Wall clock time and date at job start Tue Mar 31 2020 19:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21680 * 119.99584 * 359.97438 * 7 6 5 9 9 C 1.46680 * 120.00061 * 179.97438 * 7 6 5 10 10 S 1.76213 * 126.13039 * 0.02562 * 9 7 6 11 11 C 1.70954 * 90.31535 * 180.02562 * 10 9 7 12 12 C 1.50696 * 124.80582 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47163 * 269.99887 * 12 11 10 14 14 C 1.53005 * 117.50085 * 243.62151 * 13 12 11 15 15 C 1.52997 * 59.99874 * 252.51070 * 14 13 12 16 16 N 1.29432 * 110.38691 * 0.02562 * 11 10 9 17 17 C 1.30933 * 117.36530 * 359.70752 * 16 11 10 18 18 C 1.50705 * 122.90666 * 180.35222 * 17 16 11 19 19 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 20 20 C 1.36936 * 120.00314 * 274.99849 * 19 3 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 3 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 30 30 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 31 31 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 32 32 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 33 33 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 34 34 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 35 35 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 36 36 H 1.08995 * 109.47604 * 30.00017 * 12 11 10 37 37 H 1.09006 * 109.47255 * 149.99984 * 12 11 10 38 38 H 1.08996 * 115.54899 * 29.33231 * 13 12 11 39 39 H 1.08999 * 117.49902 * 0.02562 * 14 13 12 40 40 H 1.08996 * 117.49816 * 145.01719 * 14 13 12 41 41 H 1.09001 * 117.50246 * 252.50297 * 15 14 13 42 42 H 1.09003 * 117.50118 * 107.49196 * 15 14 13 43 43 H 1.09005 * 109.46720 * 270.19069 * 18 17 16 44 44 H 1.08998 * 109.47116 * 30.18807 * 18 17 16 45 45 H 1.08999 * 109.47243 * 150.19364 * 18 17 16 46 46 H 0.97000 * 120.00040 * 94.99981 * 19 3 2 47 47 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1659 2.1455 -0.2590 9 6 5.8843 4.4374 0.0325 10 16 4.9043 5.8803 0.2832 11 6 6.3128 6.8492 0.2785 12 6 6.3277 8.3460 0.4528 13 6 6.2128 9.0200 -0.9160 14 6 7.3937 9.8723 -1.3852 15 6 6.0920 10.5449 -0.9446 16 7 7.3644 6.1152 0.1040 17 6 7.1831 4.8250 -0.0260 18 6 8.3186 3.8547 -0.2266 19 7 1.6524 2.0975 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5383 22 6 0.0486 3.2944 2.5547 23 7 -1.1382 3.8528 2.6653 24 14 1.2421 3.3451 3.9909 25 1 1.0351 2.1507 4.8488 26 1 2.6352 3.3499 3.4768 27 1 1.0047 4.5748 4.7887 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.9954 0.8312 0.6659 34 1 3.8499 1.0377 -1.0961 35 1 3.4409 3.5484 0.1308 36 1 5.4872 8.6475 1.0779 37 1 7.2609 8.6471 0.9288 38 1 5.6657 8.4575 -1.6725 39 1 8.2526 9.9525 -0.7189 40 1 7.6237 9.8705 -2.4505 41 1 5.4657 10.9858 -1.7202 42 1 6.0943 11.0681 0.0117 43 1 8.5123 3.7376 -1.2929 44 1 9.2134 4.2359 0.2655 45 1 8.0514 2.8890 0.2023 46 1 2.2718 2.1231 1.9978 47 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698617395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:55 Heat of formation + Delta-G solvation = 12.291834 kcal Electronic energy + Delta-G solvation = -26672.360782 eV Core-core repulsion = 22981.881454 eV Total energy + Delta-G solvation = -3690.479328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52649 -40.38733 -38.53753 -38.28699 -35.39715 -34.20322 -33.70572 -32.09116 -30.54078 -30.19903 -28.68447 -25.43939 -24.46924 -24.12846 -23.20809 -22.45183 -21.78497 -21.60733 -20.67374 -19.53054 -19.09935 -17.98179 -17.17838 -17.06699 -16.62458 -16.39536 -16.03492 -15.69636 -15.48922 -15.25617 -14.94093 -14.74395 -14.66991 -14.46680 -14.36886 -14.05362 -13.74321 -13.51444 -13.42225 -13.11784 -12.92840 -12.89011 -12.51166 -12.40715 -12.33338 -12.31944 -12.13298 -11.90658 -11.61099 -11.41924 -11.38341 -11.21431 -10.96773 -10.90765 -10.77728 -10.65622 -10.20020 -9.80849 -9.30656 -7.95851 -5.27955 -0.89197 0.06725 0.48289 1.27985 1.37683 1.40093 1.45825 1.99253 2.05263 2.50454 2.79744 2.91298 3.36143 3.55087 3.67534 3.70325 3.81107 3.84367 3.98070 4.02826 4.12188 4.29566 4.41209 4.42778 4.54628 4.55224 4.66172 4.68840 4.70204 4.74658 4.80767 4.83318 4.87383 5.05373 5.05710 5.07475 5.18582 5.24355 5.25698 5.28718 5.38400 5.51284 5.73190 5.86869 6.26591 6.30491 6.50679 6.97096 7.12262 7.86665 8.04987 9.25139 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003456 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.844246 B = 8100.478603 C = 9592.490106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.167 3.833 4 H 0.060 0.940 5 C 0.119 3.881 6 N -0.713 5.713 7 C 0.594 3.406 8 O -0.553 6.553 9 C -0.329 4.329 10 S 0.180 5.820 11 C 0.079 3.921 12 C -0.016 4.016 13 C -0.165 4.165 14 C -0.175 4.175 15 C -0.162 4.162 16 N -0.490 5.490 17 C 0.144 3.856 18 C -0.083 4.083 19 N -0.748 5.748 20 C -0.206 4.206 21 H 0.071 0.929 22 C -0.054 4.054 23 N -0.980 5.980 24 Si 0.934 3.066 25 H -0.289 1.289 26 H -0.258 1.258 27 H -0.300 1.300 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.405 0.595 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.362 0.638 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.551 7.951 -7.946 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.059 3.941 4 H 0.078 0.922 5 C -0.004 4.004 6 N -0.364 5.364 7 C 0.380 3.620 8 O -0.434 6.434 9 C -0.453 4.453 10 S 0.439 5.561 11 C -0.196 4.196 12 C -0.057 4.057 13 C -0.185 4.185 14 C -0.212 4.212 15 C -0.199 4.199 16 N -0.205 5.205 17 C 0.006 3.994 18 C -0.142 4.142 19 N -0.391 5.391 20 C -0.337 4.337 21 H 0.089 0.911 22 C -0.246 4.246 23 N -0.631 5.631 24 Si 0.763 3.237 25 H -0.215 1.215 26 H -0.183 1.183 27 H -0.227 1.227 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.241 0.759 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.128 0.872 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.195 0.805 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.250 7.845 -8.024 20.579 hybrid contribution 0.404 -0.223 1.134 1.224 sum 17.654 7.622 -6.890 20.427 Atomic orbital electron populations 1.21693 0.96316 1.00481 1.01622 1.21952 0.96159 0.96674 1.01902 1.20723 0.90963 0.93654 0.88784 0.92234 1.21749 0.94016 0.81837 1.02832 1.45962 1.06442 1.11335 1.72618 1.16820 0.82445 0.86215 0.76474 1.90729 1.56002 1.45179 1.51514 1.25460 0.98205 0.98550 1.23058 1.84337 1.11094 0.96525 1.64164 1.27856 0.90785 1.02511 0.98492 1.20115 1.05960 0.82092 0.97526 1.22116 1.05097 0.94246 0.97030 1.23122 0.92527 1.03269 1.02257 1.23105 1.00089 0.92568 1.04164 1.66155 1.32020 1.04199 1.18114 1.20955 0.93705 0.90556 0.94229 1.20628 0.93624 0.96318 1.03653 1.42843 1.15349 1.67755 1.13191 1.18960 0.91111 1.25203 0.98375 0.91140 1.25221 0.97761 1.01500 1.00097 1.69840 1.21674 1.44271 1.27330 0.85733 0.80314 0.76601 0.81017 1.21545 1.18272 1.22667 0.92719 0.93505 0.93911 0.90064 0.92487 0.91496 0.89128 0.75889 0.87161 0.87221 0.88597 0.87952 0.88653 0.87869 0.87233 0.89415 0.89454 0.89501 0.80521 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.18 71.98 0.66 -4.21 16 2 C -0.13 -3.79 5.61 30.60 0.17 -3.62 16 3 C 0.17 5.53 2.59 44.99 0.12 5.64 16 4 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.12 3.53 5.23 86.38 0.45 3.98 16 6 N -0.71 -22.44 5.38 -467.10 -2.51 -24.96 16 7 C 0.59 19.25 7.78 86.45 0.67 19.93 16 8 O -0.55 -19.49 14.27 -4.29 -0.06 -19.55 16 9 C -0.33 -9.76 6.48 23.88 0.15 -9.60 16 10 S 0.18 4.59 22.31 -56.49 -1.26 3.33 16 11 C 0.08 1.79 6.59 88.46 0.58 2.38 16 12 C -0.02 -0.26 6.07 29.85 0.18 -0.08 16 13 C -0.16 -2.47 5.72 -10.79 -0.06 -2.53 16 14 C -0.17 -2.24 10.18 30.59 0.31 -1.93 16 15 C -0.16 -1.83 10.25 30.59 0.31 -1.51 16 16 N -0.49 -12.83 10.50 -178.29 -1.87 -14.70 16 17 C 0.14 4.04 6.79 42.10 0.29 4.33 16 18 C -0.08 -2.02 9.69 71.24 0.69 -1.33 16 19 N -0.75 -31.01 4.31 -322.95 -1.39 -32.40 16 20 C -0.21 -10.47 8.24 84.03 0.69 -9.78 16 21 H 0.07 3.92 7.55 -2.91 -0.02 3.90 16 22 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 23 N -0.98 -59.60 13.97 21.65 0.30 -59.30 16 24 Si 0.93 43.82 27.74 68.60 1.90 45.72 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.26 -11.06 6.51 99.48 0.65 -10.41 16 27 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.98 5.99 -2.39 -0.01 1.96 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.41 13.18 7.32 -92.71 -0.68 12.50 16 36 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 1.53 7.88 -2.38 -0.02 1.52 16 38 H 0.10 1.65 8.07 -2.39 -0.02 1.63 16 39 H 0.10 1.21 8.03 -2.39 -0.02 1.19 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.09 2.36 6.01 -2.39 -0.01 2.35 16 46 H 0.36 15.16 5.65 -92.71 -0.52 14.63 16 47 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -65.11 395.72 0.52 -64.59 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.27 Total: 38.12 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 5.69 Total: -0.86 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -5.48 Total: -131.35 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.72 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.26 Total: 3.33 kcal Total: -65.11 0.52 -64.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698617395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.878 kcal (2) G-P(sol) polarization free energy of solvation -65.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds