Wall clock time and date at job start Tue Mar 31 2020 19:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 N 1.46493 * 109.47592 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00543 * 86.06863 * 4 3 2 6 6 O 1.21616 * 120.00229 * 175.24369 * 5 4 3 7 7 C 1.47258 * 119.99453 * 355.51477 * 5 4 3 8 8 N 1.30556 * 125.54422 * 353.93902 * 7 5 4 9 9 C 1.30705 * 115.90548 * 179.77384 * 8 7 5 10 10 C 1.50702 * 122.10679 * 180.21560 * 9 8 7 11 11 C 1.34234 * 115.78359 * 0.52091 * 9 8 7 12 12 C 1.50701 * 125.45388 * 179.71948 * 11 9 8 13 13 S 1.71067 * 109.09093 * 359.72231 * 11 9 8 14 14 C 1.46505 * 119.99944 * 266.06609 * 4 3 2 15 15 H 1.09001 * 110.63623 * 17.70886 * 14 4 3 16 16 C 1.55148 * 110.72304 * 254.37303 * 14 4 3 17 17 C 1.54912 * 101.58180 * 277.13688 * 16 14 4 18 18 N 1.47421 * 104.83161 * 322.99127 * 17 16 14 19 19 C 1.36938 * 125.64707 * 204.09561 * 18 17 16 20 20 H 1.07994 * 120.00154 * 180.02562 * 19 18 17 21 21 C 1.38816 * 120.00115 * 0.03336 * 19 18 17 22 22 N 1.31618 * 119.99822 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00082 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47289 * 90.00103 * 23 21 19 25 25 H 1.48497 * 109.47095 * 210.00454 * 23 21 19 26 26 H 1.48504 * 109.47096 * 330.00136 * 23 21 19 27 27 C 1.47021 * 108.70327 * 24.12630 * 18 17 16 28 28 H 1.08991 * 109.47379 * 300.00323 * 1 2 3 29 29 H 1.09006 * 109.46980 * 60.00419 * 1 2 3 30 30 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47532 * 239.99400 * 2 1 3 32 32 H 1.09006 * 109.46980 * 119.99581 * 2 1 3 33 33 H 1.08999 * 109.47271 * 59.99240 * 3 2 1 34 34 H 1.09006 * 109.46715 * 299.99742 * 3 2 1 35 35 H 1.09002 * 109.47481 * 270.32035 * 10 9 8 36 36 H 1.09004 * 109.46849 * 30.32470 * 10 9 8 37 37 H 1.08998 * 109.46828 * 150.31869 * 10 9 8 38 38 H 1.08998 * 109.47194 * 180.02562 * 12 11 9 39 39 H 1.08997 * 109.47186 * 300.02562 * 12 11 9 40 40 H 1.09001 * 109.47044 * 60.02559 * 12 11 9 41 41 H 1.09003 * 111.00783 * 35.20970 * 16 14 4 42 42 H 1.09005 * 111.00740 * 159.06487 * 16 14 4 43 43 H 1.08997 * 110.36760 * 204.14764 * 17 16 14 44 44 H 1.09001 * 110.46035 * 81.87660 * 17 16 14 45 45 H 0.96997 * 119.99662 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.88135 * 239.52545 * 27 18 17 47 47 H 1.09005 * 109.87956 * 118.36011 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1785 1.3627 -1.1653 6 8 5.3915 1.4497 -1.1736 7 6 3.4450 1.1760 -2.4286 8 7 2.1614 0.9635 -2.5366 9 6 1.7055 0.8288 -3.7541 10 6 0.2463 0.5839 -4.0404 11 6 2.6198 0.9159 -4.7330 12 6 2.3366 0.7876 -6.2076 13 16 4.1579 1.1957 -4.0387 14 6 4.2380 1.5294 1.2649 15 1 3.5889 1.2758 2.1030 16 6 4.8510 2.9428 1.4483 17 6 6.1568 2.8249 0.6232 18 7 6.6295 1.4486 0.8595 19 6 7.9243 1.0184 0.7429 20 1 8.1696 -0.0150 0.9381 21 6 8.9217 1.9108 0.3741 22 7 8.6228 3.1704 0.1369 23 14 10.6878 1.3238 0.2145 24 1 10.9321 0.8614 -1.1754 25 1 11.6117 2.4416 0.5339 26 1 10.9237 0.2016 1.1581 27 6 5.4804 0.6143 1.2401 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 0.0532 -0.4889 -4.0515 36 1 -0.3598 1.0543 -3.2661 37 1 -0.0099 1.0092 -5.0108 38 1 3.2652 0.9004 -6.7671 39 1 1.9067 -0.1931 -6.4111 40 1 1.6331 1.5628 -6.5113 41 1 4.1957 3.7096 1.0351 42 1 5.0686 3.1411 2.4978 43 1 6.8948 3.5453 0.9760 44 1 5.9533 2.9794 -0.4364 45 1 9.3198 3.7940 -0.1204 46 1 5.6448 0.1857 2.2288 47 1 5.3407 -0.1808 0.5076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713722164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:36 Heat of formation + Delta-G solvation = 55.258628 kcal Electronic energy + Delta-G solvation = -28755.180018 eV Core-core repulsion = 25066.563871 eV Total energy + Delta-G solvation = -3688.616148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78015 -40.64242 -38.00000 -37.05801 -34.61565 -34.05284 -33.05346 -31.00508 -30.59521 -29.13178 -27.63091 -26.67714 -26.23148 -25.56513 -22.97838 -22.32768 -21.87292 -20.75981 -19.39152 -19.03858 -18.69821 -17.90226 -16.95976 -16.82622 -16.51930 -16.15613 -15.74129 -15.58412 -15.45130 -14.79175 -14.46313 -14.19001 -14.07979 -13.93383 -13.82793 -13.71158 -13.63433 -13.42780 -13.15577 -12.95440 -12.93744 -12.82734 -12.79525 -12.63263 -12.34123 -12.00263 -11.98895 -11.95369 -11.82923 -11.62636 -11.44422 -11.35221 -11.00663 -10.63361 -10.44819 -10.33290 -9.58518 -9.40087 -8.61582 -7.63272 -5.01806 -0.73334 0.14608 0.76465 1.39028 1.42937 1.46774 1.54384 2.09307 2.25614 2.55571 3.02670 3.43187 3.76920 3.89121 3.92901 3.94085 4.06416 4.14641 4.18932 4.32420 4.35178 4.59085 4.63039 4.65887 4.70051 4.74031 4.79857 4.86954 4.90143 4.93696 4.96682 5.00472 5.04574 5.05768 5.12002 5.16416 5.30952 5.41034 5.48208 5.51121 5.61862 5.82439 5.91452 6.02001 6.41471 6.46429 6.55652 7.23963 7.33752 7.95970 8.61256 9.38019 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.004311 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.781002 B = 6493.630542 C = 8030.981914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.115 3.885 4 N -0.583 5.583 5 C 0.551 3.449 6 O -0.498 6.498 7 C -0.038 4.038 8 N -0.399 5.399 9 C 0.025 3.975 10 C -0.070 4.070 11 C -0.231 4.231 12 C -0.074 4.074 13 S 0.195 5.805 14 C 0.149 3.851 15 H 0.132 0.868 16 C -0.144 4.144 17 C 0.164 3.836 18 N -0.594 5.594 19 C -0.219 4.219 20 H 0.068 0.932 21 C -0.070 4.070 22 N -0.946 5.946 23 Si 0.972 3.028 24 H -0.295 1.295 25 H -0.291 1.291 26 H -0.269 1.269 27 C 0.137 3.863 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.007 0.993 45 H 0.239 0.761 46 H 0.033 0.967 47 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.054 -4.592 -8.521 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C -0.006 4.006 4 N -0.317 5.317 5 C 0.335 3.665 6 O -0.371 6.371 7 C -0.311 4.311 8 N -0.118 5.118 9 C -0.112 4.112 10 C -0.129 4.129 11 C -0.354 4.354 12 C -0.133 4.133 13 S 0.451 5.549 14 C 0.045 3.955 15 H 0.150 0.850 16 C -0.184 4.184 17 C 0.039 3.961 18 N -0.319 5.319 19 C -0.349 4.349 20 H 0.086 0.914 21 C -0.262 4.262 22 N -0.598 5.598 23 Si 0.802 3.198 24 H -0.223 1.223 25 H -0.218 1.218 26 H -0.194 1.194 27 C 0.011 3.989 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.024 0.976 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -22.433 -4.367 -8.418 24.355 hybrid contribution 0.786 -0.382 -0.398 0.960 sum -21.647 -4.749 -8.816 23.850 Atomic orbital electron populations 1.21550 0.93340 1.01841 1.02319 1.21720 0.97462 0.96197 1.00679 1.21996 0.76376 0.98322 1.03931 1.47737 1.07924 1.72008 1.04038 1.17363 0.86631 0.79540 0.82937 1.91273 1.13262 1.46665 1.85900 1.27384 0.93418 1.12314 0.98021 1.67068 1.09187 1.11212 1.24377 1.20827 1.00366 1.04177 0.85850 1.20461 0.85659 1.03233 1.03589 1.26028 0.96214 1.08777 1.04369 1.20441 1.03556 1.04890 0.84382 1.84457 1.09201 1.62073 0.99199 1.22103 0.92512 0.95364 0.85500 0.84994 1.23359 0.97786 0.96261 1.00967 1.21781 0.92291 0.86819 0.95222 1.44395 1.02106 1.06297 1.79061 1.19319 0.83979 0.94126 1.37470 0.91429 1.25471 1.01573 0.96138 1.03035 1.70129 1.31125 1.03346 1.55163 0.85151 0.80312 0.76983 0.77387 1.22296 1.21768 1.19435 1.21508 0.87975 0.93301 0.96145 0.91888 0.92073 0.92593 0.93460 0.93226 0.89089 0.89018 0.89833 0.90292 0.88686 0.90922 0.88151 0.87904 0.90830 0.90199 0.92856 0.97570 0.95077 0.94885 0.98322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.12 -2.73 5.67 30.59 0.17 -2.56 16 3 C 0.12 2.85 4.94 86.38 0.43 3.28 16 4 N -0.58 -19.93 2.52 -795.30 -2.00 -21.94 16 5 C 0.55 22.70 6.76 86.61 0.59 23.29 16 6 O -0.50 -26.14 10.30 -4.08 -0.04 -26.18 16 7 C -0.04 -1.30 7.01 87.26 0.61 -0.69 16 8 N -0.40 -10.84 5.33 -178.24 -0.95 -11.79 16 9 C 0.02 0.54 6.68 41.81 0.28 0.81 16 10 C -0.07 -0.88 10.02 71.24 0.71 -0.17 16 11 C -0.23 -4.93 6.36 24.77 0.16 -4.77 16 12 C -0.07 -0.90 9.45 71.24 0.67 -0.23 16 13 S 0.19 5.94 23.00 -56.49 -1.30 4.64 16 14 C 0.15 5.34 3.64 46.18 0.17 5.50 16 15 H 0.13 3.56 8.02 -2.39 -0.02 3.54 16 16 C -0.14 -5.77 6.72 31.98 0.22 -5.55 16 17 C 0.16 8.95 4.92 86.86 0.43 9.38 16 18 N -0.59 -33.74 2.25 -691.99 -1.56 -35.30 16 19 C -0.22 -13.59 10.27 84.03 0.86 -12.72 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.07 -4.37 5.49 84.86 0.47 -3.91 16 22 N -0.95 -61.58 10.09 21.65 0.22 -61.36 16 23 Si 0.97 49.96 29.55 68.60 2.03 51.99 16 24 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 25 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 26 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 27 C 0.14 6.31 6.00 86.73 0.52 6.83 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 1.28 6.49 -2.39 -0.02 1.27 16 32 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.09 1.82 8.03 -2.39 -0.02 1.80 16 34 H 0.09 2.35 5.74 -2.38 -0.01 2.34 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.09 0.74 7.33 -2.39 -0.02 0.73 16 38 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.85 7.93 -2.39 -0.02 0.83 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 43 H 0.05 3.33 5.87 -2.39 -0.01 3.31 16 44 H 0.01 0.42 5.46 -4.23 -0.02 0.39 16 45 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.00 -0.06 7.15 -2.38 -0.02 -0.07 16 Total: -1.00 -81.24 375.92 4.34 -76.90 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.96 Total: 5.93 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 6.99 Total: 17.11 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -4.30 Total: -130.38 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.04 Total: -26.18 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.03 Total: 51.99 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -1.30 Total: 4.64 kcal Total: -81.24 4.34 -76.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713722164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.157 kcal (2) G-P(sol) polarization free energy of solvation -81.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds