Wall clock time and date at job start Tue Mar 31 2020 21:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.49846 * 2 1 4 4 C 1.53035 * 109.52374 * 239.92107 * 2 1 3 5 5 C 1.53043 * 109.53619 * 301.39330 * 4 2 1 6 6 C 1.53187 * 109.31603 * 298.64009 * 5 4 2 7 7 N 1.46920 * 108.77632 * 54.63198 * 6 5 4 8 8 C 1.34774 * 120.63113 * 126.37245 * 7 6 5 9 9 O 1.21628 * 120.00189 * 188.88215 * 8 7 6 10 10 C 1.47266 * 120.00104 * 8.88546 * 8 7 6 11 11 C 1.35212 * 123.14421 * 187.66022 * 10 8 7 12 12 S 1.70941 * 108.82856 * 179.97438 * 11 10 8 13 13 C 1.70775 * 91.12759 * 0.02562 * 12 11 10 14 14 N 1.28644 * 110.56035 * 359.76503 * 13 12 11 15 15 C 1.46923 * 118.74016 * 306.39279 * 7 6 5 16 16 H 1.08999 * 109.70623 * 293.75247 * 15 7 6 17 17 C 1.53003 * 109.58916 * 173.39876 * 15 7 6 18 18 C 1.52996 * 109.46975 * 178.27895 * 17 15 7 19 19 C 1.53005 * 109.46849 * 176.12303 * 18 17 15 20 20 N 1.46499 * 109.47270 * 179.97438 * 19 18 17 21 21 C 1.36940 * 120.00394 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99249 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00423 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99567 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00250 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47420 * 270.00652 * 25 23 21 27 27 H 1.48496 * 109.47087 * 150.00118 * 25 23 21 28 28 H 1.48503 * 109.46534 * 30.00555 * 25 23 21 29 29 H 1.09003 * 109.46998 * 299.93524 * 1 2 3 30 30 H 1.08997 * 109.47463 * 59.93451 * 1 2 3 31 31 H 1.08994 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46737 * 61.41519 * 4 2 1 33 33 H 1.09000 * 109.45832 * 181.39485 * 4 2 1 34 34 H 1.09000 * 109.49528 * 58.59387 * 5 4 2 35 35 H 1.09001 * 109.50045 * 178.68189 * 5 4 2 36 36 H 1.09001 * 109.58579 * 174.42196 * 6 5 4 37 37 H 1.09007 * 109.58501 * 294.84585 * 6 5 4 38 38 H 1.08001 * 125.58453 * 359.96183 * 11 10 8 39 39 H 1.08005 * 124.71733 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.47372 * 58.27144 * 17 15 7 41 41 H 1.09007 * 109.46555 * 298.27736 * 17 15 7 42 42 H 1.09001 * 109.47728 * 56.12179 * 18 17 15 43 43 H 1.09002 * 109.47428 * 296.11445 * 18 17 15 44 44 H 1.09000 * 109.47507 * 59.99198 * 19 18 17 45 45 H 1.09006 * 109.46995 * 299.99341 * 19 18 17 46 46 H 0.97002 * 119.99961 * 359.97438 * 20 19 18 47 47 H 0.96993 * 120.00125 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0415 -0.7229 -1.2481 5 6 1.5044 -2.1559 -1.2657 6 6 2.0153 -2.9037 -0.0303 7 7 1.6522 -2.1380 1.1698 8 6 0.9747 -2.7218 2.1780 9 8 0.5392 -2.0453 3.0902 10 6 0.7616 -4.1790 2.1753 11 6 -0.0320 -4.8117 3.0686 12 16 -0.0158 -6.4874 2.7312 13 6 1.0495 -6.2470 1.4183 14 7 1.3308 -4.9985 1.2875 15 6 2.0413 -0.7234 1.2498 16 1 3.1272 -0.6432 1.2999 17 6 1.4223 -0.0909 2.4979 18 6 1.8639 1.3702 2.6016 19 6 1.1690 2.0296 3.7947 20 7 1.5923 3.4285 3.8944 21 6 1.0972 4.2242 4.8929 22 1 0.3951 3.8202 5.6072 23 6 1.4987 5.5496 4.9878 24 7 2.3549 6.0417 4.1175 25 14 0.8240 6.6347 6.3503 26 1 -0.4167 7.3032 5.8823 27 1 1.8339 7.6619 6.7110 28 1 0.5184 5.8015 7.5410 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5148 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6994 -0.1960 -2.1389 33 1 3.1312 -0.7440 -1.2346 34 1 0.4146 -2.1361 -1.2542 35 1 1.8498 -2.6629 -2.1667 36 1 1.5571 -3.8918 0.0141 37 1 3.0994 -3.0035 -0.0860 38 1 -0.5854 -4.3363 3.8650 39 1 1.4304 -7.0332 0.7833 40 1 1.7533 -0.6343 3.3829 41 1 0.3355 -0.1380 2.4281 42 1 1.5935 1.8975 1.6867 43 1 2.9441 1.4143 2.7407 44 1 1.4393 1.5024 4.7096 45 1 0.0887 1.9855 3.6557 46 1 2.2232 3.7912 3.2531 47 1 2.7055 5.4781 3.4103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692108101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:50 Heat of formation + Delta-G solvation = 18.014950 kcal Electronic energy + Delta-G solvation = -27660.811719 eV Core-core repulsion = 23970.580564 eV Total energy + Delta-G solvation = -3690.231155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.21913 -40.46457 -38.73241 -37.53621 -35.50769 -34.43147 -33.13001 -31.68506 -30.91772 -28.71840 -27.22715 -26.86020 -25.66585 -24.81492 -23.69636 -22.84363 -21.93714 -20.74084 -20.05394 -19.41657 -18.88781 -17.51535 -17.25278 -16.97708 -16.79966 -16.50559 -16.16138 -15.84366 -15.60303 -15.32464 -15.20922 -14.95754 -14.74567 -14.50770 -14.33896 -14.14315 -13.78054 -13.36699 -13.29283 -12.98852 -12.90836 -12.67132 -12.65774 -12.55028 -12.25533 -12.07052 -11.96483 -11.88109 -11.71795 -11.49415 -11.32462 -11.19770 -10.97620 -10.74773 -10.48179 -10.12514 -9.98691 -9.50769 -9.18238 -8.47323 -5.40473 -0.46350 0.32058 0.64614 0.91478 1.54552 1.66564 1.81573 1.97111 2.24841 2.67487 3.06646 3.33617 3.47615 3.71375 3.79107 3.87255 3.92501 4.06483 4.11254 4.13251 4.17357 4.25175 4.36400 4.44590 4.50948 4.57359 4.60150 4.61978 4.73839 4.77045 4.80108 4.90652 4.93931 5.00305 5.06116 5.14641 5.18271 5.20050 5.31157 5.35242 5.42680 5.50591 5.52398 5.75599 6.28947 6.43749 6.47739 7.03509 7.09414 7.93380 8.05897 9.05235 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.002551 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.482692 B =10973.072106 C =12361.782831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.078 3.922 7 N -0.586 5.586 8 C 0.576 3.424 9 O -0.561 6.561 10 C -0.017 4.017 11 C -0.245 4.245 12 S 0.294 5.706 13 C -0.004 4.004 14 N -0.457 5.457 15 C 0.154 3.846 16 H 0.076 0.924 17 C -0.086 4.086 18 C -0.117 4.117 19 C 0.164 3.836 20 N -0.758 5.758 21 C -0.342 4.342 22 H 0.061 0.939 23 C -0.104 4.104 24 N -0.972 5.972 25 Si 1.134 2.866 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.275 1.275 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.067 0.933 38 H 0.182 0.818 39 H 0.246 0.754 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.006 0.994 45 H 0.009 0.991 46 H 0.362 0.638 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 -34.166 -13.471 36.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.044 4.044 7 N -0.316 5.316 8 C 0.362 3.638 9 O -0.441 6.441 10 C -0.152 4.152 11 C -0.388 4.388 12 S 0.550 5.450 13 C -0.302 4.302 14 N -0.173 5.173 15 C 0.051 3.949 16 H 0.094 0.906 17 C -0.124 4.124 18 C -0.155 4.155 19 C 0.038 3.962 20 N -0.403 5.403 21 C -0.473 4.473 22 H 0.079 0.921 23 C -0.295 4.295 24 N -0.620 5.620 25 Si 0.958 3.042 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.201 1.201 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.162 0.838 37 H 0.086 0.914 38 H 0.199 0.801 39 H 0.262 0.738 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.027 0.973 46 H 0.194 0.806 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.461 -33.151 -12.204 35.495 hybrid contribution 0.422 0.052 -0.633 0.762 sum -3.039 -33.099 -12.837 35.631 Atomic orbital electron populations 1.21806 0.95326 1.01310 1.01247 1.21537 0.96327 0.99640 0.94708 0.90362 1.21565 1.00876 0.95933 0.96580 1.21968 1.00922 0.95622 0.98355 1.22911 1.01272 0.98268 0.81906 1.47969 1.54377 1.10733 1.18545 1.17698 0.78154 0.85854 0.82045 1.90905 1.51319 1.63308 1.38561 1.20419 1.02640 0.95056 0.97070 1.26854 1.04802 1.01839 1.05311 1.82735 1.39262 0.99189 1.23824 1.29367 1.01032 0.97059 1.02702 1.66869 1.23804 1.03065 1.23558 1.21303 0.98437 0.79756 0.95396 0.90624 1.21847 1.01107 0.92413 0.97022 1.21771 0.99699 0.96553 0.97487 1.20596 0.95856 0.83635 0.96159 1.42612 1.54278 1.08485 1.34878 1.20445 1.23626 0.95530 1.07711 0.92098 1.27388 0.99386 0.97075 1.05623 1.70954 1.34338 1.38364 1.18309 0.82562 0.75281 0.74040 0.72355 1.20730 1.21282 1.20062 0.94390 0.91768 0.92930 0.90677 0.91115 0.92258 0.88531 0.83801 0.91423 0.80102 0.73817 0.92154 0.91555 0.91593 0.92474 0.97565 0.97273 0.80591 0.94545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.20 71.98 0.59 -2.97 16 2 C -0.10 -2.45 2.35 -10.72 -0.03 -2.48 16 3 H 0.08 1.99 6.72 -2.38 -0.02 1.98 16 4 C -0.11 -1.96 5.43 30.62 0.17 -1.80 16 5 C -0.13 -2.02 5.74 30.67 0.18 -1.84 16 6 C 0.08 1.42 5.96 86.36 0.52 1.93 16 7 N -0.59 -14.61 2.41 -799.06 -1.93 -16.54 16 8 C 0.58 16.44 7.55 86.62 0.65 17.10 16 9 O -0.56 -20.03 12.17 -4.12 -0.05 -20.08 16 10 C -0.02 -0.38 6.47 40.56 0.26 -0.11 16 11 C -0.25 -4.24 10.62 67.12 0.71 -3.52 16 12 S 0.29 2.11 22.97 -56.49 -1.30 0.81 16 13 C 0.00 -0.03 12.17 130.71 1.59 1.56 16 14 N -0.46 -7.21 6.81 -193.02 -1.32 -8.53 16 15 C 0.15 4.19 2.69 44.98 0.12 4.32 16 16 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 17 C -0.09 -2.96 2.70 30.59 0.08 -2.88 16 18 C -0.12 -4.47 5.13 30.59 0.16 -4.32 16 19 C 0.16 7.95 6.26 86.38 0.54 8.49 16 20 N -0.76 -43.41 5.60 -343.44 -1.92 -45.34 16 21 C -0.34 -21.30 9.99 84.03 0.84 -20.46 16 22 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 23 C -0.10 -6.45 5.50 84.86 0.47 -5.98 16 24 N -0.97 -64.03 13.70 21.65 0.30 -63.73 16 25 Si 1.13 55.08 29.92 68.60 2.05 57.13 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 29 H 0.04 1.16 6.30 -2.39 -0.02 1.14 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.33 5.97 -2.39 -0.01 1.31 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.03 6.34 -2.39 -0.02 1.01 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.15 2.46 4.14 -37.88 -0.16 2.30 16 37 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.18 3.32 8.04 -2.91 -0.02 3.29 16 39 H 0.25 -0.39 8.06 -2.91 -0.02 -0.42 16 40 H 0.06 2.34 6.43 -2.39 -0.02 2.32 16 41 H 0.07 2.50 5.12 -2.38 -0.01 2.49 16 42 H 0.07 2.44 6.44 -2.39 -0.02 2.43 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.36 20.91 6.50 -92.71 -0.60 20.30 16 47 H 0.24 16.05 6.77 -92.71 -0.63 15.42 16 Total: -1.00 -81.19 369.60 3.07 -78.12 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.39 Total: 31.12 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 6.85 Total: -12.96 kcal Atomic # 7 Polarization: -129.27 SS G_CDS: -4.87 Total: -134.14 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 14 Polarization: 55.08 SS G_CDS: 2.05 Total: 57.13 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.30 Total: 0.81 kcal Total: -81.19 3.07 -78.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692108101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.131 kcal (2) G-P(sol) polarization free energy of solvation -81.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds