Wall clock time and date at job start Tue Mar 31 2020 19:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47025 * 2 1 4 4 N 1.46492 * 109.47439 * 180.02562 * 3 2 1 5 5 C 1.34774 * 119.99893 * 272.90911 * 4 3 2 6 6 O 1.21619 * 120.00266 * 185.24205 * 5 4 3 7 7 C 1.47256 * 120.00166 * 5.24878 * 5 4 3 8 8 N 1.30559 * 125.54082 * 5.84670 * 7 5 4 9 9 C 1.30710 * 115.90599 * 179.78355 * 8 7 5 10 10 C 1.50698 * 122.10733 * 180.21798 * 9 8 7 11 11 C 1.34234 * 115.78180 * 0.51980 * 9 8 7 12 12 C 1.50694 * 125.45075 * 179.72180 * 11 9 8 13 13 S 1.71071 * 109.09196 * 359.72208 * 11 9 8 14 14 C 1.46496 * 120.00202 * 92.90448 * 4 3 2 15 15 H 1.08999 * 110.88532 * 359.30180 * 14 4 3 16 16 C 1.55164 * 111.00432 * 123.18408 * 14 4 3 17 17 C 1.54327 * 102.93914 * 153.61645 * 16 14 4 18 18 N 1.47022 * 107.27439 * 337.80350 * 17 16 14 19 19 C 1.36937 * 125.64682 * 178.97929 * 18 17 16 20 20 H 1.07997 * 119.99582 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00108 * 359.97438 * 19 18 17 22 22 N 1.31616 * 120.00093 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47286 * 60.00006 * 23 21 19 25 25 H 1.48502 * 109.47341 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47349 * 299.99993 * 23 21 19 27 27 C 1.47524 * 108.71443 * 358.94757 * 18 17 16 28 28 H 1.08998 * 109.47198 * 300.00193 * 1 2 3 29 29 H 1.08996 * 109.47334 * 59.99830 * 1 2 3 30 30 H 1.08999 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46896 * 240.00516 * 2 1 3 32 32 H 1.08996 * 109.47334 * 120.00170 * 2 1 3 33 33 H 1.09004 * 109.47009 * 59.99575 * 3 2 1 34 34 H 1.09004 * 109.46917 * 300.00187 * 3 2 1 35 35 H 1.08991 * 109.47428 * 270.31851 * 10 9 8 36 36 H 1.09004 * 109.47130 * 30.32330 * 10 9 8 37 37 H 1.08999 * 109.46845 * 150.31578 * 10 9 8 38 38 H 1.09008 * 109.47074 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.47558 * 300.02451 * 12 11 9 40 40 H 1.09000 * 109.47289 * 60.03055 * 12 11 9 41 41 H 1.09003 * 110.71713 * 271.97795 * 16 14 4 42 42 H 1.08993 * 110.71709 * 35.25102 * 16 14 4 43 43 H 1.09003 * 109.87862 * 97.22711 * 17 16 14 44 44 H 1.09003 * 109.87630 * 218.23149 * 17 16 14 45 45 H 0.97003 * 120.00440 * 180.02562 * 22 21 19 46 46 H 1.09005 * 110.37095 * 265.30433 * 27 18 17 47 47 H 1.09002 * 110.41362 * 142.94904 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1793 1.3833 1.1648 6 8 5.3917 1.4793 1.1714 7 6 3.4482 1.2019 2.4301 8 7 2.1665 0.9797 2.5409 9 6 1.7138 0.8431 3.7595 10 6 0.2587 0.5779 4.0483 11 6 2.6256 0.9603 4.7376 12 6 2.3433 0.8483 6.2136 13 16 4.1592 1.2572 4.0402 14 6 4.2369 1.5071 -1.2680 15 1 3.5490 1.5377 -2.1129 16 6 5.2015 2.7223 -1.2918 17 6 6.3005 2.2718 -2.2773 18 7 6.2695 0.8027 -2.3240 19 6 7.0766 0.0116 -3.0972 20 1 6.9754 -1.0630 -3.0596 21 6 8.0247 0.5908 -3.9294 22 7 8.1475 1.9004 -3.9756 23 14 9.1261 -0.4884 -4.9836 24 1 8.2896 -1.3005 -5.9035 25 1 10.0451 0.3672 -5.7764 26 1 9.9189 -1.3900 -4.1096 27 6 5.2254 0.3216 -1.3993 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 -0.2680 1.5255 4.1608 36 1 -0.1786 0.0147 3.2239 37 1 0.1704 0.0015 4.9692 38 1 3.2693 0.9863 6.7721 39 1 1.6254 1.6148 6.5055 40 1 1.9314 -0.1371 6.4310 41 1 4.6921 3.6118 -1.6626 42 1 5.6209 2.9012 -0.3019 43 1 6.0991 2.6786 -3.2683 44 1 7.2747 2.6134 -1.9274 45 1 8.8098 2.3052 -4.5574 46 1 5.6597 0.0805 -0.4290 47 1 4.7199 -0.5493 -1.8166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713722165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:40 Heat of formation + Delta-G solvation = 48.055620 kcal Electronic energy + Delta-G solvation = -27990.643921 eV Core-core repulsion = 24301.715428 eV Total energy + Delta-G solvation = -3688.928493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68241 -39.49456 -36.76851 -35.82979 -33.50366 -32.90283 -31.68739 -30.13938 -29.06103 -27.62209 -26.64230 -25.67051 -24.88061 -24.08374 -21.93563 -21.03857 -20.06516 -19.96188 -18.40784 -18.14528 -16.90383 -16.72721 -15.69826 -15.47456 -15.08853 -14.62845 -14.48637 -14.43685 -13.97626 -13.73824 -13.45680 -13.32955 -13.27555 -13.19227 -12.95924 -12.63595 -12.46523 -12.26657 -12.17203 -11.97989 -11.72473 -11.61317 -11.30612 -11.26096 -10.83807 -10.79951 -10.61121 -10.57273 -10.42271 -10.05813 -10.00788 -9.72596 -9.56989 -9.50183 -9.24264 -8.81114 -8.50301 -8.26287 -6.68428 -5.59624 -2.92372 0.12917 1.00555 1.54861 2.21004 3.14108 3.26234 3.47822 3.51531 3.53178 3.89079 4.53279 4.59770 4.64563 4.69880 5.06073 5.06543 5.13383 5.16059 5.31596 5.35963 5.42103 5.45894 5.48598 5.49797 5.53968 5.59181 5.69519 5.80052 5.85266 5.88142 5.95093 5.99553 6.09004 6.20681 6.37397 6.48722 6.57148 6.65973 6.71384 6.81114 7.23192 7.34775 7.57845 7.67654 7.79384 7.94818 8.27645 8.37942 9.33476 9.93655 10.60878 11.51974 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.018398 B = 0.003087 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.536730 B = 9067.821361 C = 9840.658901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.111 3.889 4 N -0.577 5.577 5 C 0.588 3.412 6 O -0.506 6.506 7 C -0.009 4.009 8 N -0.411 5.411 9 C 0.044 3.956 10 C -0.077 4.077 11 C -0.254 4.254 12 C -0.073 4.073 13 S 0.239 5.761 14 C 0.131 3.869 15 H 0.096 0.904 16 C -0.158 4.158 17 C 0.186 3.814 18 N -0.601 5.601 19 C -0.224 4.224 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.130 3.870 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.252 0.748 46 H 0.038 0.962 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.127 -0.155 19.400 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C -0.012 4.012 4 N -0.308 5.308 5 C 0.371 3.629 6 O -0.380 6.380 7 C -0.284 4.284 8 N -0.129 5.129 9 C -0.093 4.093 10 C -0.137 4.137 11 C -0.377 4.377 12 C -0.132 4.132 13 S 0.496 5.504 14 C 0.028 3.972 15 H 0.114 0.886 16 C -0.197 4.197 17 C 0.061 3.939 18 N -0.328 5.328 19 C -0.352 4.352 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.003 3.997 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.521 0.087 19.095 25.916 hybrid contribution -0.398 -0.751 -0.463 0.968 sum -17.920 -0.663 18.632 25.859 Atomic orbital electron populations 1.21617 0.95595 1.01235 1.01466 1.21808 0.95704 0.97130 1.02248 1.21904 0.78358 0.97721 1.03206 1.47743 1.07099 1.70719 1.05284 1.16781 0.86191 0.78368 0.81510 1.90913 1.12232 1.49114 1.85782 1.27732 0.92765 1.09398 0.98501 1.67064 1.10457 1.12198 1.23213 1.20193 0.98643 1.04010 0.86462 1.20364 0.88554 1.02277 1.02465 1.25545 0.98478 1.11125 1.02560 1.20227 1.02695 1.03121 0.87129 1.84114 1.06807 1.61060 0.98380 1.22529 0.93434 0.98633 0.82649 0.88613 1.23320 0.97988 0.95826 1.02551 1.21049 0.94334 0.83475 0.95068 1.44336 1.38946 1.02141 1.47372 1.19000 1.10983 0.89426 1.15807 0.90622 1.24782 0.99588 0.95922 1.00256 1.69962 1.37272 1.07930 1.41872 0.86200 0.80337 0.79135 0.80086 1.21269 1.21649 1.21242 1.21818 0.89601 0.93517 0.94813 0.92560 0.93118 0.93113 0.92393 0.91229 0.88578 0.91101 0.90823 0.90498 0.90970 0.91156 0.90202 0.90178 0.92617 0.90145 0.93770 0.93894 0.93812 0.94435 0.94789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.55 5.70 -26.73 -0.15 -1.70 16 3 C 0.11 1.41 4.94 -4.05 -0.02 1.39 16 4 N -0.58 -9.38 2.57 -164.99 -0.42 -9.81 16 5 C 0.59 10.21 6.91 -12.60 -0.09 10.13 16 6 O -0.51 -10.58 13.00 5.26 0.07 -10.51 16 7 C -0.01 -0.13 7.03 -14.43 -0.10 -0.23 16 8 N -0.41 -5.01 5.37 -7.69 -0.04 -5.05 16 9 C 0.04 0.44 6.68 -84.48 -0.56 -0.12 16 10 C -0.08 -0.52 10.02 36.00 0.36 -0.16 16 11 C -0.25 -2.36 6.36 -35.72 -0.23 -2.59 16 12 C -0.07 -0.42 9.45 36.00 0.34 -0.08 16 13 S 0.24 2.78 23.00 -107.50 -2.47 0.31 16 14 C 0.13 2.50 3.54 -65.78 -0.23 2.27 16 15 H 0.10 1.70 7.85 -51.93 -0.41 1.30 16 16 C -0.16 -3.31 6.30 -24.89 -0.16 -3.47 16 17 C 0.19 4.85 5.37 -3.06 -0.02 4.84 16 18 N -0.60 -16.47 3.40 -169.98 -0.58 -17.05 16 19 C -0.22 -6.58 10.28 -15.06 -0.15 -6.73 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -28.20 10.31 55.49 0.57 -27.63 16 23 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.13 2.98 6.62 -2.47 -0.02 2.96 16 28 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 33 H 0.10 1.19 5.72 -51.93 -0.30 0.89 16 34 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 37 H 0.07 0.36 7.33 -51.93 -0.38 -0.02 16 38 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.37 7.93 -51.93 -0.41 -0.04 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.77 5.79 -51.93 -0.30 1.47 16 43 H 0.04 1.24 7.38 -51.93 -0.38 0.85 16 44 H 0.04 1.26 7.51 -51.93 -0.39 0.87 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.04 0.93 5.99 -51.93 -0.31 0.62 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -33.71 380.58 -10.32 -44.03 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.40 Total: -3.15 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.76 Total: 5.18 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.47 Total: -59.54 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.47 Total: 0.31 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.71 -10.32 -44.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713722165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.090 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds