Wall clock time and date at job start Tue Mar 31 2020 21:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50068 * 2 1 4 4 C 1.53036 * 109.50146 * 239.92786 * 2 1 3 5 5 C 1.53042 * 109.53920 * 301.41877 * 4 2 1 6 6 C 1.53196 * 109.30868 * 298.63097 * 5 4 2 7 7 N 1.46923 * 108.77735 * 54.63753 * 6 5 4 8 8 C 1.34777 * 120.63249 * 126.11234 * 7 6 5 9 9 O 1.21686 * 119.99993 * 173.62602 * 8 7 6 10 10 C 1.46682 * 120.00252 * 353.63095 * 8 7 6 11 11 C 1.35660 * 126.13373 * 141.46521 * 10 8 7 12 12 N 1.30944 * 114.19242 * 179.78846 * 11 10 8 13 13 C 1.29437 * 117.36309 * 0.52196 * 12 11 10 14 14 S 1.70956 * 110.38769 * 359.71052 * 13 12 11 15 15 C 1.46931 * 118.73599 * 306.38853 * 7 6 5 16 16 H 1.08994 * 109.58455 * 293.81793 * 15 7 6 17 17 C 1.53005 * 109.58334 * 173.39675 * 15 7 6 18 18 C 1.53000 * 109.46864 * 181.37258 * 17 15 7 19 19 C 1.52994 * 109.47042 * 185.21944 * 18 17 15 20 20 N 1.46509 * 109.47125 * 179.97438 * 19 18 17 21 21 C 1.36936 * 119.99887 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00163 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99561 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00371 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99933 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47033 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47171 * 119.99505 * 25 23 21 28 28 H 1.48502 * 109.47222 * 239.99708 * 25 23 21 29 29 H 1.08997 * 109.46781 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46931 * 300.07412 * 1 2 3 31 31 H 1.08998 * 109.46665 * 60.06884 * 1 2 3 32 32 H 1.08997 * 109.46361 * 181.39657 * 4 2 1 33 33 H 1.09000 * 109.45035 * 61.42994 * 4 2 1 34 34 H 1.09003 * 109.49929 * 178.67987 * 5 4 2 35 35 H 1.08997 * 109.52451 * 58.59436 * 5 4 2 36 36 H 1.08996 * 109.59129 * 294.84366 * 6 5 4 37 37 H 1.09006 * 109.70274 * 174.49149 * 6 5 4 38 38 H 1.07998 * 122.90099 * 359.95863 * 11 10 8 39 39 H 1.07990 * 124.80666 * 179.73369 * 13 12 11 40 40 H 1.08996 * 109.47261 * 301.36620 * 17 15 7 41 41 H 1.08988 * 109.47309 * 61.37080 * 17 15 7 42 42 H 1.09010 * 109.46824 * 305.21712 * 18 17 15 43 43 H 1.09002 * 109.47279 * 65.21633 * 18 17 15 44 44 H 1.08998 * 109.46899 * 299.99240 * 19 18 17 45 45 H 1.08995 * 109.47359 * 60.00111 * 19 18 17 46 46 H 0.97001 * 119.99589 * 359.97438 * 20 19 18 47 47 H 0.97003 * 120.00173 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7229 -1.2484 5 6 1.5030 -2.1555 -1.2664 6 6 2.0140 -2.9040 -0.0312 7 7 1.6515 -2.1384 1.1692 8 6 0.9695 -2.7209 2.1752 9 8 0.7760 -2.1128 3.2113 10 6 0.4605 -4.0880 2.0212 11 6 0.4378 -5.0460 2.9814 12 7 -0.0738 -6.1861 2.5900 13 6 -0.4774 -6.2669 1.3628 14 16 -0.2242 -4.7825 0.5536 15 6 2.0413 -0.7241 1.2495 16 1 3.1274 -0.6466 1.2981 17 6 1.4228 -0.0917 2.4980 18 6 1.8022 1.3892 2.5608 19 6 1.2944 1.9905 3.8727 20 7 1.6582 3.4084 3.9332 21 6 1.3070 4.1595 5.0230 22 1 0.7615 3.7068 5.8378 23 6 1.6513 5.5030 5.0800 24 7 2.3155 6.0549 4.0868 25 14 1.1717 6.5278 6.5663 26 1 0.4356 5.6783 7.5367 27 1 2.3955 7.0689 7.2102 28 1 0.3021 7.6511 6.1333 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8894 31 1 -0.3632 0.5128 -0.8906 32 1 3.1306 -0.7442 -1.2353 33 1 1.6987 -0.1954 -2.1388 34 1 1.8481 -2.6624 -2.1676 35 1 0.4133 -2.1357 -1.2547 36 1 3.0979 -3.0044 -0.0872 37 1 1.5575 -3.8928 0.0143 38 1 0.8072 -4.8817 3.9829 39 1 -0.9129 -7.1472 0.9139 40 1 0.3379 -0.1872 2.4542 41 1 1.7968 -0.6005 3.3862 42 1 2.8866 1.4889 2.5111 43 1 1.3500 1.9161 1.7205 44 1 0.2101 1.8909 3.9224 45 1 1.7466 1.4637 4.7129 46 1 2.1484 3.8149 3.2015 47 1 2.5564 6.9937 4.1268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692108283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:48 Heat of formation + Delta-G solvation = 12.396121 kcal Electronic energy + Delta-G solvation = -27576.684332 eV Core-core repulsion = 23886.209526 eV Total energy + Delta-G solvation = -3690.474805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00086 -40.59419 -38.77917 -37.33290 -35.50052 -34.40859 -33.19554 -31.66381 -31.05493 -28.54595 -27.38267 -26.96138 -25.67774 -24.75270 -23.52489 -22.45641 -22.02181 -20.75494 -20.05016 -19.17666 -18.92266 -17.78310 -17.48632 -16.84668 -16.55180 -16.39855 -15.80652 -15.69548 -15.52657 -15.24605 -15.19492 -14.99736 -14.98385 -14.71675 -14.55002 -14.06983 -13.73308 -13.44111 -13.21107 -12.95562 -12.84812 -12.80341 -12.64454 -12.47381 -12.25833 -12.11406 -12.02985 -11.96153 -11.74655 -11.60601 -11.37908 -11.22022 -10.96978 -10.82249 -10.49312 -10.16211 -9.94855 -9.62425 -9.04436 -7.98668 -5.28206 -0.72648 0.10738 0.54916 1.44327 1.45248 1.45967 1.56607 1.79824 2.01124 2.53446 3.23712 3.34127 3.44685 3.72810 3.76876 3.86385 3.97483 4.03458 4.14985 4.16449 4.21884 4.23461 4.33489 4.45078 4.54690 4.60021 4.66653 4.68948 4.76706 4.83909 4.88472 4.95072 4.98549 5.03960 5.06900 5.13516 5.23787 5.25588 5.30433 5.43047 5.43756 5.47285 5.50872 5.71397 6.24115 6.26959 6.57175 7.01291 7.29890 8.04380 8.30987 9.25210 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.002579 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.159630 B =10856.112564 C =12023.672697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.081 0.919 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.090 3.910 7 N -0.595 5.595 8 C 0.587 3.413 9 O -0.551 6.551 10 C -0.315 4.315 11 C 0.100 3.900 12 N -0.505 5.505 13 C 0.026 3.974 14 S 0.242 5.758 15 C 0.159 3.841 16 H 0.081 0.919 17 C -0.094 4.094 18 C -0.113 4.113 19 C 0.156 3.844 20 N -0.746 5.746 21 C -0.251 4.251 22 H 0.069 0.931 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.977 3.023 26 H -0.270 1.270 27 H -0.288 1.288 28 H -0.288 1.288 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.176 0.824 39 H 0.242 0.758 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.008 0.992 45 H 0.008 0.992 46 H 0.375 0.625 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 -29.128 -19.042 34.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.149 4.149 5 C -0.170 4.170 6 C -0.032 4.032 7 N -0.327 5.327 8 C 0.373 3.627 9 O -0.431 6.431 10 C -0.439 4.439 11 C -0.057 4.057 12 N -0.218 5.218 13 C -0.268 4.268 14 S 0.497 5.503 15 C 0.056 3.944 16 H 0.099 0.901 17 C -0.132 4.132 18 C -0.151 4.151 19 C 0.030 3.970 20 N -0.388 5.388 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.805 3.195 26 H -0.194 1.194 27 H -0.215 1.215 28 H -0.215 1.215 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.193 0.807 39 H 0.258 0.742 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.207 0.793 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.243 -28.982 -19.058 34.838 hybrid contribution 0.251 1.195 1.905 2.263 sum -2.992 -27.787 -17.153 32.792 Atomic orbital electron populations 1.21853 0.95280 1.01520 1.01468 1.21566 0.96381 0.99887 0.94511 0.90117 1.21558 1.01129 0.95574 0.96668 1.22001 1.01680 0.95745 0.97606 1.22401 1.02043 0.95247 0.83523 1.48051 1.54735 1.11307 1.18580 1.17201 0.77920 0.84048 0.83485 1.90934 1.59413 1.63245 1.29520 1.25800 1.16651 1.00578 1.00891 1.22205 0.96415 0.86482 1.00592 1.66321 1.14429 1.24959 1.16112 1.29654 1.00189 1.04480 0.92438 1.83784 1.51537 1.05255 1.09728 1.21330 0.98913 0.78689 0.95446 0.90077 1.21891 1.00701 0.92754 0.97887 1.21709 1.00671 0.96194 0.96534 1.20691 0.96050 0.83921 0.96353 1.42592 1.68029 1.06393 1.21828 1.19668 1.28795 0.92200 0.97581 0.91262 1.25610 1.01685 0.98088 1.01343 1.69820 1.45979 1.12344 1.33756 0.85029 0.77265 0.78434 0.78760 1.19405 1.21530 1.21505 0.92568 0.94480 0.91538 0.90805 0.90255 0.87485 0.91152 0.89250 0.88996 0.80693 0.74166 0.92478 0.91038 0.92136 0.91750 0.97381 0.97366 0.79274 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.19 71.98 0.59 -2.43 16 2 C -0.10 -2.02 2.27 -10.71 -0.02 -2.04 16 3 H 0.08 1.75 6.87 -2.39 -0.02 1.74 16 4 C -0.11 -1.37 5.43 30.62 0.17 -1.20 16 5 C -0.13 -1.18 5.74 30.67 0.18 -1.00 16 6 C 0.09 1.06 6.02 86.36 0.52 1.58 16 7 N -0.59 -11.95 2.41 -799.67 -1.93 -13.87 16 8 C 0.59 14.76 7.41 86.45 0.64 15.40 16 9 O -0.55 -18.73 12.63 -4.30 -0.05 -18.79 16 10 C -0.32 -6.18 5.61 23.88 0.13 -6.04 16 11 C 0.10 2.06 11.27 84.23 0.95 3.01 16 12 N -0.50 -9.05 10.51 -202.57 -2.13 -11.18 16 13 C 0.03 0.26 12.22 130.60 1.60 1.86 16 14 S 0.24 2.43 19.95 -56.49 -1.13 1.31 16 15 C 0.16 3.67 2.73 44.98 0.12 3.79 16 16 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 17 C -0.09 -2.98 2.65 30.60 0.08 -2.90 16 18 C -0.11 -4.06 4.78 30.59 0.15 -3.91 16 19 C 0.16 7.27 6.26 86.38 0.54 7.81 16 20 N -0.75 -41.69 5.60 -343.46 -1.92 -43.61 16 21 C -0.25 -15.18 9.99 84.03 0.84 -14.34 16 22 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 24 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 25 Si 0.98 48.30 29.55 68.60 2.03 50.32 16 26 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 29 H 0.06 1.10 5.97 -2.39 -0.01 1.08 16 30 H 0.04 0.99 6.23 -2.39 -0.01 0.97 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.07 0.69 6.34 -2.39 -0.02 0.68 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.88 3.73 -17.88 -0.07 0.82 16 38 H 0.18 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.24 0.27 8.06 -2.92 -0.02 0.25 16 40 H 0.06 1.97 5.54 -2.39 -0.01 1.96 16 41 H 0.07 2.61 6.18 -2.39 -0.01 2.60 16 42 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.06 2.26 6.72 -2.39 -0.02 2.24 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.38 21.67 7.67 -92.71 -0.71 20.96 16 47 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -78.07 371.87 2.32 -75.75 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.22 Total: 25.71 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 6.94 Total: -4.50 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -5.70 Total: -129.80 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.32 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.13 Total: 1.31 kcal Total: -78.07 2.32 -75.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692108283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.146 kcal (2) G-P(sol) polarization free energy of solvation -78.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds