Wall clock time and date at job start Tue Mar 31 2020 19:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21680 * 119.99584 * 359.97438 * 7 6 5 9 9 C 1.46680 * 120.00061 * 179.97438 * 7 6 5 10 10 S 1.76213 * 126.13039 * 0.02562 * 9 7 6 11 11 C 1.70954 * 90.31535 * 180.02562 * 10 9 7 12 12 C 1.50696 * 124.80582 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47163 * 269.99887 * 12 11 10 14 14 C 1.53005 * 117.50085 * 243.62151 * 13 12 11 15 15 C 1.52997 * 59.99874 * 252.51070 * 14 13 12 16 16 N 1.29432 * 110.38691 * 0.02562 * 11 10 9 17 17 C 1.30933 * 117.36530 * 359.70752 * 16 11 10 18 18 C 1.50705 * 122.90666 * 180.35222 * 17 16 11 19 19 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 20 20 C 1.36936 * 120.00314 * 274.99849 * 19 3 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 3 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 30 30 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 31 31 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 32 32 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 33 33 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 34 34 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 35 35 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 36 36 H 1.08995 * 109.47604 * 30.00017 * 12 11 10 37 37 H 1.09006 * 109.47255 * 149.99984 * 12 11 10 38 38 H 1.08996 * 115.54899 * 29.33231 * 13 12 11 39 39 H 1.08999 * 117.49902 * 0.02562 * 14 13 12 40 40 H 1.08996 * 117.49816 * 145.01719 * 14 13 12 41 41 H 1.09001 * 117.50246 * 252.50297 * 15 14 13 42 42 H 1.09003 * 117.50118 * 107.49196 * 15 14 13 43 43 H 1.09005 * 109.46720 * 270.19069 * 18 17 16 44 44 H 1.08998 * 109.47116 * 30.18807 * 18 17 16 45 45 H 1.08999 * 109.47243 * 150.19364 * 18 17 16 46 46 H 0.97000 * 120.00040 * 94.99981 * 19 3 2 47 47 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1659 2.1455 -0.2590 9 6 5.8843 4.4374 0.0325 10 16 4.9043 5.8803 0.2832 11 6 6.3128 6.8492 0.2785 12 6 6.3277 8.3460 0.4528 13 6 6.2128 9.0200 -0.9160 14 6 7.3937 9.8723 -1.3852 15 6 6.0920 10.5449 -0.9446 16 7 7.3644 6.1152 0.1040 17 6 7.1831 4.8250 -0.0260 18 6 8.3186 3.8547 -0.2266 19 7 1.6524 2.0975 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5383 22 6 0.0486 3.2944 2.5547 23 7 -1.1382 3.8528 2.6653 24 14 1.2421 3.3451 3.9909 25 1 1.0351 2.1507 4.8488 26 1 2.6352 3.3499 3.4768 27 1 1.0047 4.5748 4.7887 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.9954 0.8312 0.6659 34 1 3.8499 1.0377 -1.0961 35 1 3.4409 3.5484 0.1308 36 1 5.4872 8.6475 1.0779 37 1 7.2609 8.6471 0.9288 38 1 5.6657 8.4575 -1.6725 39 1 8.2526 9.9525 -0.7189 40 1 7.6237 9.8705 -2.4505 41 1 5.4657 10.9858 -1.7202 42 1 6.0943 11.0681 0.0117 43 1 8.5123 3.7376 -1.2929 44 1 9.2134 4.2359 0.2655 45 1 8.0514 2.8890 0.2023 46 1 2.2718 2.1231 1.9978 47 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698617395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:56 Heat of formation + Delta-G solvation = 30.450115 kcal Electronic energy + Delta-G solvation = -26671.573380 eV Core-core repulsion = 22981.881454 eV Total energy + Delta-G solvation = -3689.691926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41584 -39.18705 -37.78256 -36.88850 -33.93550 -32.76976 -32.39310 -30.33839 -29.42682 -29.16156 -27.38797 -23.84024 -23.46220 -22.67713 -22.59609 -21.22118 -20.93766 -20.31205 -19.39253 -18.06473 -17.72930 -16.76403 -16.05643 -15.77401 -15.38942 -15.35925 -14.70745 -14.50342 -14.20947 -14.14911 -13.85965 -13.46321 -13.24628 -13.01544 -12.91174 -12.83805 -12.61406 -12.51609 -12.41085 -11.83496 -11.79185 -11.61308 -11.35771 -11.21330 -11.02860 -10.74990 -10.73713 -10.45346 -10.35342 -10.33281 -10.05983 -10.01351 -9.68824 -9.56517 -9.53669 -9.03453 -8.96064 -8.72431 -7.39913 -5.86142 -3.22466 0.17077 1.10293 1.52988 2.37380 3.20953 3.28357 3.29770 3.34213 3.40010 3.44451 3.76493 4.40116 4.50337 4.52751 4.59216 4.78448 4.87422 5.03392 5.13496 5.16395 5.25089 5.26935 5.30732 5.36135 5.39722 5.58540 5.63061 5.71323 5.74073 5.79816 5.81434 5.83620 5.86129 5.87422 5.99057 6.22681 6.26068 6.41891 6.47364 6.54450 6.69382 6.89360 7.25745 7.50233 7.65593 7.89220 8.25032 8.32069 9.09598 9.82144 10.01236 11.31386 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003456 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.844246 B = 8100.478603 C = 9592.490106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.063 0.937 5 C 0.112 3.888 6 N -0.710 5.710 7 C 0.594 3.406 8 O -0.534 6.534 9 C -0.300 4.300 10 S 0.183 5.817 11 C 0.061 3.939 12 C -0.016 4.016 13 C -0.151 4.151 14 C -0.173 4.173 15 C -0.175 4.175 16 N -0.475 5.475 17 C 0.144 3.856 18 C -0.087 4.087 19 N -0.747 5.747 20 C -0.243 4.243 21 H 0.096 0.904 22 C 0.010 3.990 23 N -0.929 5.929 24 Si 0.876 3.124 25 H -0.284 1.284 26 H -0.278 1.278 27 H -0.291 1.291 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.408 0.592 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.362 0.638 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.505 7.657 -7.463 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.012 4.012 6 N -0.361 5.361 7 C 0.379 3.621 8 O -0.414 6.414 9 C -0.424 4.424 10 S 0.442 5.558 11 C -0.214 4.214 12 C -0.057 4.057 13 C -0.170 4.170 14 C -0.210 4.210 15 C -0.212 4.212 16 N -0.190 5.190 17 C 0.006 3.994 18 C -0.146 4.146 19 N -0.391 5.391 20 C -0.373 4.373 21 H 0.113 0.887 22 C -0.186 4.186 23 N -0.577 5.577 24 Si 0.707 3.293 25 H -0.211 1.211 26 H -0.204 1.204 27 H -0.217 1.217 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.244 0.756 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.164 7.587 -7.506 18.543 hybrid contribution 1.020 -0.145 1.121 1.522 sum 16.184 7.442 -6.385 18.923 Atomic orbital electron populations 1.21781 0.95138 0.99756 1.03802 1.22030 0.97408 0.97657 1.00181 1.20563 0.89643 0.93186 0.90848 0.91890 1.21801 0.95739 0.81873 1.01790 1.45937 1.06425 1.11271 1.72509 1.16675 0.82674 0.85756 0.77024 1.90746 1.55698 1.44411 1.50525 1.25556 0.97527 0.98595 1.20698 1.84356 1.10668 0.96932 1.63874 1.27247 0.91714 1.01362 1.01122 1.19913 1.04682 0.84365 0.96708 1.22173 1.03971 0.93259 0.97645 1.23045 0.92294 1.03676 1.01983 1.23016 1.00757 0.93966 1.03439 1.66068 1.31609 1.04406 1.16903 1.20629 0.93458 0.89952 0.95358 1.20630 0.93575 0.97304 1.03047 1.42848 1.16873 1.67708 1.11688 1.19050 0.90549 1.27812 0.99881 0.88675 1.24635 0.96306 1.00259 0.97436 1.69688 1.19417 1.41709 1.26841 0.86690 0.81169 0.77471 0.84020 1.21085 1.20392 1.21715 0.94813 0.89324 0.93867 0.93477 0.92593 0.91487 0.91023 0.75590 0.88694 0.88375 0.87512 0.88470 0.88771 0.88449 0.88437 0.90291 0.90978 0.88189 0.80526 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 37.16 0.34 -2.25 16 2 C -0.13 -2.13 5.61 -26.73 -0.15 -2.28 16 3 C 0.17 2.91 2.59 -67.93 -0.18 2.73 16 4 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 5 C 0.11 1.77 5.23 -4.05 -0.02 1.75 16 6 N -0.71 -11.61 5.38 -61.62 -0.33 -11.94 16 7 C 0.59 9.89 7.78 -12.85 -0.10 9.79 16 8 O -0.53 -9.67 14.27 5.21 0.07 -9.60 16 9 C -0.30 -4.56 6.48 -37.10 -0.24 -4.80 16 10 S 0.18 2.42 22.31 -107.50 -2.40 0.02 16 11 C 0.06 0.74 6.59 -13.29 -0.09 0.65 16 12 C -0.02 -0.14 6.07 -27.89 -0.17 -0.31 16 13 C -0.15 -1.26 5.72 -90.62 -0.52 -1.78 16 14 C -0.17 -1.28 10.18 -26.73 -0.27 -1.56 16 15 C -0.17 -1.19 10.25 -26.73 -0.27 -1.46 16 16 N -0.48 -6.56 10.50 -7.70 -0.08 -6.65 16 17 C 0.14 2.10 6.79 -83.89 -0.57 1.53 16 18 C -0.09 -1.10 9.69 36.01 0.35 -0.75 16 19 N -0.75 -15.83 4.31 -53.43 -0.23 -16.06 16 20 C -0.24 -6.15 8.24 -15.06 -0.12 -6.27 16 21 H 0.10 2.58 7.55 -52.49 -0.40 2.19 16 22 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 23 N -0.93 -27.47 13.97 55.49 0.78 -26.69 16 24 Si 0.88 21.07 27.74 -169.99 -4.72 16.35 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.33 6.51 56.52 0.37 -5.96 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.88 5.99 -51.93 -0.31 1.57 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.41 6.81 7.32 -40.82 -0.30 6.51 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.81 7.88 -51.93 -0.41 0.41 16 38 H 0.11 0.97 8.07 -51.93 -0.42 0.55 16 39 H 0.10 0.68 8.03 -51.93 -0.42 0.27 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 1.39 6.01 -51.93 -0.31 1.08 16 46 H 0.36 7.85 5.65 -40.82 -0.23 7.62 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -30.03 395.72 -10.51 -40.54 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -7.46 Total: 12.90 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.11 Total: -4.84 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.13 Total: -61.34 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.72 Total: 16.35 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.40 Total: 0.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.03 -10.51 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698617395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.991 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds