 11 6 -0.0320 -4.8117 3.0686 12 16 -0.0158 -6.4874 2.7312 13 6 1.0495 -6.2470 1.4183 14 7 1.3308 -4.9985 1.2875 15 6 2.0413 -0.7234 1.2498 16 1 3.1272 -0.6432 1.2999 17 6 1.4223 -0.0909 2.4979 18 6 1.8639 1.3702 2.6016 19 6 1.1690 2.0296 3.7947 20 7 1.5923 3.4285 3.8944 21 6 1.0972 4.2242 4.8929 22 1 0.3951 3.8202 5.6072 23 6 1.4987 5.5496 4.9878 24 7 2.3549 6.0417 4.1175 25 14 0.8240 6.6347 6.3503 26 1 -0.4167 7.3032 5.8823 27 1 1.8339 7.6619 6.7110 28 1 0.5184 5.8015 7.5410 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5148 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6994 -0.1960 -2.1389 33 1 3.1312 -0.7440 -1.2346 34 1 0.4146 -2.1361 -1.2542 35 1 1.8498 -2.6629 -2.1667 36 1 1.5571 -3.8918 0.0141 37 1 3.0994 -3.0035 -0.0860 38 1 -0.5854 -4.3363 3.8650 39 1 1.4304 -7.0332 0.7833 40 1 1.7533 -0.6343 3.3829 41 1 0.3355 -0.1380 2.4281 42 1 1.5935 1.8975 1.6867 43 1 2.9441 1.4143 2.7407 44 1 1.4393 1.5024 4.7096 45 1 0.0887 1.9855 3.6557 46 1 2.2232 3.7912 3.2531 47 1 2.7055 5.4781 3.4103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692108101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:51 Heat of formation + Delta-G solvation = 41.191851 kcal Electronic energy + Delta-G solvation = -27659.806693 eV Core-core repulsion = 23970.580564 eV Total energy + Delta-G solvation = -3689.226129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33586 -39.71345 -37.74339 -35.67967 -33.97712 -33.31308 -31.42782 -31.04154 -29.34318 -27.56010 -26.34608 -25.69584 -24.36192 -23.18245 -22.57839 -21.57762 -20.54615 -19.94190 -19.33059 -18.06761 -17.10784 -16.70338 -16.35741 -15.98701 -15.55022 -15.44876 -14.66917 -14.57932 -14.24564 -13.99100 -13.85998 -13.76365 -13.62940 -13.52083 -13.23454 -13.19181 -12.63860 -12.39020 -12.11071 -11.81582 -11.75391 -11.43694 -11.24722 -10.97729 -10.79097 -10.70273 -10.60537 -10.39080 -10.30454 -10.20555 -10.06713 -9.91823 -9.67241 -9.42022 -9.16623 -9.02053 -8.74746 -8.53437 -6.85891 -5.99732 -2.97232 0.12060 0.80753 1.16239 1.60533 2.88084 3.12144 3.58203 3.64023 3.67227 3.77875 4.41657 4.60939 4.72251 4.75871 4.77610 4.78737 4.90263 4.94081 5.11754 5.18983 5.34998 5.40453 5.47595 5.59498 5.65931 5.66584 5.69457 5.74105 5.80925 5.86620 5.96183 6.02467 6.08156 6.10137 6.22125 6.32216 6.35842 6.44523 6.51296 6.55891 6.85185 6.92217 7.04623 7.05795 7.34764 7.93897 8.06899 8.87549 9.37218 10.23501 10.39853 11.49658 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.002551 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.482692 B =10973.072106 C =12361.782831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.081 3.919 7 N -0.587 5.587 8 C 0.587 3.413 9 O -0.516 6.516 10 C 0.007 3.993 11 C -0.221 4.221 12 S 0.212 5.788 13 C -0.010 4.010 14 N -0.436 5.436 15 C 0.152 3.848 16 H 0.072 0.928 17 C -0.105 4.105 18 C -0.133 4.133 19 C 0.163 3.837 20 N -0.747 5.747 21 C -0.325 4.325 22 H 0.064 0.936 23 C -0.050 4.050 24 N -0.949 5.949 25 Si 1.083 2.917 26 H -0.296 1.296 27 H -0.288 1.288 28 H -0.295 1.295 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.061 0.939 38 H 0.191 0.809 39 H 0.205 0.795 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.018 0.982 45 H 0.017 0.983 46 H 0.365 0.635 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -31.604 -12.171 33.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.042 4.042 7 N -0.318 5.318 8 C 0.372 3.628 9 O -0.392 6.392 10 C -0.127 4.127 11 C -0.363 4.363 12 S 0.467 5.533 13 C -0.308 4.308 14 N -0.151 5.151 15 C 0.050 3.950 16 H 0.090 0.910 17 C -0.143 4.143 18 C -0.172 4.172 19 C 0.036 3.964 20 N -0.392 5.392 21 C -0.457 4.457 22 H 0.082 0.918 23 C -0.247 4.247 24 N -0.595 5.595 25 Si 0.915 3.085 26 H -0.224 1.224 27 H -0.214 1.214 28 H -0.222 1.222 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.208 0.792 39 H 0.222 0.778 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.198 0.802 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.412 -30.516 -10.864 32.572 hybrid contribution 0.447 -0.551 -1.054 1.270 sum -2.964 -31.068 -11.918 33.407 Atomic orbital electron populations 1.21875 0.94789 1.01593 1.02043 1.21557 0.96871 0.99901 0.94035 0.89509 1.21581 1.00416 0.95576 0.97827 1.21987 1.01457 0.96191 0.97846 1.22690 1.00786 0.97959 0.82793 1.47871 1.54889 1.11246 1.17836 1.17175 0.78764 0.84364 0.82547 1.90944 1.49335 1.61877 1.37048 1.20756 1.00556 0.96284 0.95100 1.26671 1.05100 0.98814 1.05700 1.83000 1.41246 1.03457 1.25608 1.28676 1.02167 0.97367 1.02569 1.66961 1.22849 1.01967 1.23326 1.21443 0.98554 0.78660 0.96365 0.91001 1.22115 1.02013 0.94151 0.95977 1.21927 1.00287 0.95441 0.99522 1.20506 0.95957 0.85426 0.94555 1.42425 1.54334 1.07054 1.35396 1.20106 1.23656 0.94742 1.07168 0.91834 1.25774 0.99679 0.95324 1.03942 1.70836 1.32913 1.38203 1.17560 0.83183 0.75449 0.75448 0.74450 1.22388 1.21428 1.22202 0.91667 0.93025 0.92898 0.91805 0.91924 0.91495 0.91156 0.84690 0.92037 0.79169 0.77811 0.90095 0.90037 0.92219 0.92648 0.96456 0.96475 0.80195 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.20 37.16 0.30 -1.52 16 2 C -0.10 -1.25 2.35 -90.50 -0.21 -1.47 16 3 H 0.09 1.11 6.72 -51.93 -0.35 0.76 16 4 C -0.12 -1.13 5.43 -26.69 -0.14 -1.27 16 5 C -0.14 -1.21 5.74 -26.61 -0.15 -1.36 16 6 C 0.08 0.79 5.96 -3.72 -0.02 0.77 16 7 N -0.59 -7.24 2.41 -166.54 -0.40 -7.64 16 8 C 0.59 8.00 7.55 -12.59 -0.10 7.91 16 9 O -0.52 -8.51 12.17 5.25 0.06 -8.44 16 10 C 0.01 0.08 6.47 -84.52 -0.55 -0.47 16 11 C -0.22 -1.93 10.62 29.65 0.32 -1.61 16 12 S 0.21 1.05 22.97 -107.50 -2.47 -1.42 16 13 C -0.01 -0.05 12.17 51.43 0.63 0.57 16 14 N -0.44 -3.82 6.81 -12.36 -0.08 -3.90 16 15 C 0.15 2.02 2.69 -67.60 -0.18 1.84 16 16 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 17 C -0.10 -1.70 2.70 -26.73 -0.07 -1.77 16 18 C -0.13 -2.44 5.13 -26.73 -0.14 -2.58 16 19 C 0.16 3.77 6.26 -4.04 -0.03 3.74 16 20 N -0.75 -20.73 5.60 -59.90 -0.34 -21.06 16 21 C -0.33 -9.95 9.99 -15.06 -0.15 -10.10 16 22 H 0.06 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.05 -1.56 5.50 -17.43 -0.10 -1.65 16 24 N -0.95 -30.86 13.70 55.49 0.76 -30.10 16 25 Si 1.08 27.41 29.92 -169.99 -5.09 22.33 16 26 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 29 H 0.06 0.94 6.30 -51.93 -0.33 0.62 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.66 5.97 -51.93 -0.31 0.35 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.64 6.34 -51.93 -0.33 0.31 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.14 1.27 4.14 -69.91 -0.29 0.98 16 37 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.19 1.61 8.04 -52.49 -0.42 1.19 16 39 H 0.21 0.34 8.06 -52.48 -0.42 -0.08 16 40 H 0.08 1.45 6.43 -51.93 -0.33 1.12 16 41 H 0.08 1.42 5.12 -51.93 -0.27 1.16 16 42 H 0.06 1.07 6.44 -51.93 -0.33 0.73 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.37 10.20 6.50 -40.82 -0.27 9.93 16 47 H 0.25 8.15 6.77 -40.82 -0.28 7.88 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -36.24 369.60 -9.51 -45.75 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.94 Total: 7.89 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.59 Total: -8.96 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.06 Total: -62.71 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.06 Total: -8.44 kcal Atomic # 14 Polarization: 27.41 SS G_CDS: -5.09 Total: 22.33 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.47 Total: -1.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.24 -9.51 -45.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692108101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.939 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds