Wall clock time and date at job start Tue Mar 31 2020 19:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21680 * 120.00123 * 359.97438 * 7 6 5 9 9 C 1.46682 * 119.99579 * 179.97438 * 7 6 5 10 10 S 1.76215 * 126.13349 * 0.02562 * 9 7 6 11 11 C 1.70958 * 90.31566 * 180.02562 * 10 9 7 12 12 C 1.50690 * 124.80624 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47041 * 270.00182 * 12 11 10 14 14 C 1.53003 * 117.49535 * 243.61937 * 13 12 11 15 15 C 1.52989 * 60.00143 * 252.50922 * 14 13 12 16 16 N 1.29428 * 110.38950 * 359.97438 * 11 10 9 17 17 C 1.30943 * 117.36554 * 359.71137 * 16 11 10 18 18 C 1.50704 * 122.90669 * 180.34308 * 17 16 11 19 19 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 29 29 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 30 30 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 32 32 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 33 33 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 34 34 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 35 35 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.09002 * 109.47094 * 29.99897 * 12 11 10 37 37 H 1.08994 * 109.47531 * 149.99974 * 12 11 10 38 38 H 1.08994 * 115.55384 * 29.32622 * 13 12 11 39 39 H 1.09003 * 117.50300 * 0.02562 * 14 13 12 40 40 H 1.09006 * 117.49874 * 145.01942 * 14 13 12 41 41 H 1.09001 * 117.49951 * 252.51143 * 15 14 13 42 42 H 1.09007 * 117.50266 * 107.48834 * 15 14 13 43 43 H 1.08996 * 109.47299 * 270.19326 * 18 17 16 44 44 H 1.08994 * 109.47003 * 30.19753 * 18 17 16 45 45 H 1.09002 * 109.47037 * 150.19093 * 18 17 16 46 46 H 0.97000 * 119.99792 * 264.99726 * 19 3 2 47 47 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1661 2.1452 0.2577 9 6 5.8846 4.4370 -0.0346 10 16 4.9045 5.8801 -0.2840 11 6 6.3134 6.8486 -0.2832 12 6 6.3284 8.3453 -0.4574 13 6 6.4493 8.6845 -1.9444 14 6 7.7065 9.4284 -2.3993 15 6 6.3638 10.1595 -2.3418 16 7 7.3652 6.1143 -0.1107 17 6 7.1828 4.8256 0.0323 18 6 8.3171 3.8570 0.2475 19 7 1.6524 2.0975 -1.2518 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0506 3.2991 -2.5530 23 7 -1.1362 3.8574 -2.6635 24 14 1.2435 3.3485 -3.9896 25 1 1.0358 2.1538 -4.8468 26 1 1.0063 4.5780 -4.7879 27 1 2.6369 3.3530 -3.4759 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8500 1.0377 1.0960 34 1 3.9955 0.8311 -0.6660 35 1 3.4411 3.5483 -0.1315 36 1 5.4036 8.7663 -0.0627 37 1 7.1777 8.7653 0.0813 38 1 6.0213 7.9530 -2.6298 39 1 8.4477 9.6759 -1.6393 40 1 8.1060 9.1863 -3.3842 41 1 5.8799 10.3984 -3.2888 42 1 6.2213 10.8883 -1.5438 43 1 8.6790 3.5011 -0.7170 44 1 9.1272 4.3582 0.7772 45 1 7.9654 3.0111 0.8383 46 1 2.2720 2.1232 -1.9978 47 1 -1.3915 4.2943 -3.4911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698617399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:58 Heat of formation + Delta-G solvation = 12.201483 kcal Electronic energy + Delta-G solvation = -26730.327750 eV Core-core repulsion = 23039.844504 eV Total energy + Delta-G solvation = -3690.483246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52579 -40.38788 -38.54481 -38.29419 -35.39908 -34.20705 -33.70753 -32.09383 -30.54149 -30.19978 -28.68498 -25.44148 -24.47229 -24.12958 -23.22460 -22.45287 -21.78605 -21.62129 -20.67429 -19.53466 -19.10059 -17.98253 -17.17753 -17.07522 -16.64084 -16.38700 -16.01547 -15.78736 -15.44141 -15.21213 -14.99890 -14.74360 -14.66805 -14.46946 -14.37003 -14.05660 -13.73823 -13.51581 -13.41822 -13.12853 -12.92509 -12.90157 -12.52183 -12.41105 -12.34806 -12.32277 -12.14190 -11.90618 -11.61372 -11.42085 -11.39758 -11.22263 -10.97435 -10.91853 -10.77394 -10.66042 -10.20131 -9.80964 -9.31078 -7.96379 -5.28311 -0.89282 0.06770 0.48297 1.27833 1.36536 1.39012 1.44584 1.99313 2.04973 2.49609 2.79253 2.90480 3.35665 3.54780 3.67139 3.70167 3.80033 3.84234 3.97465 4.02230 4.10653 4.29490 4.40625 4.42769 4.54611 4.55330 4.65840 4.68636 4.69817 4.74544 4.80698 4.81519 4.87574 5.04053 5.05381 5.07423 5.18646 5.22921 5.25598 5.27144 5.38272 5.51285 5.73288 5.86542 6.26077 6.30333 6.50618 6.96930 7.11763 7.86263 8.04521 9.24592 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003742 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.218478 B = 7480.128666 C = 9508.785768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.167 3.833 4 H 0.060 0.940 5 C 0.119 3.881 6 N -0.713 5.713 7 C 0.594 3.406 8 O -0.553 6.553 9 C -0.329 4.329 10 S 0.179 5.821 11 C 0.079 3.921 12 C -0.014 4.014 13 C -0.169 4.169 14 C -0.174 4.174 15 C -0.161 4.161 16 N -0.490 5.490 17 C 0.144 3.856 18 C -0.083 4.083 19 N -0.748 5.748 20 C -0.206 4.206 21 H 0.071 0.929 22 C -0.053 4.053 23 N -0.979 5.979 24 Si 0.932 3.068 25 H -0.289 1.289 26 H -0.300 1.300 27 H -0.258 1.258 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.405 0.595 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.362 0.638 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.702 7.779 6.251 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.059 3.941 4 H 0.078 0.922 5 C -0.004 4.004 6 N -0.364 5.364 7 C 0.380 3.620 8 O -0.434 6.434 9 C -0.453 4.453 10 S 0.438 5.562 11 C -0.197 4.197 12 C -0.055 4.055 13 C -0.189 4.189 14 C -0.211 4.211 15 C -0.198 4.198 16 N -0.205 5.205 17 C 0.005 3.995 18 C -0.142 4.142 19 N -0.392 5.392 20 C -0.337 4.337 21 H 0.089 0.911 22 C -0.245 4.245 23 N -0.630 5.630 24 Si 0.762 3.238 25 H -0.216 1.216 26 H -0.227 1.227 27 H -0.183 1.183 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.241 0.759 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.194 0.806 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.400 7.675 6.351 20.050 hybrid contribution 0.416 -0.262 -1.369 1.455 sum 17.816 7.413 4.981 19.929 Atomic orbital electron populations 1.21693 0.96303 1.00486 1.01634 1.21949 0.96171 0.96663 1.01901 1.20729 0.90961 0.93665 0.88773 0.92179 1.21755 0.94021 0.81827 1.02844 1.45963 1.06448 1.11341 1.72606 1.16820 0.82437 0.86233 0.76465 1.90728 1.56076 1.45088 1.51538 1.25464 0.98275 0.98623 1.22914 1.84338 1.11075 0.96564 1.64206 1.27868 0.90719 1.02667 0.98398 1.20110 1.06149 0.83181 0.96028 1.22133 1.05108 0.96701 0.94946 1.23122 0.91344 1.03447 1.03194 1.23103 0.99920 0.92902 1.03910 1.66157 1.31911 1.04291 1.18103 1.20961 0.93704 0.90588 0.94201 1.20626 0.93755 0.96221 1.03620 1.42850 1.15350 1.67766 1.13197 1.18967 0.91155 1.25024 0.98507 0.91070 1.25204 0.97754 1.01445 1.00073 1.69831 1.21628 1.44300 1.27290 0.85752 0.80335 0.76582 0.81108 1.21550 1.22705 1.18347 0.93882 0.93510 0.92717 0.92519 0.90037 0.89069 0.91547 0.75890 0.86847 0.86912 0.89237 0.87581 0.88980 0.88245 0.86801 0.89867 0.89255 0.89258 0.80553 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.18 71.98 0.66 -4.21 16 2 C -0.13 -3.79 5.61 30.59 0.17 -3.62 16 3 C 0.17 5.53 2.59 44.99 0.12 5.64 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 3.53 5.23 86.38 0.45 3.98 16 6 N -0.71 -22.47 5.38 -467.07 -2.51 -24.98 16 7 C 0.59 19.28 7.78 86.45 0.67 19.95 16 8 O -0.55 -19.50 14.27 -4.29 -0.06 -19.56 16 9 C -0.33 -9.77 6.48 23.88 0.15 -9.62 16 10 S 0.18 4.58 22.31 -56.49 -1.26 3.32 16 11 C 0.08 1.79 6.59 88.46 0.58 2.37 16 12 C -0.01 -0.22 6.07 29.85 0.18 -0.04 16 13 C -0.17 -2.76 5.72 -10.79 -0.06 -2.82 16 14 C -0.17 -2.42 10.18 30.59 0.31 -2.11 16 15 C -0.16 -2.00 10.25 30.59 0.31 -1.68 16 16 N -0.49 -12.81 10.50 -178.28 -1.87 -14.68 16 17 C 0.14 4.04 6.79 42.10 0.29 4.33 16 18 C -0.08 -2.02 9.69 71.24 0.69 -1.33 16 19 N -0.75 -31.09 4.31 -322.93 -1.39 -32.48 16 20 C -0.21 -10.48 8.23 84.04 0.69 -9.79 16 21 H 0.07 3.96 7.55 -2.91 -0.02 3.94 16 22 C -0.05 -2.93 5.50 84.86 0.47 -2.46 16 23 N -0.98 -59.58 13.97 21.65 0.30 -59.27 16 24 Si 0.93 43.98 27.74 68.60 1.90 45.88 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.26 -11.17 6.51 99.48 0.65 -10.52 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.98 5.99 -2.39 -0.01 1.96 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.41 13.20 7.32 -92.71 -0.68 12.52 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.49 7.87 -2.39 -0.02 1.48 16 38 H 0.09 1.78 8.07 -2.39 -0.02 1.76 16 39 H 0.11 1.29 8.03 -2.39 -0.02 1.27 16 40 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.09 2.38 6.02 -2.39 -0.01 2.37 16 46 H 0.36 15.21 5.66 -92.71 -0.52 14.68 16 47 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -65.30 395.73 0.52 -64.78 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.27 Total: 38.41 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.69 Total: -1.41 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.48 Total: -131.41 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.06 Total: -19.56 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.90 Total: 45.88 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.26 Total: 3.32 kcal Total: -65.30 0.52 -64.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698617399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.979 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds