Wall clock time and date at job start Tue Mar 31 2020 19:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21680 * 120.00123 * 359.97438 * 7 6 5 9 9 C 1.46682 * 119.99579 * 179.97438 * 7 6 5 10 10 S 1.76215 * 126.13349 * 0.02562 * 9 7 6 11 11 C 1.70958 * 90.31566 * 180.02562 * 10 9 7 12 12 C 1.50690 * 124.80624 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47041 * 270.00182 * 12 11 10 14 14 C 1.53003 * 117.49535 * 243.61937 * 13 12 11 15 15 C 1.52989 * 60.00143 * 252.50922 * 14 13 12 16 16 N 1.29428 * 110.38950 * 359.97438 * 11 10 9 17 17 C 1.30943 * 117.36554 * 359.71137 * 16 11 10 18 18 C 1.50704 * 122.90669 * 180.34308 * 17 16 11 19 19 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 29 29 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 30 30 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 32 32 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 33 33 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 34 34 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 35 35 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.09002 * 109.47094 * 29.99897 * 12 11 10 37 37 H 1.08994 * 109.47531 * 149.99974 * 12 11 10 38 38 H 1.08994 * 115.55384 * 29.32622 * 13 12 11 39 39 H 1.09003 * 117.50300 * 0.02562 * 14 13 12 40 40 H 1.09006 * 117.49874 * 145.01942 * 14 13 12 41 41 H 1.09001 * 117.49951 * 252.51143 * 15 14 13 42 42 H 1.09007 * 117.50266 * 107.48834 * 15 14 13 43 43 H 1.08996 * 109.47299 * 270.19326 * 18 17 16 44 44 H 1.08994 * 109.47003 * 30.19753 * 18 17 16 45 45 H 1.09002 * 109.47037 * 150.19093 * 18 17 16 46 46 H 0.97000 * 119.99792 * 264.99726 * 19 3 2 47 47 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1661 2.1452 0.2577 9 6 5.8846 4.4370 -0.0346 10 16 4.9045 5.8801 -0.2840 11 6 6.3134 6.8486 -0.2832 12 6 6.3284 8.3453 -0.4574 13 6 6.4493 8.6845 -1.9444 14 6 7.7065 9.4284 -2.3993 15 6 6.3638 10.1595 -2.3418 16 7 7.3652 6.1143 -0.1107 17 6 7.1828 4.8256 0.0323 18 6 8.3171 3.8570 0.2475 19 7 1.6524 2.0975 -1.2518 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0506 3.2991 -2.5530 23 7 -1.1362 3.8574 -2.6635 24 14 1.2435 3.3485 -3.9896 25 1 1.0358 2.1538 -4.8468 26 1 1.0063 4.5780 -4.7879 27 1 2.6369 3.3530 -3.4759 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8500 1.0377 1.0960 34 1 3.9955 0.8311 -0.6660 35 1 3.4411 3.5483 -0.1315 36 1 5.4036 8.7663 -0.0627 37 1 7.1777 8.7653 0.0813 38 1 6.0213 7.9530 -2.6298 39 1 8.4477 9.6759 -1.6393 40 1 8.1060 9.1863 -3.3842 41 1 5.8799 10.3984 -3.2888 42 1 6.2213 10.8883 -1.5438 43 1 8.6790 3.5011 -0.7170 44 1 9.1272 4.3582 0.7772 45 1 7.9654 3.0111 0.8383 46 1 2.2720 2.1232 -1.9978 47 1 -1.3915 4.2943 -3.4911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698617399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:59 Heat of formation + Delta-G solvation = 30.410043 kcal Electronic energy + Delta-G solvation = -26729.538167 eV Core-core repulsion = 23039.844504 eV Total energy + Delta-G solvation = -3689.693663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.41407 -39.18538 -37.76194 -36.88785 -33.93560 -32.76678 -32.39497 -30.33941 -29.42265 -29.16152 -27.38779 -23.83934 -23.45790 -22.65379 -22.59428 -21.22105 -20.91809 -20.31277 -19.39143 -18.06300 -17.73080 -16.76107 -16.04408 -15.76629 -15.45718 -15.27190 -14.73120 -14.50226 -14.24475 -14.04505 -13.90700 -13.46089 -13.24893 -13.00548 -12.91794 -12.83875 -12.60679 -12.52204 -12.39921 -11.81120 -11.77427 -11.61939 -11.35784 -11.21152 -11.03170 -10.75116 -10.71418 -10.45492 -10.35206 -10.31228 -10.06021 -10.01536 -9.68522 -9.56708 -9.53771 -9.03605 -8.95991 -8.72396 -7.40091 -5.86291 -3.22568 0.17100 1.10351 1.53010 2.37367 3.20990 3.28372 3.29447 3.33906 3.39679 3.46791 3.76987 4.41912 4.50116 4.54179 4.61470 4.80278 4.87388 5.03642 5.14280 5.17117 5.25138 5.26947 5.31450 5.38012 5.39580 5.61110 5.63797 5.71127 5.74040 5.80885 5.82968 5.83511 5.86193 5.90315 5.99046 6.22611 6.25879 6.41842 6.47284 6.54463 6.69331 6.89348 7.25810 7.50235 7.65580 7.89065 8.25007 8.31867 9.09436 9.81999 10.01134 11.31227 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003742 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.218478 B = 7480.128666 C = 9508.785768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.063 0.937 5 C 0.112 3.888 6 N -0.710 5.710 7 C 0.594 3.406 8 O -0.534 6.534 9 C -0.300 4.300 10 S 0.183 5.817 11 C 0.061 3.939 12 C -0.015 4.015 13 C -0.152 4.152 14 C -0.173 4.173 15 C -0.174 4.174 16 N -0.475 5.475 17 C 0.144 3.856 18 C -0.087 4.087 19 N -0.747 5.747 20 C -0.244 4.244 21 H 0.096 0.904 22 C 0.010 3.990 23 N -0.929 5.929 24 Si 0.876 3.124 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.362 0.638 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.655 7.428 5.565 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.012 4.012 6 N -0.361 5.361 7 C 0.379 3.621 8 O -0.414 6.414 9 C -0.424 4.424 10 S 0.441 5.559 11 C -0.215 4.215 12 C -0.055 4.055 13 C -0.172 4.172 14 C -0.210 4.210 15 C -0.211 4.211 16 N -0.190 5.190 17 C 0.006 3.994 18 C -0.146 4.146 19 N -0.391 5.391 20 C -0.373 4.373 21 H 0.113 0.887 22 C -0.186 4.186 23 N -0.576 5.576 24 Si 0.706 3.294 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.312 7.360 5.631 17.898 hybrid contribution 1.031 -0.161 -1.261 1.637 sum 16.343 7.199 4.371 18.386 Atomic orbital electron populations 1.21780 0.95136 0.99758 1.03805 1.22027 0.97411 0.97650 1.00183 1.20566 0.89642 0.93194 0.90840 0.91879 1.21805 0.95741 0.81871 1.01793 1.45939 1.06431 1.11274 1.72501 1.16674 0.82663 0.85770 0.77018 1.90746 1.55772 1.44316 1.50549 1.25558 0.97576 0.98664 1.20580 1.84356 1.10623 0.96941 1.63931 1.27252 0.91667 1.01491 1.01042 1.19902 1.04501 0.85446 0.95692 1.22191 1.03789 0.95830 0.95415 1.23043 0.91138 1.03753 1.03040 1.23014 1.00797 0.93939 1.03384 1.66070 1.31516 1.04501 1.16898 1.20635 0.93460 0.89983 0.95319 1.20628 0.93772 0.96752 1.03400 1.42849 1.16871 1.67719 1.11683 1.19052 0.90590 1.27655 1.00013 0.88661 1.24631 0.96327 1.00188 0.97452 1.69682 1.19400 1.41734 1.26816 0.86697 0.81184 0.77463 0.84051 1.21088 1.21724 1.20397 0.93864 0.89321 0.94810 0.92597 0.93471 0.91015 0.91491 0.75589 0.88726 0.88375 0.87491 0.88463 0.88776 0.88438 0.88434 0.90302 0.90975 0.88182 0.80533 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 37.16 0.34 -2.25 16 2 C -0.13 -2.13 5.61 -26.73 -0.15 -2.28 16 3 C 0.17 2.91 2.59 -67.93 -0.18 2.73 16 4 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 5 C 0.11 1.77 5.23 -4.04 -0.02 1.75 16 6 N -0.71 -11.62 5.38 -61.61 -0.33 -11.95 16 7 C 0.59 9.90 7.78 -12.85 -0.10 9.80 16 8 O -0.53 -9.67 14.27 5.21 0.07 -9.60 16 9 C -0.30 -4.57 6.48 -37.09 -0.24 -4.81 16 10 S 0.18 2.42 22.31 -107.50 -2.40 0.02 16 11 C 0.06 0.74 6.59 -13.30 -0.09 0.65 16 12 C -0.01 -0.13 6.07 -27.89 -0.17 -0.30 16 13 C -0.15 -1.38 5.72 -90.62 -0.52 -1.90 16 14 C -0.17 -1.38 10.18 -26.74 -0.27 -1.65 16 15 C -0.17 -1.28 10.25 -26.74 -0.27 -1.56 16 16 N -0.47 -6.57 10.50 -7.70 -0.08 -6.65 16 17 C 0.14 2.10 6.79 -83.89 -0.57 1.53 16 18 C -0.09 -1.10 9.69 36.01 0.35 -0.75 16 19 N -0.75 -15.85 4.31 -53.42 -0.23 -16.08 16 20 C -0.24 -6.16 8.23 -15.06 -0.12 -6.28 16 21 H 0.10 2.59 7.55 -52.49 -0.40 2.19 16 22 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 23 N -0.93 -27.46 13.97 55.49 0.78 -26.68 16 24 Si 0.88 21.10 27.74 -169.99 -4.72 16.38 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.35 6.51 56.52 0.37 -5.98 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.88 5.99 -51.93 -0.31 1.57 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.41 6.81 7.32 -40.82 -0.30 6.51 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.79 7.87 -51.93 -0.41 0.39 16 38 H 0.11 1.11 8.07 -51.93 -0.42 0.69 16 39 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.10 1.37 6.02 -51.93 -0.31 1.06 16 46 H 0.36 7.86 5.66 -40.82 -0.23 7.63 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -30.06 395.73 -10.51 -40.56 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.46 Total: 13.16 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.11 Total: -5.13 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.13 Total: -61.36 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.72 Total: 16.38 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.40 Total: 0.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.06 -10.51 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698617399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.974 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds