Wall clock time and date at job start Tue Mar 31 2020 19:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47386 * 2 1 4 4 H 1.09001 * 109.87308 * 55.82559 * 3 2 1 5 5 C 1.54327 * 109.88243 * 294.81429 * 3 2 1 6 6 H 1.08998 * 110.71961 * 336.75013 * 5 3 2 7 7 N 1.46501 * 110.87526 * 99.94901 * 5 3 2 8 8 C 1.34770 * 120.00257 * 200.06362 * 7 5 3 9 9 O 1.21279 * 119.99896 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00210 * 180.02562 * 8 7 5 11 11 C 1.53001 * 109.47401 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47097 * 179.97438 * 11 10 8 13 13 N 1.29022 * 124.91229 * 90.00031 * 12 11 10 14 14 C 1.31781 * 117.12487 * 179.97438 * 13 12 11 15 15 C 1.50696 * 122.75245 * 180.02562 * 14 13 12 16 16 C 1.33640 * 114.49911 * 0.02562 * 14 13 12 17 17 S 1.70970 * 124.91820 * 269.69700 * 12 11 10 18 18 C 1.55159 * 102.94215 * 218.38489 * 5 3 2 19 19 C 1.54911 * 101.61337 * 35.48239 * 18 5 3 20 20 N 1.47016 * 109.88657 * 177.00313 * 3 2 1 21 21 C 1.36945 * 125.64773 * 298.41700 * 20 3 2 22 22 H 1.07998 * 119.99643 * 345.38265 * 21 20 3 23 23 C 1.38804 * 120.00025 * 165.38893 * 21 20 3 24 24 N 1.31623 * 120.00123 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99937 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47185 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47144 * 120.00288 * 25 23 21 28 28 H 1.48503 * 109.47149 * 239.99609 * 25 23 21 29 29 H 1.09002 * 109.46966 * 305.55982 * 1 2 3 30 30 H 1.08996 * 109.47661 * 65.56109 * 1 2 3 31 31 H 1.08997 * 109.47084 * 185.56595 * 1 2 3 32 32 H 1.09004 * 109.47048 * 240.00330 * 2 1 3 33 33 H 1.08997 * 109.47627 * 120.00643 * 2 1 3 34 34 H 0.97004 * 119.99784 * 20.06634 * 7 5 3 35 35 H 1.09007 * 109.47030 * 299.99770 * 10 8 7 36 36 H 1.09004 * 109.47780 * 59.99392 * 10 8 7 37 37 H 1.08990 * 109.46957 * 299.99815 * 11 10 8 38 38 H 1.09000 * 109.46964 * 59.99793 * 11 10 8 39 39 H 1.09008 * 109.46926 * 90.00126 * 15 14 13 40 40 H 1.08999 * 109.47615 * 210.00060 * 15 14 13 41 41 H 1.08996 * 109.47275 * 330.00418 * 15 14 13 42 42 H 1.08005 * 126.04099 * 179.97438 * 16 14 13 43 43 H 1.08995 * 111.00486 * 153.57076 * 18 5 3 44 44 H 1.08994 * 111.00547 * 277.39150 * 18 5 3 45 45 H 1.08996 * 110.37135 * 81.85269 * 19 18 5 46 46 H 1.09006 * 110.36694 * 204.17213 * 19 18 5 47 47 H 0.97002 * 119.99782 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6207 1.9838 0.8481 5 6 1.6408 2.1404 -1.3173 6 1 1.4657 1.4071 -2.1045 7 7 0.4579 2.9828 -1.1240 8 6 -0.2881 3.3506 -2.1845 9 8 0.0201 2.9844 -3.2989 10 6 -1.5045 4.2177 -1.9858 11 6 -2.1655 4.4869 -3.3391 12 6 -3.3823 5.3535 -3.1402 13 7 -3.3817 6.6436 -3.1621 14 6 -4.5367 7.2483 -2.9701 15 6 -4.6817 8.7483 -2.9707 16 6 -5.5690 6.4223 -2.7750 17 16 -4.9646 4.7695 -2.8602 18 6 2.8855 3.0079 -1.6421 19 6 4.0372 2.0999 -1.1432 20 7 3.5084 1.4537 0.0723 21 6 4.2608 0.9474 1.0983 22 1 3.7948 0.7088 2.0430 23 6 5.6224 0.7410 0.9243 24 7 6.1903 1.0324 -0.2268 25 14 6.6489 0.0510 2.3242 26 1 5.7792 -0.1906 3.5033 27 1 7.2709 -1.2284 1.8980 28 1 7.7126 1.0228 2.6837 29 1 -0.3633 0.5977 0.8360 30 1 -0.3634 0.4251 -0.9355 31 1 -0.3633 -1.0228 0.0997 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.2117 3.2760 -0.2328 35 1 -2.2111 3.7077 -1.3309 36 1 -1.2067 5.1633 -1.5327 37 1 -1.4588 4.9970 -3.9935 38 1 -2.4634 3.5415 -3.7924 39 1 -4.8940 9.0924 -3.9830 40 1 -5.5004 9.0345 -2.3104 41 1 -3.7555 9.2029 -2.6192 42 1 -6.5936 6.7160 -2.6001 43 1 2.9669 3.1887 -2.7138 44 1 2.8617 3.9475 -1.0901 45 1 4.2821 1.3500 -1.8953 46 1 4.9159 2.6989 -0.9035 47 1 7.1418 0.8878 -0.3485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692194935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:59 Heat of formation + Delta-G solvation = 14.959717 kcal Electronic energy + Delta-G solvation = -26588.784607 eV Core-core repulsion = 22898.420967 eV Total energy + Delta-G solvation = -3690.363640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25877 -39.72012 -37.78294 -34.43237 -33.99902 -32.76485 -31.80430 -31.23561 -29.03345 -27.99059 -27.01709 -25.89488 -24.28651 -22.64253 -21.93686 -20.51246 -20.11963 -20.00593 -19.40825 -17.97434 -16.95253 -16.81814 -15.98257 -15.62636 -15.33346 -15.17474 -14.75519 -14.17680 -14.03116 -13.93233 -13.76394 -13.49897 -13.17389 -13.07997 -12.88065 -12.76358 -12.56511 -12.15788 -12.00604 -11.93703 -11.65447 -11.62295 -11.36126 -11.14192 -10.90707 -10.84990 -10.60556 -10.45405 -10.27174 -10.05302 -9.93003 -9.78795 -9.72761 -9.66539 -9.59058 -8.98898 -8.65642 -8.56639 -6.81486 -5.76229 -3.12744 0.38202 1.05934 1.44560 2.45314 2.77688 3.29362 3.37961 3.43871 3.45956 3.79833 4.46213 4.53368 4.71544 4.80502 4.83895 4.90956 5.04875 5.23017 5.25540 5.32568 5.34805 5.35868 5.48106 5.52370 5.54358 5.68117 5.73758 5.80412 5.80725 5.85722 5.94628 6.04836 6.23190 6.30953 6.40588 6.46005 6.57566 6.69444 6.73476 6.94461 7.14249 7.46178 7.51137 7.60734 7.72542 7.78706 8.25403 8.40212 9.17181 9.78236 10.46042 11.35725 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024610 B = 0.002085 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.469322 B =13426.363374 C =13814.572555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.092 0.908 7 N -0.714 5.714 8 C 0.514 3.486 9 O -0.542 6.542 10 C -0.135 4.135 11 C -0.029 4.029 12 C 0.061 3.939 13 N -0.471 5.471 14 C 0.068 3.932 15 C -0.079 4.079 16 C -0.269 4.269 17 S 0.119 5.881 18 C -0.156 4.156 19 C 0.174 3.826 20 N -0.594 5.594 21 C -0.227 4.227 22 H 0.075 0.925 23 C -0.004 4.004 24 N -0.916 5.916 25 Si 0.910 3.090 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.175 0.825 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.028 0.972 46 H 0.073 0.927 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.152 10.119 -3.861 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.110 0.890 7 N -0.364 5.364 8 C 0.300 3.700 9 O -0.420 6.420 10 C -0.177 4.177 11 C -0.070 4.070 12 C -0.217 4.217 13 N -0.186 5.186 14 C -0.064 4.064 15 C -0.139 4.139 16 C -0.408 4.408 17 S 0.374 5.626 18 C -0.196 4.196 19 C 0.049 3.951 20 N -0.319 5.319 21 C -0.356 4.356 22 H 0.093 0.907 23 C -0.201 4.201 24 N -0.562 5.562 25 Si 0.740 3.260 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.193 0.807 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.092 0.908 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.640 9.065 -4.629 25.738 hybrid contribution 0.293 0.616 1.193 1.374 sum -23.347 9.681 -3.436 25.507 Atomic orbital electron populations 1.21768 0.97287 1.00500 1.00869 1.22020 0.93555 0.99207 1.02420 1.21066 0.87100 0.93322 0.93210 0.94788 1.22091 0.83507 0.92366 0.98643 0.89029 1.46078 1.28304 1.52365 1.09619 1.20347 0.84090 0.80667 0.84920 1.90712 1.71572 1.55789 1.23900 1.21636 0.96304 1.01274 0.98440 1.20010 0.91220 0.97949 0.97804 1.27107 0.99302 0.93111 1.02229 1.66155 1.27889 1.07788 1.16721 1.20353 0.86855 0.98463 1.00728 1.20370 1.03275 0.87411 1.02833 1.26810 1.04731 0.94741 1.14550 1.84077 1.03741 1.08646 1.66114 1.23414 0.96751 0.99020 1.00394 1.21442 0.93147 0.92897 0.87637 1.44466 0.98358 1.68312 1.20755 1.18977 0.89912 1.35786 0.90877 0.90675 1.24919 0.97265 1.00957 0.96984 1.69944 1.10601 1.52824 1.22842 0.86085 0.80261 0.78495 0.81144 1.20451 1.21701 1.21752 0.93469 0.93313 0.93696 0.92364 0.91727 0.76823 0.88777 0.88264 0.87726 0.88636 0.90618 0.90747 0.90440 0.80727 0.91866 0.92103 0.95410 0.90839 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.58 37.16 0.36 -1.72 16 2 C -0.13 -2.40 5.41 -26.73 -0.14 -2.55 16 3 C 0.16 3.12 2.94 -66.95 -0.20 2.93 16 4 H 0.03 0.64 7.70 -51.93 -0.40 0.24 16 5 C 0.14 2.42 1.92 -66.09 -0.13 2.30 16 6 H 0.09 1.75 7.34 -51.93 -0.38 1.37 16 7 N -0.71 -9.71 4.95 -52.03 -0.26 -9.97 16 8 C 0.51 6.91 7.83 -10.99 -0.09 6.83 16 9 O -0.54 -9.34 15.71 5.56 0.09 -9.25 16 10 C -0.13 -1.30 5.68 -27.88 -0.16 -1.45 16 11 C -0.03 -0.29 5.09 -27.88 -0.14 -0.43 16 12 C 0.06 0.61 6.64 -13.46 -0.09 0.52 16 13 N -0.47 -5.33 10.53 -8.06 -0.08 -5.41 16 14 C 0.07 0.63 6.74 -84.23 -0.57 0.07 16 15 C -0.08 -0.52 10.31 36.00 0.37 -0.15 16 16 C -0.27 -2.10 11.13 29.12 0.32 -1.78 16 17 S 0.12 0.96 23.18 -107.50 -2.49 -1.53 16 18 C -0.16 -3.04 6.76 -24.58 -0.17 -3.20 16 19 C 0.17 4.18 5.41 -2.51 -0.01 4.17 16 20 N -0.59 -14.52 3.13 -162.54 -0.51 -15.03 16 21 C -0.23 -6.09 9.75 -15.06 -0.15 -6.24 16 22 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 23 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16 24 N -0.92 -26.50 10.57 55.49 0.59 -25.91 16 25 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.68 7.40 -51.93 -0.38 0.30 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.06 1.26 7.90 -51.93 -0.41 0.85 16 34 H 0.40 4.46 8.32 -40.82 -0.34 4.13 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 39 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.18 0.90 8.06 -52.48 -0.42 0.47 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 46 H 0.07 1.96 6.93 -51.93 -0.36 1.60 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -32.04 394.98 -10.35 -42.39 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.73 Total: 3.00 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.88 Total: -0.92 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.26 Total: -56.33 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.04 -10.35 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692194935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.345 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds