Wall clock time and date at job start Tue Mar 31 2020 19:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47220 * 2 1 4 4 H 1.08999 * 109.47232 * 305.00021 * 3 2 1 5 5 C 1.53000 * 109.47021 * 184.99922 * 3 2 1 6 6 N 1.46498 * 109.47151 * 185.00135 * 5 3 2 7 7 C 1.34779 * 120.00089 * 179.97438 * 6 5 3 8 8 O 1.21569 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.47701 * 120.00164 * 179.97438 * 7 6 5 10 10 C 1.39602 * 120.13104 * 359.72372 * 9 7 6 11 11 C 1.38490 * 119.80201 * 179.79235 * 10 9 7 12 12 N 1.40059 * 119.96102 * 180.20916 * 11 10 9 13 13 C 1.34777 * 119.99544 * 213.62334 * 12 11 10 14 14 C 1.50700 * 119.99567 * 185.27523 * 13 12 11 15 15 O 1.21287 * 120.00459 * 5.28100 * 13 12 11 16 16 C 1.39036 * 120.07308 * 0.46334 * 11 10 9 17 17 C 1.38115 * 120.27330 * 359.79016 * 16 11 10 18 18 C 1.38329 * 120.19455 * 359.97438 * 17 16 11 19 19 F 1.35099 * 120.04098 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.47001 * 65.00156 * 3 2 1 21 21 C 1.36941 * 119.99898 * 274.99609 * 20 3 2 22 22 H 1.08000 * 119.99904 * 359.97438 * 21 20 3 23 23 C 1.38811 * 119.99836 * 180.02562 * 21 20 3 24 24 N 1.31616 * 120.00101 * 359.72049 * 23 21 20 25 25 Si 1.86806 * 119.99945 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47320 * 179.72226 * 25 23 21 27 27 H 1.48502 * 109.46666 * 299.72243 * 25 23 21 28 28 H 1.48498 * 109.46965 * 59.71583 * 25 23 21 29 29 H 1.09002 * 109.47131 * 300.00304 * 1 2 3 30 30 H 1.09005 * 109.46609 * 59.99874 * 1 2 3 31 31 H 1.08992 * 109.47372 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46742 * 239.99858 * 2 1 3 33 33 H 1.08999 * 109.46559 * 120.00550 * 2 1 3 34 34 H 1.08999 * 109.47176 * 304.99991 * 5 3 2 35 35 H 1.09000 * 109.47203 * 64.99929 * 5 3 2 36 36 H 0.96998 * 120.00099 * 0.02562 * 6 5 3 37 37 H 1.07999 * 120.09899 * 359.97438 * 10 9 7 38 38 H 0.96997 * 119.99713 * 33.62890 * 12 11 10 39 39 H 1.08998 * 109.46959 * 60.00072 * 14 13 12 40 40 H 1.09002 * 109.47295 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.47200 * 300.00029 * 14 13 12 42 42 H 1.07997 * 119.86701 * 179.76887 * 16 11 10 43 43 H 1.07997 * 119.90335 * 179.97438 * 17 16 11 44 44 H 0.97002 * 120.00352 * 94.99831 * 20 3 2 45 45 H 0.96998 * 120.00179 * 0.28379 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 4.0631 2.8166 -0.0059 7 6 5.3859 3.0628 -0.0857 8 8 6.1656 2.1458 -0.2567 9 6 5.8882 4.4465 0.0345 10 6 4.9949 5.5022 0.2251 11 6 5.4737 6.7965 0.3412 12 7 4.5808 7.8577 0.5369 13 6 4.8463 9.0681 0.0069 14 6 3.9489 10.2389 0.3153 15 8 5.8073 9.2152 -0.7183 16 6 6.8393 7.0443 0.2585 17 6 7.7254 6.0027 0.0647 18 6 7.2598 4.7050 -0.0479 19 9 8.1293 3.6886 -0.2379 20 7 1.6525 2.0974 1.2518 21 6 0.4157 2.6735 1.3688 22 1 -0.2739 2.6453 0.5381 23 6 0.0487 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6387 4.0797 2.7146 26 1 -1.7857 4.6654 4.0712 27 1 -1.7854 5.1494 1.6950 28 1 -2.6864 3.0486 2.5044 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9954 0.8310 0.6659 35 1 3.8499 1.0376 -1.0960 36 1 3.4412 3.5482 0.1316 37 1 3.9339 5.3099 0.2847 38 1 3.7714 7.7214 1.0539 39 1 3.9418 10.4179 1.3905 40 1 4.3192 11.1259 -0.1987 41 1 2.9362 10.0195 -0.0232 42 1 7.2087 8.0553 0.3458 43 1 8.7849 6.2020 0.0010 44 1 2.2720 2.1230 1.9978 45 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714124766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:34 Heat of formation + Delta-G solvation = -83.138213 kcal Electronic energy + Delta-G solvation = -29192.952363 eV Core-core repulsion = 24932.121702 eV Total energy + Delta-G solvation = -4260.830661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.78935 -40.80645 -39.64931 -38.12950 -36.84513 -34.88227 -33.98258 -32.73891 -31.58860 -30.96076 -29.63749 -28.50845 -27.77861 -24.63811 -23.55987 -22.89503 -22.44494 -21.22364 -20.37481 -19.87529 -18.39034 -17.60290 -17.53908 -17.46356 -16.42454 -16.26846 -15.74814 -15.59441 -15.19452 -15.08832 -14.73850 -14.42157 -14.20229 -14.15935 -13.71552 -13.50436 -13.32565 -13.23667 -13.16729 -12.91127 -12.80701 -12.69830 -12.35751 -12.05855 -11.71039 -11.59672 -11.07115 -10.88863 -10.63658 -10.53854 -10.41853 -10.27707 -10.19009 -9.96091 -9.72599 -9.33812 -9.29909 -9.04796 -8.77468 -8.26202 -7.19294 -6.21089 -3.23012 0.59933 0.88700 2.20458 2.71560 2.90882 3.32119 3.40270 3.44270 3.61252 3.64300 4.12219 4.34146 4.53171 4.53835 4.59110 4.88864 4.97825 5.03048 5.03882 5.18857 5.25973 5.31039 5.45554 5.49504 5.53461 5.76876 5.81203 5.84348 5.85559 5.89733 5.95180 6.05095 6.11844 6.26249 6.41965 6.45905 6.50534 6.63801 6.74142 6.89677 7.04697 7.15648 7.69701 7.73640 7.76351 8.38072 8.62471 9.07436 9.94303 10.09856 11.25626 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008528 B = 0.003968 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.647729 B = 7054.394995 C = 9714.458905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.706 5.706 7 C 0.554 3.446 8 O -0.534 6.534 9 C -0.148 4.148 10 C -0.079 4.079 11 C 0.129 3.871 12 N -0.672 5.672 13 C 0.512 3.488 14 C -0.174 4.174 15 O -0.530 6.530 16 C -0.069 4.069 17 C -0.147 4.147 18 C 0.143 3.857 19 F -0.116 7.116 20 N -0.733 5.733 21 C -0.328 4.328 22 H 0.067 0.933 23 C -0.042 4.042 24 N -0.941 5.941 25 Si 1.075 2.925 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.295 1.295 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.408 0.592 37 H 0.145 0.855 38 H 0.419 0.581 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.368 0.632 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 9.857 -6.326 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.073 0.927 5 C -0.011 4.011 6 N -0.359 5.359 7 C 0.340 3.660 8 O -0.413 6.413 9 C -0.152 4.152 10 C -0.100 4.100 11 C 0.034 3.966 12 N -0.318 5.318 13 C 0.301 3.699 14 C -0.234 4.234 15 O -0.406 6.406 16 C -0.090 4.090 17 C -0.166 4.166 18 C 0.122 3.878 19 F -0.094 7.094 20 N -0.377 5.377 21 C -0.459 4.459 22 H 0.085 0.915 23 C -0.241 4.241 24 N -0.586 5.586 25 Si 0.906 3.094 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.223 1.223 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.245 0.755 37 H 0.162 0.838 38 H 0.256 0.744 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.201 0.799 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.752 10.177 -6.103 13.653 hybrid contribution 0.445 -0.883 -0.499 1.108 sum 7.197 9.294 -6.602 13.482 Atomic orbital electron populations 1.21763 0.95539 0.99663 1.03317 1.22050 0.97130 0.98161 1.00068 1.20509 0.89697 0.92878 0.91075 0.92671 1.21740 0.95646 0.82225 1.01477 1.45865 1.06617 1.10983 1.72388 1.17928 0.82882 0.87561 0.77640 1.90812 1.55899 1.45275 1.49278 1.19872 0.92487 0.94536 1.08354 1.21058 1.00168 0.90381 0.98428 1.17548 0.89686 0.87230 1.02102 1.43664 1.25063 1.09096 1.54010 1.21068 0.86158 0.83938 0.78695 1.21941 1.00459 0.96237 1.04721 1.90740 1.30043 1.84204 1.35619 1.21123 0.90802 1.00118 0.96934 1.20998 1.01398 0.90161 1.04051 1.17656 0.86043 0.84885 0.99205 1.91584 1.67912 1.58288 1.91613 1.42484 1.16828 1.67066 1.11305 1.20005 0.92653 1.32243 1.00976 0.91458 1.25681 1.05603 1.00537 0.92231 1.70886 1.08469 1.47388 1.31878 0.83305 0.74465 0.75917 0.75726 1.21145 1.22365 1.22267 0.89628 0.94099 0.94830 0.93696 0.92641 0.91664 0.91476 0.75489 0.83773 0.74404 0.88733 0.88536 0.88735 0.83544 0.83690 0.79856 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 3 C 0.17 3.02 2.59 -67.93 -0.18 2.84 16 4 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 5 C 0.11 1.89 5.23 -4.04 -0.02 1.87 16 6 N -0.71 -11.61 5.34 -61.30 -0.33 -11.93 16 7 C 0.55 9.68 7.77 -12.39 -0.10 9.58 16 8 O -0.53 -10.96 15.33 5.30 0.08 -10.88 16 9 C -0.15 -2.24 5.88 -104.93 -0.62 -2.85 16 10 C -0.08 -1.02 9.45 -38.98 -0.37 -1.39 16 11 C 0.13 1.53 6.27 -83.71 -0.53 1.01 16 12 N -0.67 -6.37 5.34 -9.88 -0.05 -6.42 16 13 C 0.51 4.99 7.67 -10.99 -0.08 4.91 16 14 C -0.17 -0.97 10.32 36.01 0.37 -0.60 16 15 O -0.53 -7.14 14.77 5.55 0.08 -7.06 16 16 C -0.07 -0.82 8.65 -39.33 -0.34 -1.16 16 17 C -0.15 -1.75 10.01 -39.59 -0.40 -2.15 16 18 C 0.14 2.11 7.28 -38.96 -0.28 1.82 16 19 F -0.12 -1.92 15.54 2.25 0.03 -1.89 16 20 N -0.73 -15.82 4.50 -53.43 -0.24 -16.06 16 21 C -0.33 -7.95 7.75 -15.06 -0.12 -8.07 16 22 H 0.07 1.63 7.33 -52.49 -0.38 1.24 16 23 C -0.04 -1.10 5.50 -17.43 -0.10 -1.19 16 24 N -0.94 -26.41 13.70 55.49 0.76 -25.65 16 25 Si 1.07 23.52 29.92 -169.99 -5.09 18.44 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.30 -6.12 7.11 56.52 0.40 -5.71 16 28 H -0.30 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.08 1.78 5.99 -51.93 -0.31 1.47 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.41 6.51 6.17 -40.82 -0.25 6.26 16 37 H 0.14 1.74 6.40 -52.49 -0.34 1.40 16 38 H 0.42 3.05 8.82 -40.82 -0.36 2.69 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.15 1.67 6.40 -52.49 -0.34 1.33 16 43 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.37 8.52 6.63 -40.82 -0.27 8.24 16 45 H 0.26 7.14 6.77 -40.82 -0.28 6.86 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -32.31 378.83 -7.57 -39.87 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -5.97 Total: 15.87 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.56 Total: 0.00 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.14 Total: -60.06 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.16 Total: -17.94 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.03 Total: -1.89 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.09 Total: 18.44 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.31 -7.57 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714124766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.266 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds