Wall clock time and date at job start Tue Mar 31 2020 19:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 N 1.46493 * 109.47592 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00543 * 86.06863 * 4 3 2 6 6 O 1.21616 * 120.00229 * 175.24369 * 5 4 3 7 7 C 1.47258 * 119.99453 * 355.51477 * 5 4 3 8 8 N 1.30556 * 125.54422 * 353.93902 * 7 5 4 9 9 C 1.30705 * 115.90548 * 179.77384 * 8 7 5 10 10 C 1.50702 * 122.10679 * 180.21560 * 9 8 7 11 11 C 1.34234 * 115.78359 * 0.52091 * 9 8 7 12 12 C 1.50701 * 125.45388 * 179.71948 * 11 9 8 13 13 S 1.71067 * 109.09093 * 359.72231 * 11 9 8 14 14 C 1.46505 * 119.99944 * 266.06609 * 4 3 2 15 15 H 1.09001 * 110.63623 * 17.70886 * 14 4 3 16 16 C 1.55148 * 110.72304 * 254.37303 * 14 4 3 17 17 C 1.54912 * 101.58180 * 277.13688 * 16 14 4 18 18 N 1.47421 * 104.83161 * 322.99127 * 17 16 14 19 19 C 1.36938 * 125.64707 * 204.09561 * 18 17 16 20 20 H 1.07994 * 120.00154 * 180.02562 * 19 18 17 21 21 C 1.38816 * 120.00115 * 0.03336 * 19 18 17 22 22 N 1.31618 * 119.99822 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00082 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47289 * 90.00103 * 23 21 19 25 25 H 1.48497 * 109.47095 * 210.00454 * 23 21 19 26 26 H 1.48504 * 109.47096 * 330.00136 * 23 21 19 27 27 C 1.47021 * 108.70327 * 24.12630 * 18 17 16 28 28 H 1.08991 * 109.47379 * 300.00323 * 1 2 3 29 29 H 1.09006 * 109.46980 * 60.00419 * 1 2 3 30 30 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47532 * 239.99400 * 2 1 3 32 32 H 1.09006 * 109.46980 * 119.99581 * 2 1 3 33 33 H 1.08999 * 109.47271 * 59.99240 * 3 2 1 34 34 H 1.09006 * 109.46715 * 299.99742 * 3 2 1 35 35 H 1.09002 * 109.47481 * 270.32035 * 10 9 8 36 36 H 1.09004 * 109.46849 * 30.32470 * 10 9 8 37 37 H 1.08998 * 109.46828 * 150.31869 * 10 9 8 38 38 H 1.08998 * 109.47194 * 180.02562 * 12 11 9 39 39 H 1.08997 * 109.47186 * 300.02562 * 12 11 9 40 40 H 1.09001 * 109.47044 * 60.02559 * 12 11 9 41 41 H 1.09003 * 111.00783 * 35.20970 * 16 14 4 42 42 H 1.09005 * 111.00740 * 159.06487 * 16 14 4 43 43 H 1.08997 * 110.36760 * 204.14764 * 17 16 14 44 44 H 1.09001 * 110.46035 * 81.87660 * 17 16 14 45 45 H 0.96997 * 119.99662 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.88135 * 239.52545 * 27 18 17 47 47 H 1.09005 * 109.87956 * 118.36011 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1785 1.3627 -1.1653 6 8 5.3915 1.4497 -1.1736 7 6 3.4450 1.1760 -2.4286 8 7 2.1614 0.9635 -2.5366 9 6 1.7055 0.8288 -3.7541 10 6 0.2463 0.5839 -4.0404 11 6 2.6198 0.9159 -4.7330 12 6 2.3366 0.7876 -6.2076 13 16 4.1579 1.1957 -4.0387 14 6 4.2380 1.5294 1.2649 15 1 3.5889 1.2758 2.1030 16 6 4.8510 2.9428 1.4483 17 6 6.1568 2.8249 0.6232 18 7 6.6295 1.4486 0.8595 19 6 7.9243 1.0184 0.7429 20 1 8.1696 -0.0150 0.9381 21 6 8.9217 1.9108 0.3741 22 7 8.6228 3.1704 0.1369 23 14 10.6878 1.3238 0.2145 24 1 10.9321 0.8614 -1.1754 25 1 11.6117 2.4416 0.5339 26 1 10.9237 0.2016 1.1581 27 6 5.4804 0.6143 1.2401 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 0.0532 -0.4889 -4.0515 36 1 -0.3598 1.0543 -3.2661 37 1 -0.0099 1.0092 -5.0108 38 1 3.2652 0.9004 -6.7671 39 1 1.9067 -0.1931 -6.4111 40 1 1.6331 1.5628 -6.5113 41 1 4.1957 3.7096 1.0351 42 1 5.0686 3.1411 2.4978 43 1 6.8948 3.5453 0.9760 44 1 5.9533 2.9794 -0.4364 45 1 9.3198 3.7940 -0.1204 46 1 5.6448 0.1857 2.2288 47 1 5.3407 -0.1808 0.5076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713722164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:37 Heat of formation + Delta-G solvation = 75.179659 kcal Electronic energy + Delta-G solvation = -28754.316178 eV Core-core repulsion = 25066.563871 eV Total energy + Delta-G solvation = -3687.752307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47144 -39.37230 -36.26781 -35.69706 -33.24808 -32.78753 -31.47094 -29.94006 -28.95777 -27.43317 -26.49423 -25.50291 -24.61215 -24.22012 -21.72882 -21.06078 -19.95448 -19.52289 -18.11774 -17.83787 -16.73955 -16.47970 -15.58632 -15.34342 -15.06420 -14.60579 -14.37029 -14.27829 -13.68123 -13.61863 -13.30833 -13.16784 -13.10853 -12.99375 -12.84391 -12.60960 -12.30809 -12.08679 -11.87983 -11.80693 -11.51218 -11.38213 -11.26237 -11.02007 -10.79487 -10.72267 -10.61154 -10.48146 -10.06749 -9.95495 -9.65470 -9.56029 -9.36251 -9.27326 -9.09485 -8.57323 -8.37843 -7.85334 -6.46670 -5.39492 -2.74915 0.40173 1.28075 1.82538 2.47500 3.42615 3.52969 3.57401 3.58973 3.63349 4.14722 4.68999 4.73857 4.85285 4.92755 5.15514 5.22200 5.22860 5.31153 5.44605 5.47298 5.51043 5.54720 5.57603 5.61929 5.64800 5.72085 5.75821 5.85792 5.92657 5.97626 6.04928 6.10564 6.20536 6.32356 6.44148 6.57610 6.63040 6.69380 6.79518 6.88185 7.26821 7.58687 7.80440 7.85735 7.99755 8.12649 8.61547 8.79800 9.48572 10.10022 10.77353 11.63952 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.004311 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.781002 B = 6493.630542 C = 8030.981914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.117 3.883 4 N -0.587 5.587 5 C 0.552 3.448 6 O -0.434 6.434 7 C 0.003 3.997 8 N -0.420 5.420 9 C 0.043 3.957 10 C -0.075 4.075 11 C -0.265 4.265 12 C -0.070 4.070 13 S 0.239 5.761 14 C 0.137 3.863 15 H 0.085 0.915 16 C -0.160 4.160 17 C 0.157 3.843 18 N -0.576 5.576 19 C -0.201 4.201 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.919 5.919 23 Si 0.907 3.093 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.284 1.284 27 C 0.139 3.861 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.039 0.961 45 H 0.246 0.754 46 H 0.023 0.977 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.305 -3.674 -8.012 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C -0.007 4.007 4 N -0.323 5.323 5 C 0.334 3.666 6 O -0.302 6.302 7 C -0.273 4.273 8 N -0.139 5.139 9 C -0.094 4.094 10 C -0.134 4.134 11 C -0.388 4.388 12 C -0.129 4.129 13 S 0.497 5.503 14 C 0.033 3.967 15 H 0.103 0.897 16 C -0.199 4.199 17 C 0.033 3.967 18 N -0.301 5.301 19 C -0.331 4.331 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.569 5.569 23 Si 0.739 3.261 24 H -0.220 1.220 25 H -0.219 1.219 26 H -0.210 1.210 27 C 0.012 3.988 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.040 0.960 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -18.603 -3.426 -7.943 20.516 hybrid contribution -0.201 -0.591 -0.372 0.726 sum -18.805 -4.017 -8.315 20.949 Atomic orbital electron populations 1.21609 0.95840 1.01017 1.01370 1.21811 0.95455 0.97566 1.01926 1.21749 0.79010 0.97137 1.02770 1.47581 1.06348 1.73300 1.05031 1.16931 0.87011 0.81133 0.81488 1.91300 1.10672 1.43461 1.84784 1.27982 0.92497 1.08027 0.98758 1.67077 1.10613 1.13137 1.23043 1.20149 0.98360 1.04225 0.86692 1.20323 0.88809 1.02172 1.02079 1.25495 0.98692 1.12188 1.02395 1.20181 1.02500 1.02794 0.87454 1.84295 1.06063 1.61216 0.98774 1.22149 0.93194 0.97849 0.83503 0.89655 1.23552 1.00565 0.94516 1.01316 1.22119 0.90570 0.88009 0.96044 1.44203 1.01747 1.05119 1.79017 1.18990 0.82215 0.94138 1.37722 0.91138 1.24663 0.97637 0.95892 1.02652 1.69834 1.30550 1.02439 1.54079 0.86163 0.85149 0.77152 0.77628 1.22007 1.21945 1.20991 1.21387 0.87332 0.93347 0.96770 0.93315 0.92555 0.93322 0.91205 0.92915 0.91691 0.88825 0.91026 0.90797 0.91156 0.91290 0.90484 0.90435 0.92520 0.91586 0.88793 0.94365 0.94266 0.95970 0.96246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.91 37.15 0.37 -0.99 16 2 C -0.13 -1.59 5.67 -26.73 -0.15 -1.74 16 3 C 0.12 1.58 4.94 -4.05 -0.02 1.56 16 4 N -0.59 -10.17 2.52 -165.35 -0.42 -10.58 16 5 C 0.55 10.92 6.76 -12.59 -0.09 10.84 16 6 O -0.43 -10.63 10.30 5.26 0.05 -10.58 16 7 C 0.00 0.04 7.01 -14.43 -0.10 -0.06 16 8 N -0.42 -5.93 5.33 -7.69 -0.04 -5.97 16 9 C 0.04 0.52 6.68 -84.48 -0.56 -0.05 16 10 C -0.07 -0.62 10.02 36.01 0.36 -0.26 16 11 C -0.26 -3.08 6.36 -35.72 -0.23 -3.31 16 12 C -0.07 -0.56 9.45 36.01 0.34 -0.21 16 13 S 0.24 3.53 23.00 -107.50 -2.47 1.06 16 14 C 0.14 2.52 3.64 -66.10 -0.24 2.28 16 15 H 0.09 1.31 8.02 -51.93 -0.42 0.89 16 16 C -0.16 -3.22 6.72 -24.59 -0.17 -3.38 16 17 C 0.16 4.08 4.92 -2.53 -0.01 4.07 16 18 N -0.58 -15.64 2.25 -170.07 -0.38 -16.02 16 19 C -0.20 -5.97 10.27 -15.06 -0.15 -6.13 16 20 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 22 N -0.92 -28.31 10.09 55.49 0.56 -27.75 16 23 Si 0.91 23.37 29.55 -169.99 -5.02 18.34 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 26 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.14 3.13 6.00 -3.07 -0.02 3.11 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.99 6.49 -51.93 -0.34 0.66 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.78 8.03 -51.93 -0.42 0.36 16 34 H 0.09 1.30 5.74 -51.93 -0.30 1.00 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.46 7.33 -51.93 -0.38 0.08 16 38 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.50 7.93 -51.93 -0.41 0.09 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 2.75 5.87 -51.93 -0.30 2.45 16 44 H 0.04 1.10 5.46 -52.04 -0.28 0.82 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.02 0.47 7.15 -51.93 -0.37 0.10 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -33.89 375.92 -10.24 -44.13 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -7.42 Total: -3.50 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.77 Total: 5.21 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.28 Total: -60.32 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.05 Total: -10.58 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.34 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.47 Total: 1.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.89 -10.24 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713722164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.309 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds